transcript:BL95237_evm1 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL95237_evm1
Unique Nametranscript:BL95237_evm1
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL95237_evm1

>transcript:BL95237_evm1-protein ID=transcript:BL95237_evm1-protein|Name=transcript:BL95237_evm1|organism=Branchiostoma lanceolatum|type=polypeptide|length=107bp
MSVPGGWSDPVLFDQTDTDRARSSCSVFRGDVEMGMVNGKFKVFQPISYQ
TQIVEGKNYKILVNVGLDQRVSMIVSWPLGPTGQATGNVTPKLLKAGWEK
DLTQTKK
Run BLAST on NCBI

mRNA from alignment at Sc0000014:1412710..1414144+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL95237_evm1 ID=transcript:BL95237_evm1|Name=transcript:BL95237_evm1|organism=Branchiostoma lanceolatum|type=mRNA|length=1435bp|location=Sequence derived from alignment at Sc0000014:1412710..1414144+ (Branchiostoma lanceolatum)
ATGAGTGTACCAGGAGGTTGGAGCGATCCAGTGCTTTTTGACCAAACTGA TACCGACCGGGCCAGGTCTTCCTGTAGTGTGGTAACTTTTGGAACCAATA ATCACAGCTCTTGTTTGAATTTTATATTCTGTGCCCAAAAACATTCAGCA TCTAAAGTGCCATTCATAATATCAAGCCATAAGAACTTTAGATCTCAATC TTGTAACAACAGTAATTGTTTTATAAATTATTAATGGAAAATCACTGAAT GTGTGATTCTTACATATTGTTTACCGTCTTTTCCTATTCTGATACCTTGC AGTTCCGAGGTGACGTGGAGATGGGGATGGTTAACGGCAAATTCAAAGTA TTCCAACCCATCTCGTACCAGACCCAGATTGTTGAAGGGAAGAACTACAA GATACTGGTAATGTTTTCCTCGGCTGATGCAATATTGTTGTCCTTAAAGG CACCCAGAGCATTTTTTGAGACATGAAAATTAGAAATATTCTAGTTGGTG TAATCTTTATGAAATAGACAATTAATGCCAGTGTTTACCACATTTCATTC AGATTTCTTTTAAAAAGTGCGCAAAAATGGCACAAAATAATGTAAATGGT AATCTTTAAGTTTCACGCGCCTACTGTAAATACTGTAGGTACCATAGCCC CGCCCACCTCCGTCAAAACGAAGAAATGCAAAATCAAAATAAAGGAATGC AAATATTTGACGGACATGCAGTCACTCTCTCATTGGTCTAACCACTAATT GTGAGGGACAGTCAGGATTAGTCTTTTAGGGCTTGAAATTGCTATCAGCT CTCACCACACGACGACATCGTATCTTTGCTCCTTTGATGTCGATATGTAA TGGTATGGTGTTCTTGAAACTTACTATGTGTAGGAATGACTAGAAATTTG AGTTTAAAGTTTCAAGCCTCATAAAATGCTCTGGGTGCCTTTAAATATTT GTTTTCTGTAATGATTTCAACCATTGTTTACTGCCTTTAGTTTCCAGTGT GGGTTTTCTGTTTTTCACACTGTCATGCCAAGTTTGGTGATCAGCAAAAG GGCTACAAAAGTCAACATCCCCGGAGTGTCGAGCACATTTTTTTGCCTGA AAATCTTAGCCGTCACTTTTGACAGGGCTCAGTGACCTGTGAACATTCTT AAAGATTGTGATCGAGAGAACAGCTGCCGTATTGCTGCCGAAAATATCAT TTCAAATATCATGTCTAAATTAGAGCTCACAGACTTATTTTCATCTGTGA TGCAGCTATACCTACTTCGGCTTACATGTGATATTCTGCAATTCCAGGTT AATGTTGGTTTGGACCAACGTGTCAGTATGATCGTGTCCTGGCCACTGGG CCCGACGGGCCAGGCCACTGGGAATGTCACCCCTAAACTGCTGAAAGCGG GGTGGGAGAAAGACCTTACACAGACCAAGAAGTAG

Coding sequence (CDS) from alignment at Sc0000014:1412710..1414144+

>transcript:BL95237_evm1 ID=transcript:BL95237_evm1|Name=transcript:BL95237_evm1|organism=Branchiostoma lanceolatum|type=CDS|length=972bp|location=Sequence derived from alignment at Sc0000014:1412710..1414144+ (Branchiostoma lanceolatum)
ATGAGTGTACCAGGAGGTTGGAGCGATCCAGTGCTTTTTGACCAAACTGA
TACCGACCGGGCCAGGTCTTCCTGTAGTGTGTTCCGAGGTGACGTGGAGA
TGGGGATGGTTAACGGCAAATTCAAAGTATTCCAACCCATCTCGTACCAG
ACCCAGATTGTTGAAGGGAAGAACTACAAGATACTGGTTAATGTTGGTTT
GGACCAACGTGTCAGTATGATCGTGTCCTGGCCACTGGGCCCGACGGGCC
AGGCCACTGGGAATGTCACCCCTAAACTGCTGAAAGCGGGGTGGGAGAAA
GACCTTACACAGACCAAGAAGTAGATGAGTGTACCAGGAGGTTGGAGCGA
TCCAGTGCTTTTTGACCAAACTGATACCGACCGGGCCAGGTCTTCCTGTA
GTGTGTTCCGAGGTGACGTGGAGATGGGGATGGTTAACGGCAAATTCAAA
GTATTCCAACCCATCTCGTACCAGACCCAGATTGTTGAAGGGAAGAACTA
CAAGATACTGGTTAATGTTGGTTTGGACCAACGTGTCAGTATGATCGTGT
CCTGGCCACTGGGCCCGACGGGCCAGGCCACTGGGAATGTCACCCCTAAA
CTGCTGAAAGCGGGGTGGGAGAAAGACCTTACACAGACCAAGAAGTAGAT
GAGTGTACCAGGAGGTTGGAGCGATCCAGTGCTTTTTGACCAAACTGATA
CCGACCGGGCCAGGTCTTCCTGTAGTGTGTTCCGAGGTGACGTGGAGATG
GGGATGGTTAACGGCAAATTCAAAGTATTCCAACCCATCTCGTACCAGAC
CCAGATTGTTGAAGGGAAGAACTACAAGATACTGGTTAATGTTGGTTTGG
ACCAACGTGTCAGTATGATCGTGTCCTGGCCACTGGGCCCGACGGGCCAG
GCCACTGGGAATGTCACCCCTAAACTGCTGAAAGCGGGGTGGGAGAAAGA
CCTTACACAGACCAAGAAGTAG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL95237gene:BL95237Branchiostoma lanceolatumgene
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL95237_evm1-E1BL95237_evm1-E1-1564476830-119713Branchiostoma lanceolatumexon
BL95237_evm1-E2BL95237_evm1-E2-1564476830-119715Branchiostoma lanceolatumexon
BL95237_evm1-E3BL95237_evm1-E3-1564476830-119717Branchiostoma lanceolatumexon
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL95237_evm1transcript:BL95237_evm1-proteinBranchiostoma lanceolatumpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000014genomeSc0000014:1412710..1414144 +
Properties
Property NameValue
Transcript idBL95237_evm1
Biotypeprotein_coding