|
|
Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL95522_evm0 >transcript:BL95522_evm0-protein ID=transcript:BL95522_evm0-protein|Name=transcript:BL95522_evm0|organism=Branchiostoma lanceolatum|type=polypeptide|length=469bp
MQSVDEPPDGGWGWMVVLSTFLVHVIAIGAYGSVGVFYAEFREVFRESAG
TTSFISSVFIATQLMCSPIASALSNLTSCRTVAMAGSVIAAVGLGVSFFA
QNIAHLIITIGLITGFGISLVYVPSLAMIGKYFHKRHATANGIAISGAGV
SMLVLSPLFQFLIDEFRWNGALLIFGGVMLNGCACGALLRPLHIRKAHKE
EEAENKDNEEATDSSKTCKVIPSCQNFLEIFDVTLLKNRPFLVYSLSLFT
LSLGNSIIYVHLVAHAQALGVGKTQAAFLPSIMGIVETVVRPINGWLSDR
VPVRKLYYYMAGSIGLGICNIAIPHSRTYAALVACMVFYGISMGTFYPLI
AVLVRKYSGVSRISGGLGWAFVFQGAAYLLGQPIAGWLYDATGNYDMSFY
AAATFIFVSVAILLLLVPRKGGKWTLESGEPAPDECDEVMGLNGLPARQL
LVDNGTTETLLTCELLTCV Run BLAST on NCBI mRNA from alignment at Sc0000054:1342360..1345608- Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL95522_evm0 ID=transcript:BL95522_evm0|Name=transcript:BL95522_evm0|organism=Branchiostoma lanceolatum|type=mRNA|length=3249bp|location=Sequence derived from alignment at Sc0000054:1342360..1345608- (Branchiostoma lanceolatum)
ATGCAGTCTGTGGATGAGCCGCCAGACGGCGGCTGGGGGTGGATGGTGGT
TCTGAGCACATTTCTAGTTCACGTCATCGCTATAGGAGCCTACGGGTCCG
TCGGAGTGTTCTACGCGGAGTTCCGAGAGGTTTTCCGAGAAAGCGCGGGA
ACTACGTCCTTTATCAGTTCTGTCTTCATAGCTACTCAACTAATGTGCTG
TGAGCATAACATATACAATGTACTTATAAATGTCTCATTATGAAAAAAGG
TGAACCTTTTGCACCACAAAAACTGGACTTAACCGAGTTTTTGAGCATGC
AGCCCATGGTCCTCTTCAGGATTCGAGGAAACCCGGAAATAAGATATACA
ACTCAAATTTCGGGGCAGAATTAGTTATATGATGAAGTATTCTATCAACA
TCCACCCAATAGACCCCTTTCCAAATACAGCGGCCATTTTGATTTATTCT
CGCGAGAGCACATTCCAGCGAGCGCGCGAGAGACTTCAATCAAAACACCC
GGTAAACTTATCTCGAGCCCACACGGTAACAATGGCGTCTCCAATGGGAA
GCACTGCCGAGCCATCTTCAAATAATTGTGGTTATTACTTTCCAGTCGAC
GTTTTTTTTTTAAAATCAGTAGGTAAGTAGCGAGAAAAACAAGGGTAAAC
TGTGATCAGAGCGGTTTGGGTCGAGTTCCTCGTGTCTTGAAATCTGCGAA
TACATTTTCAAATGTTTGATAAGGATTTCCTTCGTATTTTAACTAGAAAG
AAGTGGGTATCTGATTTCAGCAGAGCAAGTTGACCCGCCCACCTGAAATC
ACAGCTCAATTTTCCATGTTCTTTCCTTTAATCTCACCTGACGCTACTGG
ATGTCACCTGCAAAGTAATTATCGCAATGATTTGAATTTCAGTGGACATT
CATCAAAGGCTTTATACTTTATAAGTATGCCAAACAAAATGAATTGTGCA
CCTTATTTCTGCGTGAGGCCGAGAACTTATTGATCAGCCCTCATAGCTGA
GGACCCGATTCCATCATCAGCCATCAGGTTCTCAGTTCTAAAGCATTTTA
