transcript:BL95579_evm0 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL95579_evm0
Unique Nametranscript:BL95579_evm0
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



Full-screen view
Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL95579_evm0

>transcript:BL95579_evm0-protein ID=transcript:BL95579_evm0-protein|Name=transcript:BL95579_evm0|organism=Branchiostoma lanceolatum|type=polypeptide|length=185bp
MGRIAVLVLLVTIWTTVAAERCGYFNCPRTGIPYLDDADEKYCCEGNKCC
NNCWESTVDTSSCTGTNNWGVDFSVFDKASKAHNAYKAYKAFRLGIGAII
GIAVGCIVLITIVIVACICCCCVYAKRSNQRNQPQAVQMAPVAQPAQYPP
GQYPQYPPAQPPTYPQYPGGQPPAYPHQAYPPNKA
Run BLAST on NCBI

mRNA from alignment at Sc0000063:1419049..1421784+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL95579_evm0 ID=transcript:BL95579_evm0|Name=transcript:BL95579_evm0|organism=Branchiostoma lanceolatum|type=mRNA|length=2736bp|location=Sequence derived from alignment at Sc0000063:1419049..1421784+ (Branchiostoma lanceolatum)
ATGGGCCGGATTGCCGTATTGGTTTTGTTGGTCACTATCTGGACAACAGG
TAAGTACATGTACATACGTGATACTCATGTTAACCAAGTACTAGTAGTGA
TTAATCAACTGGGTAAACAACGAGGGGTGATCAATGAGTCCTCGGCCTTA
CCCAGAAATAAGGTGCACAGCTCAAATTTCGGGGAATAATTATGTAGTAA
TTTTAGCAATGTCCACCAAATTTCAAATCAGCCCGTTGCAGTACTGTAGA
AATACGCCAGGAAAACCATTTTCGAACTTGACCTTTGTTGCCACAACCAC
AACTCACCTACCAAAAATCATGAAGATCAATCAAAAGTTTCTCTAGTCAT
GCTCTTGACATACATATACAGACCCAACCCACAGCTGGCGTAACTGAAAA
CATAACCTTGTCGGCGACGGTAATGATAATAGACAAGATTCGCTTTGGCC
TCAAAACAATTTTCAATTTTTTTTGTATCCAGACTTTGGCTGTTTATGTG
AATGTGTGAACAGTTGAATGAGCATTTATCATAATGAACCTACTGAATGA
AATAAAATTACGTGTTAACTATATGCCACATATGCAACACATAAAGTCGT
ACCGTCTCGATCTGGTACAGCTAATTCCTACAAAGGTCACAACACAATGT
AGAGTCACCGCGTCCTTTGCTGGGTGGGGGCGTCAGACGAAAGTTGCAGA
ACGAGTTTCTCTATTAAACACTTGATCATCCATGCGTTCATCATCTTTGA
ATGTTGTTTACCCTGTGTACAGACATACTATCTCCACAGCTACTAGCTAT
GTGAGTGAGTGAGTGAGTGAGTGAGTGTGTGAGTGAGTGAGTGAGTGAGT
GAGTGAGTGAGTGAGTGAGTGAGTGAGTGAGTGAAGTAAACAGTGTAAGG
