transcript:BL95555_evm0 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL95555_evm0
Unique Nametranscript:BL95555_evm0
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



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Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL95555_evm0

>transcript:BL95555_evm0-protein ID=transcript:BL95555_evm0-protein|Name=transcript:BL95555_evm0|organism=Branchiostoma lanceolatum|type=polypeptide|length=180bp
MRSYYLYVNECDANDGQGPCDPHSGICLNSPGSYNCYCKTGYELKEGSYE
CKDVNECQDGKGPCDHICSDMLGSFRCHCRDGFELKADNVSCVANQYANQ
ERLCFALRRALGAGNVLADEMNGKEIHEDYDPPQHGSATCADVSTGGRFC
TVACNAQHDFACEPADGYTCDPEGQWHEVS
Run BLAST on NCBI

mRNA from alignment at Sc0000059:561735..563685+

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL95555_evm0 ID=transcript:BL95555_evm0|Name=transcript:BL95555_evm0|organism=Branchiostoma lanceolatum|type=mRNA|length=1951bp|location=Sequence derived from alignment at Sc0000059:561735..563685+ (Branchiostoma lanceolatum)
ATGAGGTCATACTACTTATGTGAGTATAACAGACAAAATAATCAGAGATC
TAGAAGAAGCTTCGATTCTTTCTACGAAATAGTGAATACAAGATGACGGA
TACAGGAGAATTTATCAAGCGTGCTATTGGTGATAAGATATCAGTTGGTA
CGACTAAGAAAGACCGGTTCGATTTGGAGAATGTTTGTTGATAGATAAGT
AAAGGTGGGGAAAGGCCATTGGGGTTTTAAATGTTGACAAGATTTTCATT
GTTGGTTTAATACCAGATGTGAATGAGTGCGATGCCAATGATGGACAGGG
TCCCTGCGACCCTCACAGCGGCATCTGCCTGAACTCCCCGGGAAGCTACA
ATTGCTATTGTAAGACCGGGTATGAACTAAAGGAAGGCAGTTACGAGTGC
AAGGGTATGTAACAACTTTTGCACCCGGGGTATGGTCATTAATTCCTTTG
AACATTGCTAATATTTGTTTTTCGATGAACACGATTTTAAGTCAAGTGTG
ATTTTTGCCTGTGAATCGTTTATGTACTAAACTTTTATATCAAAGACAGA
CTTAAAACTCTCTACAAAGCATGGCATCCTTTAAGGTTCTAACCGACTCG
AAATGGCTGTCTGAAACTTAACATATTATTCCAGATGATCTTGGACAAGA
AACAGCATAGTAGCACCTTTTCTGTTTCTTGGTGTGTTATTTGGCCGGCC
TCATTACGTTCAATACATAGTGCAATCATCATTAGCGGGCTTTTAATGCT
GACACTCTGCTTCTCTTGGCTCATTATGCAAAGATCACATTTCATCTAGT
TTAACTGTATTACCAACTGTCTTGTCAGATGTTAATGAGTGCCAGGACGG
AAAAGGCCCGTGTGATCACATCTGTTCAGACATGTTGGGGAGCTTCCGCT
GCCATTGTAGGGACGGATTTGAACTGAAAGCTGATAACGTCTCGTGTGTT
GGTACGTACTTTTGCGGAATTGATTTGTTACTTCAAGGAAAAATGTTCAT
CAGTATATTGTTAGTTCAATCTAATAACAATTCTATCCAATTTTAAAATA
CGGCGCACGATTCACTCGGCAGGGCTAACCATTGCAACTCTTCTCCTCTA
GAGGCTGATGACTGCCGATCCAACCCTTGTGAGAATGGAGCGACCTGTCA
CGATGGAAACCAAACCTACACCTGTCAATGCCCAAGCGGATTCAAGGGAC
ACAACTGTGAATTTGGTAAGACGTGGCACATGTTTCTTCTTTTTAGCCCC
ACAGCCAATCAGTACGCAAACCAAGAGCGTCTGTGTTTTGCATTGCGACG
TGCTCTTGGAGCAGGTAATGTTCTTGCTGACGAAATGAATGGCAAGGAAA
TACAGTAAGTAAAATACATATTTCTTATGAACGATGCTGAAGTTATCATA
AATAACCAATCTATCGAATGTTCTAAATGTTCTAAATGCCAATTCCCATA
GTTCCCTGCAGTGAGGACTACGATCCACCTCAGCACGGGTCTGCTACGTG
CGCCGATGTTTCCACCGGTGGGAGATTCTGCACTGTCGCCTGTAACGCCC
AGCACGACTTCGCCTGTGAACCTGCGGACGGTTACACCTGTGACCCGGAG
GGCCAGTGGCACGAAGTCGGACGATCAAGCTGCCCAGCTGGACCAAGTGA
AGATGCTCCATGGCCGGATTGTTCTAGTAAATGAGTTTTTATGTCGCCAC
CATTGGCACTGAAATGGCCATGCGTATGCGCATGGGATCCGGAACCTAAG
ATCCGAAAGAATCTAAACGGATCCGGGCCGTATAGTACTAACGCAACTCA
AATTTACCTGCATTAACCTGCACACCTTGAAGCGGAGGTCCCCCAACCTG
CCCCATAGAAACCGGATTACTTAACAAATCATTCAGTATTGTTTAGCATT
AGTATTAGTTGTGAATGTTTAAAAGTATGCATCCATTCACAGGTGAGTTA
A