ATCCCAGTGATATATAACCAATCTACAAAACTGTGGATGCAAACGTTTGT
ACTTTTTATTCTTTTTAGCTCCCATCGCCAGTGCCCTGAGTAACCTGACC
AGCTGTCGTACCGTCGCCATGGCAGGAAGCGTCATTGCTGCCGTGGGACT
CGGGGTCAGCTTCTTCGCACAGAACATCGCGCACCTGATCATCACCATTG
GGCTGATAACAGGTCTGTATTTGAGTATTGTCTCAATACTTTGGCCTCAA
TGAAATCGATACATTGTGGAATGTACAACTATTGAGGGATAAACATTTGG
AAATGGTCAAACGAGGCTTTCTCCAATCAGGTGCCTGAAGACAATATAGT
AGCCAGGTGGCCATCCTCAGCTAAACGTTATTACCTTGCCTTCAAGCATC
TACTGGAAGATTATGACAGCTACTGATGATTATGCAAAAGATCTTGAAGC
AATTTGATAGATTTTGTTAACGCTCAGACGTTTCAGGTGGCNACTGGAAG
ATGATGATAGCTACTGATGACTATGCAAAAGATCTTGAAGCAATTTGATA
GATTTTGTTAACGCTCAGACGTTTCAGGTGGCATCACCTTTGGTCAGCGA
CCTGATTAGCATCTGAGTCATTCCAAAAAAAGGAAATTAAACAAACAGAA
AAAAATTGATCACAAAACGGAAACAACCAAAAACAAGGGATGAAAACAGC
TTTTAATCGGTCGCGTTTCTTGCAGGATTTGGGATTTCTCTGGTGTACGT
CCCAAGTCTGGCTATGATCGGGAAATACTTCCACAAGCGGCACGCCACAG
CAAATGGGATCGCGATCAGTGGGGCCGGGGTCAGCATGTTGGTCCTTTCG
CCGCTCTTCCAGTTCCTTATCGATGAGTTCAGGTGGAATGGAGCACTCCT
GATTTTCGGCGGCGTGATGCTAAATGGCTGCGCCTGTGGCGCCTTACTGA
GACCCTTACATATTAGAAAAGCCCACAAAGAGGAAGAAGCCGAAAATAAA
GACAATGAGGAGGCCACAGATTCTTCAAAGACTTGCAAAGTCATTCCATC
ATGTCAAAACTTTTTGGAAATATTTGACGTGACTTTATTAAAAAACCGAC
CTTTCCTTGTCTACAGCCTGTCCCTGTTTACATTATCGTTGGGCAATTCA
ATTATTTATGTGCACTTGGTAGCCCACGCCCAAGCTCTAGGGGTGGGGAA
AACGCAAGCCGCATTTCTTCCGTCCATTATGGGCATCGTCGAAACCGTCG
TAAGGCCGATAAACGGGTGGCTATCAGATAGAGTGCCAGTCAGAAAACTG
TACTATTACATGGCAGGTTCTATTGGTCTGGGAATATGCAATATCGCCAT
ACCACACTCGCGGACATACGCGGCCCTGGTGGCGTGCATGGTGTTCTATG
GGATTTCTATGGGTACCTTCTACCCACTGATTGCGGTCCTTGTACGGAAA
TACAGCGGCGTTTCCAGGATTTCCGGCGGGCTTGGGTGGGCGTTCGTCTT
CCAGGGTGCCGCCTATCTGCTGGGACAACCCATAGCAGGTATAAAGCATC
GGCCTGATCACGGATCCCATTGCATGCTGGGAGCACGCGGGGCACTGTGG
GGAGCGGAGGGGCAGATCTATCATTACCATGACAACGCTATATGCCTTGC
AAGCGTGCTACGTCCAGTCCATCTTGCCAGTGGTAATGGTTTGCTCCATG
AGCTACCCATAGTGCCCCGTGTCTCCCAGCATGCAGTAGGATCCGTGAAA
TGGTCTATGAAGAAAATGATAAGATAAAGGGATGAACTGAAAGACAAAAT
ACAGGAAATCTGAAATTGTAGCTAATGTTAGTGATTATATTACTGTTTCT
GGATTTCACTAAATACGCCGGATTCATGCATCAATTTATATTTCAAGTTG
ATGGCAAAATTGGACCTTAATGCCTTACAAAATCTTCCCCTTCAGGCTGG
CTGTATGACGCAACCGGAAACTACGACATGTCCTTCTATGCAGCTGCGAC
CTTCATCTTCGTCTCCGTGGCCATTCTTCTCCTCCTCGTACCGAGGAAAG
GGGGAAAATGGACGCTGGAGTCCGGCGAGCCTGCTCCTGACGAGTGTGAC