TGTTTGGAAATTTGTCAAAATAAGGCGTTTAAGAGAAGAGTAGATTTGAA
AGTTAAGCTTCAAATCTAGTGGTTGAATGCACCGTTTTTAGCAATATCAT
TTTATAGTAAATCACAACTGGTCTATCACTGCCCAGATATTTGTTAACTC
TGGTGAGCGTCTTTACCTTTACAACATACTACAAGACATTCTACAAGTGT
ATAGCTGTTTCATGGACTATCTTGGTTCGTTTGGTGCTTTGAGCGTGCTG
TTTCAGAAAACGTCGATAGGTGGCATGAATGAGAAGTTTCTTTGAATAGG
TTAATTTCATTTTGAAATGTCAATAAAGGGAGTTTAACAAGAACACGTTC
GAATAAATATAAAAGGGTGAAAAAGAACACTGCTGTTATGCTAGAATCCA
ACAAAAATTATGTATTTATATAAATACAATTGTGTAACGAGGAGGAAGAG
ACGAGGTAGTTCAGTTTATCTTGACCCTACTCATCTATCGACTCTGATAA
TACTTGTTCTTTACCTAAACATTAGTTGCTGCAGAGCGATGTGGCTATTT
CAACTGTCCACGGACGGGGATCCCGTACCTTGACGATGCCGATGAGAAAT
ACTGCTGCGAGGGAAACAAATGCTGTAACAACTGCTGGGAATCCACCGTG
GACACCTCCTCTTGTACTGGGACCAACAACTGGGGCGTCGATTTCAGCGT
TTTTGACAAAGCGTCCAAAGCGCACAACGCGTACAAAGCGTACAAAGCGT
TTCGACTAGGGTACAACTTCACACAGTTCAGATGCAGAACTTCTAGATTT
AAAAATACTACTTACCTTTTAGCGTGGACTTGAATGAATTGTAGTTTTTT
TATGAAGTGTAGTGTTATAATGTTATTGTAAGAAGTGTACAGTCATTGAA
TGAATTTTAATGAATTATGTCTAATACCACAATTCAGCCAGAAAAGGCTG
CGATGATATGTGTGTTGCAAATAAACCAGTTATTATTATCATTTACTTTG
CCAATATTACGTTAGCTATAGAAGATGAAAAATCTAGAATAACTAGCTCA
GAATTATGTCTCATACAGGATTATCTATACCGTTACCATCGTACGCAGAT
ACAACAGTTCAAGTAGTTTTGATATGACACGAAAAACTGTTGTTGATGTT
TTGAAGAAAGCATAACCTGACACATGTCCTGTGTTGTCCTAGTATCGGCG
CCATCATCGGCATAGCAGTGGGATGCATCGTCCTAATCACCATCGTCATT
GTGGCCTGTATCTGCTGCTGCTGCGTATACGCCAAGAGGTCCAACCAAAG
AAACCAACCACAGGGTAAGATCCACACATTAAAGTTTACGTCAGAGGTTA
CGGGCTAGTCAACGTTGGTCTAGCAACTTGTCATCTCCGCGCAAGAAGTC
ATGAGAACTGCCTTCCAGTGGAAGTAGTTTGGTATAATGCATATTAGAAG
AGACAGAAAATGTTACTCACTTTCTCTGAAAGGTATTACCTGGCATACAT
GACATCTCCGTCTAAGTCTAGAACATTAAGTGCTTTCTACTTTCTTTGTA
ATTGTGATGCTTAAAACACTGTGTTCGTTCATCCTTTCTTCTACTATAGT
TCCCGCCATGTCAGATGTATTGCTATCCGTGTTGCGTCTTTGTTGATGTT
GTATATCATTGAGACATAACTTTTTCCCCCACAGCTGTCCAAATGGCTCC
TGTTGCCCAGCCCGCACAGTATCCACCTGGCCAGTATCCCCAGTACCCCC
CTGCACAGCCTCCTACCTACCCGCAGTACCCGGGTGGACAACCCCCAGCC
TACCCTCACCAAGCTTACCCACCAAACAAGGCTTAA

