transcript:BL95311_evm0 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL95311_evm0
Unique Nametranscript:BL95311_evm0
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL95311_evm0

>transcript:BL95311_evm0-protein ID=transcript:BL95311_evm0-protein|Name=transcript:BL95311_evm0|organism=Branchiostoma lanceolatum|type=polypeptide|length=151bp
IQATDAAELESTLTDNPAPYFGQLVQVKCLPLRPYESFAKELLGVETLFQ
QTGEWAAPGQFYCVTVDIEYAGMMQEELFKIWKQEAIAALGVMEQGGAKL
WKVLTERKVLVLVKMPTPDMLDNTFTVGLPLFKQMGNQCHTTCKAIVPFQ
Y
Run BLAST on NCBI

mRNA from alignment at Sc0000018:3842281..3843710-

Legend: five_prime_UTRexonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL95311_evm0 ID=transcript:BL95311_evm0|Name=transcript:BL95311_evm0|organism=Branchiostoma lanceolatum|type=mRNA|length=1430bp|location=Sequence derived from alignment at Sc0000018:3842281..3843710- (Branchiostoma lanceolatum)
TTATCCAAGCCACGGATGCTGCAGAGCTGGAGTCTACCCTGACAGACAAC CCCGCCCCTTACTTCGGCCAGTTGGTGCAGGTGAAGTGTCTTCCACTGCG TCCTTACGAGTCATTCGCGAAGGAGCTTCTTGGCGTTGAGACTTTGTTTC AACAAACCGGGGAGTGGGCCGCTCCAGGGCAGTTCTACTGTGTAACCGTT GACATCGAGTATGCTGGTAAGGAGTCCTCACATAGTTTTCTTGCTATATT ATTCCCTTTGTGGGAACTTGATCTGTACAATATGAACTGATAAATGAACA AATTTCATAACTCTTATACGATAGGAACTTCATACATGTGACATAAATGT AACTTAGGGAGAGAAACAAGTACAGACAATTATGTAAATTAGGACCTCAT TTTCATCACTAAGAACTTGCCACGGAAATGCCACGATAGCAGCTTAGCAG TAAATGATAGCAATTTTATACATGTACAAGTATTTGTGACATGTACATGA ATGTCAGGTTAACACCATCAGGCATAAGTTATGCATATAATGGGATTATT TCCATATTGGAGAAGAAAATAAGTTTTTGCTGAAGAATGGGGTCATGGAT ATCTGGTGGAAATGTAAATACAAGAATGAATTTTTGTTTAACCATACAAG ACATTGTCAGTAAGGTTTCTTCGTGACATTCTCTCCAAGGTATGATGCAG GAAGAACTGTTTAAGATATGGAAACAGGAGGCCATTGCAGCACTTGGTGT GATGGAACAAGGCGGTGCCAAGCTCTGGAAGGTTTTGACAGAGAGGAAGG TATACAATGTATATGCTCAACTGATAATGACAAAAGATACTGGGAGTTTC ATTGTAAAGGATTACATCTCTTCTCAGCCACATATATCGATTTGGAATTT TGAAATGGCTATCTTTAACTGACAGCCCTTTAATGAGTAGTCTGGCAGAG AAAGGTTATCGGATCATGTTTTAATGGCATTGCTACATTTGTAAGACTTA AAAAATAGCAACATGAAAAAAGTTAGTAGTTTGTCTATGTAAGAAGACAA CATTTCTTCATCTTTAAACAATGAAAGCAAAACTATGTACTTCACATGGA GGGTTAAGGAAAAGGCACTTTACACAATACATTAATTTTGTATTCCTACT ATGACTGTGGAGTGACACCCATCGAGCCTCTTTGGTGACTTATCCGTCAA ATGTGTGCCAAGAAACACACACGGATTTGGTCCGCCAATGTGCCATCATC TGCACATTTGCCACCAAGAGTCGTAAATCTTTAATTTTTTCTACGCAGGT GTTGGTTCTGGTGAAGATGCCAACTCCAGACATGCTCGATAACACCTTCA CCGTGGGACTGCCGCTCTTCAAACAGATGGGGAACCAATGCCACACAACC TGCAAGGCTATTGTACCATTCCAGTACTGA