GAAGTGATGGGACTTAACGGACTTCCAGCTAGACAACTTCTTGTCGATAA
TGGTACTACTGAAACCCTATTGACCTGTGAACTATTGACCTGTGTGTAA Coding sequence (CDS) from alignment at Sc0000054:1342360..1345608- >transcript:BL95522_evm0 ID=transcript:BL95522_evm0|Name=transcript:BL95522_evm0|organism=Branchiostoma lanceolatum|type=CDS|length=5640bp|location=Sequence derived from alignment at Sc0000054:1342360..1345608- (Branchiostoma lanceolatum)
ATGCAGTCTGTGGATGAGCCGCCAGACGGCGGCTGGGGGTGGATGGTGGT
TCTGAGCACATTTCTAGTTCACGTCATCGCTATAGGAGCCTACGGGTCCG
TCGGAGTGTTCTACGCGGAGTTCCGAGAGGTTTTCCGAGAAAGCGCGGGA
ACTACGTCCTTTATCAGTTCTGTCTTCATAGCTACTCAACTAATGTGCTC
TCCCATCGCCAGTGCCCTGAGTAACCTGACCAGCTGTCGTACCGTCGCCA
TGGCAGGAAGCGTCATTGCTGCCGTGGGACTCGGGGTCAGCTTCTTCGCA
CAGAACATCGCGCACCTGATCATCACCATTGGGCTGATAACAGGATTTGG
GATTTCTCTGGTGTACGTCCCAAGTCTGGCTATGATCGGGAAATACTTCC
ACAAGCGGCACGCCACAGCAAATGGGATCGCGATCAGTGGGGCCGGGGTC
AGCATGTTGGTCCTTTCGCCGCTCTTCCAGTTCCTTATCGATGAGTTCAG
GTGGAATGGAGCACTCCTGATTTTCGGCGGCGTGATGCTAAATGGCTGCG
CCTGTGGCGCCTTACTGAGACCCTTACATATTAGAAAAGCCCACAAAGAG
GAAGAAGCCGAAAATAAAGACAATGAGGAGGCCACAGATTCTTCAAAGAC
TTGCAAAGTCATTCCATCATGTCAAAACTTTTTGGAAATATTTGACGTGA
CTTTATTAAAAAACCGACCTTTCCTTGTCTACAGCCTGTCCCTGTTTACA
TTATCGTTGGGCAATTCAATTATTTATGTGCACTTGGTAGCCCACGCCCA
AGCTCTAGGGGTGGGGAAAACGCAAGCCGCATTTCTTCCGTCCATTATGG
GCATCGTCGAAACCGTCGTAAGGCCGATAAACGGGTGGCTATCAGATAGA
GTGCCAGTCAGAAAACTGTACTATTACATGGCAGGTTCTATTGGTCTGGG
AATATGCAATATCGCCATACCACACTCGCGGACATACGCGGCCCTGGTGG
CGTGCATGGTGTTCTATGGGATTTCTATGGGTACCTTCTACCCACTGATT
GCGGTCCTTGTACGGAAATACAGCGGCGTTTCCAGGATTTCCGGCGGGCT
TGGGTGGGCGTTCGTCTTCCAGGGTGCCGCCTATCTGCTGGGACAACCCA
TAGCAGGCTGGCTGTATGACGCAACCGGAAACTACGACATGTCCTTCTAT
GCAGCTGCGACCTTCATCTTCGTCTCCGTGGCCATTCTTCTCCTCCTCGT
ACCGAGGAAAGGGGGAAAATGGACGCTGGAGTCCGGCGAGCCTGCTCCTG
ACGAGTGTGACGAAGTGATGGGACTTAACGGACTTCCAGCTAGACAACTT
CTTGTCGATAATGGTACTACTGAAACCCTATTGACCTGTGAACTATTGAC
CTGTGTGTAAATGCAGTCTGTGGATGAGCCGCCAGACGGCGGCTGGGGGT
GGATGGTGGTTCTGAGCACATTTCTAGTTCACGTCATCGCTATAGGAGCC
TACGGGTCCGTCGGAGTGTTCTACGCGGAGTTCCGAGAGGTTTTCCGAGA
AAGCGCGGGAACTACGTCCTTTATCAGTTCTGTCTTCATAGCTACTCAAC
TAATGTGCTCTCCCATCGCCAGTGCCCTGAGTAACCTGACCAGCTGTCGT