Coding sequence (CDS) from alignment at Sc0000063:1419049..1421784+

>transcript:BL95579_evm0 ID=transcript:BL95579_evm0|Name=transcript:BL95579_evm0|organism=Branchiostoma lanceolatum|type=CDS|length=2232bp|location=Sequence derived from alignment at Sc0000063:1419049..1421784+ (Branchiostoma lanceolatum)
ATGGGCCGGATTGCCGTATTGGTTTTGTTGGTCACTATCTGGACAACAGT
TGCTGCAGAGCGATGTGGCTATTTCAACTGTCCACGGACGGGGATCCCGT
ACCTTGACGATGCCGATGAGAAATACTGCTGCGAGGGAAACAAATGCTGT
AACAACTGCTGGGAATCCACCGTGGACACCTCCTCTTGTACTGGGACCAA
CAACTGGGGCGTCGATTTCAGCGTTTTTGACAAAGCGTCCAAAGCGCACA
ACGCGTACAAAGCGTACAAAGCGTTTCGACTAGGTATCGGCGCCATCATC
GGCATAGCAGTGGGATGCATCGTCCTAATCACCATCGTCATTGTGGCCTG
TATCTGCTGCTGCTGCGTATACGCCAAGAGGTCCAACCAAAGAAACCAAC
CACAGGCTGTCCAAATGGCTCCTGTTGCCCAGCCCGCACAGTATCCACCT
GGCCAGTATCCCCAGTACCCCCCTGCACAGCCTCCTACCTACCCGCAGTA
CCCGGGTGGACAACCCCCAGCCTACCCTCACCAAGCTTACCCACCAAACA
AGGCTTAAATGGGCCGGATTGCCGTATTGGTTTTGTTGGTCACTATCTGG
ACAACAGTTGCTGCAGAGCGATGTGGCTATTTCAACTGTCCACGGACGGG
GATCCCGTACCTTGACGATGCCGATGAGAAATACTGCTGCGAGGGAAACA
AATGCTGTAACAACTGCTGGGAATCCACCGTGGACACCTCCTCTTGTACT
GGGACCAACAACTGGGGCGTCGATTTCAGCGTTTTTGACAAAGCGTCCAA
AGCGCACAACGCGTACAAAGCGTACAAAGCGTTTCGACTAGGTATCGGCG
CCATCATCGGCATAGCAGTGGGATGCATCGTCCTAATCACCATCGTCATT
GTGGCCTGTATCTGCTGCTGCTGCGTATACGCCAAGAGGTCCAACCAAAG
AAACCAACCACAGGCTGTCCAAATGGCTCCTGTTGCCCAGCCCGCACAGT
ATCCACCTGGCCAGTATCCCCAGTACCCCCCTGCACAGCCTCCTACCTAC
CCGCAGTACCCGGGTGGACAACCCCCAGCCTACCCTCACCAAGCTTACCC
ACCAAACAAGGCTTAAATGGGCCGGATTGCCGTATTGGTTTTGTTGGTCA
CTATCTGGACAACAGTTGCTGCAGAGCGATGTGGCTATTTCAACTGTCCA
CGGACGGGGATCCCGTACCTTGACGATGCCGATGAGAAATACTGCTGCGA
GGGAAACAAATGCTGTAACAACTGCTGGGAATCCACCGTGGACACCTCCT
CTTGTACTGGGACCAACAACTGGGGCGTCGATTTCAGCGTTTTTGACAAA
GCGTCCAAAGCGCACAACGCGTACAAAGCGTACAAAGCGTTTCGACTAGG
TATCGGCGCCATCATCGGCATAGCAGTGGGATGCATCGTCCTAATCACCA
TCGTCATTGTGGCCTGTATCTGCTGCTGCTGCGTATACGCCAAGAGGTCC
AACCAAAGAAACCAACCACAGGCTGTCCAAATGGCTCCTGTTGCCCAGCC
CGCACAGTATCCACCTGGCCAGTATCCCCAGTACCCCCCTGCACAGCCTC
CTACCTACCCGCAGTACCCGGGTGGACAACCCCCAGCCTACCCTCACCAA
GCTTACCCACCAAACAAGGCTTAAATGGGCCGGATTGCCGTATTGGTTTT
GTTGGTCACTATCTGGACAACAGTTGCTGCAGAGCGATGTGGCTATTTCA
ACTGTCCACGGACGGGGATCCCGTACCTTGACGATGCCGATGAGAAATAC
TGCTGCGAGGGAAACAAATGCTGTAACAACTGCTGGGAATCCACCGTGGA
CACCTCCTCTTGTACTGGGACCAACAACTGGGGCGTCGATTTCAGCGTTT
TTGACAAAGCGTCCAAAGCGCACAACGCGTACAAAGCGTACAAAGCGTTT
CGACTAGGTATCGGCGCCATCATCGGCATAGCAGTGGGATGCATCGTCCT
AATCACCATCGTCATTGTGGCCTGTATCTGCTGCTGCTGCGTATACGCCA
AGAGGTCCAACCAAAGAAACCAACCACAGGCTGTCCAAATGGCTCCTGTT
GCCCAGCCCGCACAGTATCCACCTGGCCAGTATCCCCAGTACCCCCCTGC
ACAGCCTCCTACCTACCCGCAGTACCCGGGTGGACAACCCCCAGCCTACC
CTCACCAAGCTTACCCACCAAACAAGGCTTAA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL95579gene:BL95579Branchiostoma lanceolatumgene
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL95579_evm0-E1BL95579_evm0-E1-1564476830-252395Branchiostoma lanceolatumexon
BL95579_evm0-E2BL95579_evm0-E2-1564476830-252397Branchiostoma lanceolatumexon
BL95579_evm0-E3BL95579_evm0-E3-1564476830-252399Branchiostoma lanceolatumexon
BL95579_evm0-E4BL95579_evm0-E4-1564476830-252401Branchiostoma lanceolatumexon
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL95579_evm0transcript:BL95579_evm0-proteinBranchiostoma lanceolatumpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000063genomeSc0000063:1419049..1421784 +
Properties
Property NameValue
Transcript idBL95579_evm0
Biotypeprotein_coding