Coding sequence (CDS) from alignment at Sc0000018:3842281..3843710-

>transcript:BL95311_evm0 ID=transcript:BL95311_evm0|Name=transcript:BL95311_evm0|organism=Branchiostoma lanceolatum|type=CDS|length=1368bp|location=Sequence derived from alignment at Sc0000018:3842281..3843710- (Branchiostoma lanceolatum)
ATCCAAGCCACGGATGCTGCAGAGCTGGAGTCTACCCTGACAGACAACCC
CGCCCCTTACTTCGGCCAGTTGGTGCAGGTGAAGTGTCTTCCACTGCGTC
CTTACGAGTCATTCGCGAAGGAGCTTCTTGGCGTTGAGACTTTGTTTCAA
CAAACCGGGGAGTGGGCCGCTCCAGGGCAGTTCTACTGTGTAACCGTTGA
CATCGAGTATGCTGGTATGATGCAGGAAGAACTGTTTAAGATATGGAAAC
AGGAGGCCATTGCAGCACTTGGTGTGATGGAACAAGGCGGTGCCAAGCTC
TGGAAGGTTTTGACAGAGAGGAAGGTGTTGGTTCTGGTGAAGATGCCAAC
TCCAGACATGCTCGATAACACCTTCACCGTGGGACTGCCGCTCTTCAAAC
AGATGGGGAACCAATGCCACACAACCTGCAAGGCTATTGTACCATTCCAG
TACTGAATCCAAGCCACGGATGCTGCAGAGCTGGAGTCTACCCTGACAGA
CAACCCCGCCCCTTACTTCGGCCAGTTGGTGCAGGTGAAGTGTCTTCCAC
TGCGTCCTTACGAGTCATTCGCGAAGGAGCTTCTTGGCGTTGAGACTTTG
TTTCAACAAACCGGGGAGTGGGCCGCTCCAGGGCAGTTCTACTGTGTAAC
CGTTGACATCGAGTATGCTGGTATGATGCAGGAAGAACTGTTTAAGATAT
GGAAACAGGAGGCCATTGCAGCACTTGGTGTGATGGAACAAGGCGGTGCC
AAGCTCTGGAAGGTTTTGACAGAGAGGAAGGTGTTGGTTCTGGTGAAGAT
GCCAACTCCAGACATGCTCGATAACACCTTCACCGTGGGACTGCCGCTCT
TCAAACAGATGGGGAACCAATGCCACACAACCTGCAAGGCTATTGTACCA
TTCCAGTACTGAATCCAAGCCACGGATGCTGCAGAGCTGGAGTCTACCCT
GACAGACAACCCCGCCCCTTACTTCGGCCAGTTGGTGCAGGTGAAGTGTC
TTCCACTGCGTCCTTACGAGTCATTCGCGAAGGAGCTTCTTGGCGTTGAG
ACTTTGTTTCAACAAACCGGGGAGTGGGCCGCTCCAGGGCAGTTCTACTG
TGTAACCGTTGACATCGAGTATGCTGGTATGATGCAGGAAGAACTGTTTA
AGATATGGAAACAGGAGGCCATTGCAGCACTTGGTGTGATGGAACAAGGC
GGTGCCAAGCTCTGGAAGGTTTTGACAGAGAGGAAGGTGTTGGTTCTGGT
GAAGATGCCAACTCCAGACATGCTCGATAACACCTTCACCGTGGGACTGC
CGCTCTTCAAACAGATGGGGAACCAATGCCACACAACCTGCAAGGCTATT
GTACCATTCCAGTACTGA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL95311gene:BL95311Branchiostoma lanceolatumgene
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL95311_evm0-E1BL95311_evm0-E1-1564476830-140418Branchiostoma lanceolatumexon
BL95311_evm0-E2BL95311_evm0-E2-1564476830-140415Branchiostoma lanceolatumexon
BL95311_evm0-E3BL95311_evm0-E3-1564476830-140413Branchiostoma lanceolatumexon
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL95311_evm0transcript:BL95311_evm0-proteinBranchiostoma lanceolatumpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000018genomeSc0000018:3842281..3843710 -
Properties
Property NameValue
Transcript idBL95311_evm0
Biotypeprotein_coding