ACCGTCGCCATGGCAGGAAGCGTCATTGCTGCCGTGGGACTCGGGGTCAG
CTTCTTCGCACAGAACATCGCGCACCTGATCATCACCATTGGGCTGATAA
CAGGATTTGGGATTTCTCTGGTGTACGTCCCAAGTCTGGCTATGATCGGG
AAATACTTCCACAAGCGGCACGCCACAGCAAATGGGATCGCGATCAGTGG
GGCCGGGGTCAGCATGTTGGTCCTTTCGCCGCTCTTCCAGTTCCTTATCG
ATGAGTTCAGGTGGAATGGAGCACTCCTGATTTTCGGCGGCGTGATGCTA
AATGGCTGCGCCTGTGGCGCCTTACTGAGACCCTTACATATTAGAAAAGC
CCACAAAGAGGAAGAAGCCGAAAATAAAGACAATGAGGAGGCCACAGATT
CTTCAAAGACTTGCAAAGTCATTCCATCATGTCAAAACTTTTTGGAAATA
TTTGACGTGACTTTATTAAAAAACCGACCTTTCCTTGTCTACAGCCTGTC
CCTGTTTACATTATCGTTGGGCAATTCAATTATTTATGTGCACTTGGTAG
CCCACGCCCAAGCTCTAGGGGTGGGGAAAACGCAAGCCGCATTTCTTCCG
TCCATTATGGGCATCGTCGAAACCGTCGTAAGGCCGATAAACGGGTGGCT
ATCAGATAGAGTGCCAGTCAGAAAACTGTACTATTACATGGCAGGTTCTA
TTGGTCTGGGAATATGCAATATCGCCATACCACACTCGCGGACATACGCG
GCCCTGGTGGCGTGCATGGTGTTCTATGGGATTTCTATGGGTACCTTCTA
CCCACTGATTGCGGTCCTTGTACGGAAATACAGCGGCGTTTCCAGGATTT
CCGGCGGGCTTGGGTGGGCGTTCGTCTTCCAGGGTGCCGCCTATCTGCTG
GGACAACCCATAGCAGGCTGGCTGTATGACGCAACCGGAAACTACGACAT
GTCCTTCTATGCAGCTGCGACCTTCATCTTCGTCTCCGTGGCCATTCTTC
TCCTCCTCGTACCGAGGAAAGGGGGAAAATGGACGCTGGAGTCCGGCGAG
CCTGCTCCTGACGAGTGTGACGAAGTGATGGGACTTAACGGACTTCCAGC
TAGACAACTTCTTGTCGATAATGGTACTACTGAAACCCTATTGACCTGTG
AACTATTGACCTGTGTGTAAATGCAGTCTGTGGATGAGCCGCCAGACGGC
GGCTGGGGGTGGATGGTGGTTCTGAGCACATTTCTAGTTCACGTCATCGC
TATAGGAGCCTACGGGTCCGTCGGAGTGTTCTACGCGGAGTTCCGAGAGG
TTTTCCGAGAAAGCGCGGGAACTACGTCCTTTATCAGTTCTGTCTTCATA
GCTACTCAACTAATGTGCTCTCCCATCGCCAGTGCCCTGAGTAACCTGAC
CAGCTGTCGTACCGTCGCCATGGCAGGAAGCGTCATTGCTGCCGTGGGAC
TCGGGGTCAGCTTCTTCGCACAGAACATCGCGCACCTGATCATCACCATT
GGGCTGATAACAGGATTTGGGATTTCTCTGGTGTACGTCCCAAGTCTGGC
TATGATCGGGAAATACTTCCACAAGCGGCACGCCACAGCAAATGGGATCG
CGATCAGTGGGGCCGGGGTCAGCATGTTGGTCCTTTCGCCGCTCTTCCAG
TTCCTTATCGATGAGTTCAGGTGGAATGGAGCACTCCTGATTTTCGGCGG
CGTGATGCTAAATGGCTGCGCCTGTGGCGCCTTACTGAGACCCTTACATA
TTAGAAAAGCCCACAAAGAGGAAGAAGCCGAAAATAAAGACAATGAGGAG
GCCACAGATTCTTCAAAGACTTGCAAAGTCATTCCATCATGTCAAAACTT
TTTGGAAATATTTGACGTGACTTTATTAAAAAACCGACCTTTCCTTGTCT
ACAGCCTGTCCCTGTTTACATTATCGTTGGGCAATTCAATTATTTATGTG
CACTTGGTAGCCCACGCCCAAGCTCTAGGGGTGGGGAAAACGCAAGCCGC
ATTTCTTCCGTCCATTATGGGCATCGTCGAAACCGTCGTAAGGCCGATAA
ACGGGTGGCTATCAGATAGAGTGCCAGTCAGAAAACTGTACTATTACATG