Coding sequence (CDS) from alignment at Sc0000059:561735..563685+

>transcript:BL95555_evm0 ID=transcript:BL95555_evm0|Name=transcript:BL95555_evm0|organism=Branchiostoma lanceolatum|type=CDS|length=3258bp|location=Sequence derived from alignment at Sc0000059:561735..563685+ (Branchiostoma lanceolatum)
ATGAGGTCATACTACTTATATGTGAATGAGTGCGATGCCAATGATGGACA
GGGTCCCTGCGACCCTCACAGCGGCATCTGCCTGAACTCCCCGGGAAGCT
ACAATTGCTATTGTAAGACCGGGTATGAACTAAAGGAAGGCAGTTACGAG
TGCAAGGATGTTAATGAGTGCCAGGACGGAAAAGGCCCGTGTGATCACAT
CTGTTCAGACATGTTGGGGAGCTTCCGCTGCCATTGTAGGGACGGATTTG
AACTGAAAGCTGATAACGTCTCGTGTGTTGCCAATCAGTACGCAAACCAA
GAGCGTCTGTGTTTTGCATTGCGACGTGCTCTTGGAGCAGGTAATGTTCT
TGCTGACGAAATGAATGGCAAGGAAATACATGAGGACTACGATCCACCTC
AGCACGGGTCTGCTACGTGCGCCGATGTTTCCACCGGTGGGAGATTCTGC
ACTGTCGCCTGTAACGCCCAGCACGACTTCGCCTGTGAACCTGCGGACGG
TTACACCTGTGACCCGGAGGGCCAGTGGCACGAAGTGAGTTAAATGAGGT
CATACTACTTATATGTGAATGAGTGCGATGCCAATGATGGACAGGGTCCC
TGCGACCCTCACAGCGGCATCTGCCTGAACTCCCCGGGAAGCTACAATTG
CTATTGTAAGACCGGGTATGAACTAAAGGAAGGCAGTTACGAGTGCAAGG
ATGTTAATGAGTGCCAGGACGGAAAAGGCCCGTGTGATCACATCTGTTCA
GACATGTTGGGGAGCTTCCGCTGCCATTGTAGGGACGGATTTGAACTGAA
AGCTGATAACGTCTCGTGTGTTGCCAATCAGTACGCAAACCAAGAGCGTC
TGTGTTTTGCATTGCGACGTGCTCTTGGAGCAGGTAATGTTCTTGCTGAC
GAAATGAATGGCAAGGAAATACATGAGGACTACGATCCACCTCAGCACGG
GTCTGCTACGTGCGCCGATGTTTCCACCGGTGGGAGATTCTGCACTGTCG
CCTGTAACGCCCAGCACGACTTCGCCTGTGAACCTGCGGACGGTTACACC
TGTGACCCGGAGGGCCAGTGGCACGAAGTGAGTTAAATGAGGTCATACTA
CTTATATGTGAATGAGTGCGATGCCAATGATGGACAGGGTCCCTGCGACC
CTCACAGCGGCATCTGCCTGAACTCCCCGGGAAGCTACAATTGCTATTGT
AAGACCGGGTATGAACTAAAGGAAGGCAGTTACGAGTGCAAGGATGTTAA
TGAGTGCCAGGACGGAAAAGGCCCGTGTGATCACATCTGTTCAGACATGT
TGGGGAGCTTCCGCTGCCATTGTAGGGACGGATTTGAACTGAAAGCTGAT
AACGTCTCGTGTGTTGCCAATCAGTACGCAAACCAAGAGCGTCTGTGTTT
TGCATTGCGACGTGCTCTTGGAGCAGGTAATGTTCTTGCTGACGAAATGA
ATGGCAAGGAAATACATGAGGACTACGATCCACCTCAGCACGGGTCTGCT
ACGTGCGCCGATGTTTCCACCGGTGGGAGATTCTGCACTGTCGCCTGTAA
CGCCCAGCACGACTTCGCCTGTGAACCTGCGGACGGTTACACCTGTGACC
CGGAGGGCCAGTGGCACGAAGTGAGTTAAATGAGGTCATACTACTTATAT
GTGAATGAGTGCGATGCCAATGATGGACAGGGTCCCTGCGACCCTCACAG
CGGCATCTGCCTGAACTCCCCGGGAAGCTACAATTGCTATTGTAAGACCG
GGTATGAACTAAAGGAAGGCAGTTACGAGTGCAAGGATGTTAATGAGTGC
CAGGACGGAAAAGGCCCGTGTGATCACATCTGTTCAGACATGTTGGGGAG
CTTCCGCTGCCATTGTAGGGACGGATTTGAACTGAAAGCTGATAACGTCT
