transcript:BL95600_evm0 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL95600_evm0
Unique Nametranscript:BL95600_evm0
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL95600_evm0

>transcript:BL95600_evm0-protein ID=transcript:BL95600_evm0-protein|Name=transcript:BL95600_evm0|organism=Branchiostoma lanceolatum|type=polypeptide|length=102bp
MYLSFCVVIEDRGSEESIKLLLEARKSKLLRCCNPKCGKAGYRSTLKLCG
GCKLTRYCSRDCQKQHWSAGHKKCCGHDADTGEPDLGLFLEKLVFMMANH
AH
Run BLAST on NCBI

mRNA from alignment at Sc0000068:148946..149765-

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL95600_evm0 ID=transcript:BL95600_evm0|Name=transcript:BL95600_evm0|organism=Branchiostoma lanceolatum|type=mRNA|length=820bp|location=Sequence derived from alignment at Sc0000068:148946..149765- (Branchiostoma lanceolatum)
ATGTATCTGAGTTTCTGTGTGTAAGTGTATGTGTGTGCATGTGTGTGTGT GTTTGTGTTAGTGTGTGAGTGTGTTTATATATGTGCCTAATGTCACATAA CCATGTAAAGGGTGAAACTTTCTATACCGTACATCTTATAGAAAACGCAT ACGATGACAACGACCTTTACTTCTTACTCGTACAGTATCTAACTATCCAT GCCCAACGTCGGACAAATCTTAAATACATTAAGTAACTAAAGTAAAACTG TTGAGAGGTCATGCTATATTTCATCTATATCTGCACACATTTCGAGGCCT CTTTCTCTAAATGAGTCTAATCTTCCACTAGAGTGATCGAAGACCGTGGC AGTGAAGAGAGTATAAAGCTGCTACTTGAGGCGAGGAAGTCCAAGCTGTT GAGATGCTGTAACCCGAAGTGTGGCAAAGCAGGCTATCGGTAGGTTTTGC TGATATTTCTTCTGCGTTCTGTTGTCACTTTGTCTACCGAGACTACCACA CACCGTCATCCGTGCGATGTGCAAGTGTTGTCATTGACCCAAAGAGATTA TGTTGCCATCTAAAATTCCAGTGAAGTCTTCGTATCTTACAATCTTCACA GTCCCATAATAGCTTCTGTATCTATTTCATCTTCTACAGGTCAACCCTGA AGCTGTGTGGTGGATGCAAGTTGACCCGCTACTGCAGTCGTGACTGTCAG AAACAGCACTGGTCTGCCGGACACAAGAAGTGCTGTGGGCATGACGCGGA CACTGGCGAGCCGGATCTAGGTCTCTTCCTTGAAAAGTTGGTCTTCATGA TGGCAAACCACGCCCATTGA

Coding sequence (CDS) from alignment at Sc0000068:148946..149765-

>transcript:BL95600_evm0 ID=transcript:BL95600_evm0|Name=transcript:BL95600_evm0|organism=Branchiostoma lanceolatum|type=CDS|length=927bp|location=Sequence derived from alignment at Sc0000068:148946..149765- (Branchiostoma lanceolatum)
ATGTATCTGAGTTTCTGTGTAGTGATCGAAGACCGTGGCAGTGAAGAGAG
TATAAAGCTGCTACTTGAGGCGAGGAAGTCCAAGCTGTTGAGATGCTGTA
ACCCGAAGTGTGGCAAAGCAGGCTATCGGTCAACCCTGAAGCTGTGTGGT
GGATGCAAGTTGACCCGCTACTGCAGTCGTGACTGTCAGAAACAGCACTG
GTCTGCCGGACACAAGAAGTGCTGTGGGCATGACGCGGACACTGGCGAGC
CGGATCTAGGTCTCTTCCTTGAAAAGTTGGTCTTCATGATGGCAAACCAC
GCCCATTGAATGTATCTGAGTTTCTGTGTAGTGATCGAAGACCGTGGCAG
TGAAGAGAGTATAAAGCTGCTACTTGAGGCGAGGAAGTCCAAGCTGTTGA
GATGCTGTAACCCGAAGTGTGGCAAAGCAGGCTATCGGTCAACCCTGAAG
CTGTGTGGTGGATGCAAGTTGACCCGCTACTGCAGTCGTGACTGTCAGAA
ACAGCACTGGTCTGCCGGACACAAGAAGTGCTGTGGGCATGACGCGGACA
CTGGCGAGCCGGATCTAGGTCTCTTCCTTGAAAAGTTGGTCTTCATGATG
GCAAACCACGCCCATTGAATGTATCTGAGTTTCTGTGTAGTGATCGAAGA
CCGTGGCAGTGAAGAGAGTATAAAGCTGCTACTTGAGGCGAGGAAGTCCA
AGCTGTTGAGATGCTGTAACCCGAAGTGTGGCAAAGCAGGCTATCGGTCA
ACCCTGAAGCTGTGTGGTGGATGCAAGTTGACCCGCTACTGCAGTCGTGA
CTGTCAGAAACAGCACTGGTCTGCCGGACACAAGAAGTGCTGTGGGCATG
ACGCGGACACTGGCGAGCCGGATCTAGGTCTCTTCCTTGAAAAGTTGGTC
TTCATGATGGCAAACCACGCCCATTGA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL95600gene:BL95600Branchiostoma lanceolatumgene
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL95600_evm0-E1BL95600_evm0-E1-1564476830-259524Branchiostoma lanceolatumexon
BL95600_evm0-E2BL95600_evm0-E2-1564476830-259522Branchiostoma lanceolatumexon
BL95600_evm0-E3BL95600_evm0-E3-1564476830-259520Branchiostoma lanceolatumexon
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL95600_evm0transcript:BL95600_evm0-proteinBranchiostoma lanceolatumpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000068genomeSc0000068:148946..149765 -
Properties
Property NameValue
Transcript idBL95600_evm0
Biotypeprotein_coding