GCAGGTTCTATTGGTCTGGGAATATGCAATATCGCCATACCACACTCGCG
GACATACGCGGCCCTGGTGGCGTGCATGGTGTTCTATGGGATTTCTATGG
GTACCTTCTACCCACTGATTGCGGTCCTTGTACGGAAATACAGCGGCGTT
TCCAGGATTTCCGGCGGGCTTGGGTGGGCGTTCGTCTTCCAGGGTGCCGC
CTATCTGCTGGGACAACCCATAGCAGGCTGGCTGTATGACGCAACCGGAA
ACTACGACATGTCCTTCTATGCAGCTGCGACCTTCATCTTCGTCTCCGTG
GCCATTCTTCTCCTCCTCGTACCGAGGAAAGGGGGAAAATGGACGCTGGA
GTCCGGCGAGCCTGCTCCTGACGAGTGTGACGAAGTGATGGGACTTAACG
GACTTCCAGCTAGACAACTTCTTGTCGATAATGGTACTACTGAAACCCTA
TTGACCTGTGAACTATTGACCTGTGTGTAAATGCAGTCTGTGGATGAGCC
GCCAGACGGCGGCTGGGGGTGGATGGTGGTTCTGAGCACATTTCTAGTTC
ACGTCATCGCTATAGGAGCCTACGGGTCCGTCGGAGTGTTCTACGCGGAG
TTCCGAGAGGTTTTCCGAGAAAGCGCGGGAACTACGTCCTTTATCAGTTC
TGTCTTCATAGCTACTCAACTAATGTGCTCTCCCATCGCCAGTGCCCTGA
GTAACCTGACCAGCTGTCGTACCGTCGCCATGGCAGGAAGCGTCATTGCT
GCCGTGGGACTCGGGGTCAGCTTCTTCGCACAGAACATCGCGCACCTGAT
CATCACCATTGGGCTGATAACAGGATTTGGGATTTCTCTGGTGTACGTCC
CAAGTCTGGCTATGATCGGGAAATACTTCCACAAGCGGCACGCCACAGCA
AATGGGATCGCGATCAGTGGGGCCGGGGTCAGCATGTTGGTCCTTTCGCC
GCTCTTCCAGTTCCTTATCGATGAGTTCAGGTGGAATGGAGCACTCCTGA
TTTTCGGCGGCGTGATGCTAAATGGCTGCGCCTGTGGCGCCTTACTGAGA
CCCTTACATATTAGAAAAGCCCACAAAGAGGAAGAAGCCGAAAATAAAGA
CAATGAGGAGGCCACAGATTCTTCAAAGACTTGCAAAGTCATTCCATCAT
GTCAAAACTTTTTGGAAATATTTGACGTGACTTTATTAAAAAACCGACCT
TTCCTTGTCTACAGCCTGTCCCTGTTTACATTATCGTTGGGCAATTCAAT
TATTTATGTGCACTTGGTAGCCCACGCCCAAGCTCTAGGGGTGGGGAAAA
CGCAAGCCGCATTTCTTCCGTCCATTATGGGCATCGTCGAAACCGTCGTA
AGGCCGATAAACGGGTGGCTATCAGATAGAGTGCCAGTCAGAAAACTGTA
CTATTACATGGCAGGTTCTATTGGTCTGGGAATATGCAATATCGCCATAC
CACACTCGCGGACATACGCGGCCCTGGTGGCGTGCATGGTGTTCTATGGG
ATTTCTATGGGTACCTTCTACCCACTGATTGCGGTCCTTGTACGGAAATA
CAGCGGCGTTTCCAGGATTTCCGGCGGGCTTGGGTGGGCGTTCGTCTTCC
AGGGTGCCGCCTATCTGCTGGGACAACCCATAGCAGGCTGGCTGTATGAC
GCAACCGGAAACTACGACATGTCCTTCTATGCAGCTGCGACCTTCATCTT
CGTCTCCGTGGCCATTCTTCTCCTCCTCGTACCGAGGAAAGGGGGAAAAT
GGACGCTGGAGTCCGGCGAGCCTGCTCCTGACGAGTGTGACGAAGTGATG
GGACTTAACGGACTTCCAGCTAGACAACTTCTTGTCGATAATGGTACTAC
TGAAACCCTATTGACCTGTGAACTATTGACCTGTGTGTAA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000054 | genome | Sc0000054:1342360..1345608 - |
Properties
| Property Name | Value |
|---|
| Transcript id | BL95522_evm0 |
| Biotype | protein_coding |
|