CGTGTGTTGCCAATCAGTACGCAAACCAAGAGCGTCTGTGTTTTGCATTG
CGACGTGCTCTTGGAGCAGGTAATGTTCTTGCTGACGAAATGAATGGCAA
GGAAATACATGAGGACTACGATCCACCTCAGCACGGGTCTGCTACGTGCG
CCGATGTTTCCACCGGTGGGAGATTCTGCACTGTCGCCTGTAACGCCCAG
CACGACTTCGCCTGTGAACCTGCGGACGGTTACACCTGTGACCCGGAGGG
CCAGTGGCACGAAGTGAGTTAAATGAGGTCATACTACTTATATGTGAATG
AGTGCGATGCCAATGATGGACAGGGTCCCTGCGACCCTCACAGCGGCATC
TGCCTGAACTCCCCGGGAAGCTACAATTGCTATTGTAAGACCGGGTATGA
ACTAAAGGAAGGCAGTTACGAGTGCAAGGATGTTAATGAGTGCCAGGACG
GAAAAGGCCCGTGTGATCACATCTGTTCAGACATGTTGGGGAGCTTCCGC
TGCCATTGTAGGGACGGATTTGAACTGAAAGCTGATAACGTCTCGTGTGT
TGCCAATCAGTACGCAAACCAAGAGCGTCTGTGTTTTGCATTGCGACGTG
CTCTTGGAGCAGGTAATGTTCTTGCTGACGAAATGAATGGCAAGGAAATA
CATGAGGACTACGATCCACCTCAGCACGGGTCTGCTACGTGCGCCGATGT
TTCCACCGGTGGGAGATTCTGCACTGTCGCCTGTAACGCCCAGCACGACT
TCGCCTGTGAACCTGCGGACGGTTACACCTGTGACCCGGAGGGCCAGTGG
CACGAAGTGAGTTAAATGAGGTCATACTACTTATATGTGAATGAGTGCGA
TGCCAATGATGGACAGGGTCCCTGCGACCCTCACAGCGGCATCTGCCTGA
ACTCCCCGGGAAGCTACAATTGCTATTGTAAGACCGGGTATGAACTAAAG
GAAGGCAGTTACGAGTGCAAGGATGTTAATGAGTGCCAGGACGGAAAAGG
CCCGTGTGATCACATCTGTTCAGACATGTTGGGGAGCTTCCGCTGCCATT
GTAGGGACGGATTTGAACTGAAAGCTGATAACGTCTCGTGTGTTGCCAAT
CAGTACGCAAACCAAGAGCGTCTGTGTTTTGCATTGCGACGTGCTCTTGG
AGCAGGTAATGTTCTTGCTGACGAAATGAATGGCAAGGAAATACATGAGG
ACTACGATCCACCTCAGCACGGGTCTGCTACGTGCGCCGATGTTTCCACC
GGTGGGAGATTCTGCACTGTCGCCTGTAACGCCCAGCACGACTTCGCCTG
TGAACCTGCGGACGGTTACACCTGTGACCCGGAGGGCCAGTGGCACGAAG
TGAGTTAA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL95555gene:BL95555Branchiostoma lanceolatumgene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL95555_evm0transcript:BL95555_evm0-proteinBranchiostoma lanceolatumpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL95555_evm0-E1BL95555_evm0-E1-1564476830-243121Branchiostoma lanceolatumexon
BL95555_evm0-E2BL95555_evm0-E2-1564476830-243123Branchiostoma lanceolatumexon
BL95555_evm0-E3BL95555_evm0-E3-1564476830-243125Branchiostoma lanceolatumexon
BL95555_evm0-E4BL95555_evm0-E4-1564476830-243127Branchiostoma lanceolatumexon
BL95555_evm0-E5BL95555_evm0-E5-1564476830-243129Branchiostoma lanceolatumexon
BL95555_evm0-E6BL95555_evm0-E6-1564476830-243131Branchiostoma lanceolatumexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000059genomeSc0000059:561735..563685 +
Properties
Property NameValue
Transcript idBL95555_evm0
Biotypeprotein_coding