transcript:BL95231_evm1 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL95231_evm1
Unique Nametranscript:BL95231_evm1
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



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Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL95231_evm1

>transcript:BL95231_evm1-protein ID=transcript:BL95231_evm1-protein|Name=transcript:BL95231_evm1|organism=Branchiostoma lanceolatum|type=polypeptide|length=402bp
MTTTTEIAIPQSEEDIAPSWVQQVLQKDLPGVTITDVHVKGSISEGEGTM
SDIIAFDAEGTRNGASQHYSLVAKLTNFELPLTVMKQFPKDLHIRAETTE
VKFFSDAVPELLSVAIPSTERKSKPKAGNEDDEDNPSADSWLLPKCFFAA
TDRSSMVSVRVMENLKAQGFSIKPDRQPLSREEMMLAVGALAQVHGLSHQ
LEVRSGKPLPEKYDWILTGSDIAAMMARATYQNAVKGFAAAFPDQVDLVA
RLEKLTMDPRLTVEEDSRLKVLCHGDCWLNNIMIKRVGDVPTDARLVDWQ
LPTYKPPTYDLTLLFLCNTTWDVFHNHRDAILAHYHRKLQETLCPFESSG
LQHYTLEELKADFKADCLLGVINRFLRVRMVGLPADQDLLRIIQEIQEWG
VI
Run BLAST on NCBI

mRNA from alignment at Sc0000013:2519069..2520875+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL95231_evm1 ID=transcript:BL95231_evm1|Name=transcript:BL95231_evm1|organism=Branchiostoma lanceolatum|type=mRNA|length=1807bp|location=Sequence derived from alignment at Sc0000013:2519069..2520875+ (Branchiostoma lanceolatum)
ATGACAACGACCACCGAGATCGCCATTCCGCAGTCTGAAGAAGACATCGC
CCCCTCCTGGGTGCAGCAGGTACTGCAGAAGGACCTCCCGGGCGTCACCA
TCACCGACGTCCATGTCAAAGGATCCATCAGTGAAGGCGAGGGAACGATG
AGTGACATCATCGCTTTTGACGCCGAGGGGACAAGGAATGGTGCAAGTCA
GCACTACAGTCTCGTTGCTAAGCTGACAAATTTCGAGCTGCCGTTGACTG
TAATGAAACAGTTTCCAAAAGACCTTCATATCAGAGCCGAGACGACTGAA
GTTAAGTTTTTCTCCGACGCTGTGCCAGAGCTCCTATCTGTGGCAATCCC
GAGCACAGAGCGCAAATCCAAGCCTAAGGCAGGGAATGAAGATGACGAAG
ACAACCCTTCTGCTGATTCCTGGCTCCTCCCCAAATGCTTCTTCGCCGCC
ACCGATCGAAGCTCCATGGTGTCCGTCAGGGTCATGGAAAACCTGAAAGC
TCAGGGGTTCTCCATAAAACCCGACCGCCAACCGCTGAGCCGCGAGGAGA
TGATGCTGGCAGTCGGGGCCCTGGCGCAGGTCCACGGCCTGTCACATCAG
CTGGAGGTCCGTTCGGGTAAACCCCTTCCTGAGAAGTACGACTGGATCCT
GACTGGCTCAGATATAGCAGCTATGATGGCTCGGGCAACCTATCAGAACG
CAGTGAAGGGATTCGCCGCAGCTTTTCCTGACCAGGTAGATCTTGTAGCT
CGTCTGGAAAAGTTGACTATGGACCCCCGGTTGACTGTGGAGGAGGACTC
AAGACTAAAGGTGCTTTGCCACGGAGACTGTTGGCTCAATAACATCATGA
TCAAGGTAGGACTTCACACTTATTTCTTCCTTGTTGAAATGTAAATATTG
TGATTTCTTATTGTGTTTTGCTTGTTTAACTGCGGTCTTTGTCCCAAACA
CAGCGCGTTGGAGATGTGCCCACTGACGCAAGGTTGGTGGACTGGCAGTT
ACCCACATACAAGCCGCCAACCTATGACCTGACGCTCCTGTTCCTCTGCA
ACACGACTTGGGACGTCTTCCACAACCACAGGGACGCCATCCTGGCCCAC
TATCACCGCAAACTGCAGGAGACTCTTTGTCCATTCGGTGAGAGTCTTCA
TTATATATTACTGTGTACACATTTACAGCAAAACGTAAAAGTTGGATGCT
ACGTGTTCTTTATTTTGTTTTTGCATTATTGTCATAGTGTTATGTAGCAA
GATGTTTTAGTAATAACCACAGGAAGATCTATCCGCTGGGGGTCCATCAG
AGACACCAGCTGGACATCTGTAACCGATTGATATCAATAAATCAGAATGA
CACCCGTCTGTCTAGTCAAGAATGGATACAGGAACACTGGGTCCCTGCTC
TTTATTGATCGCTAAATGGTTACAGGCGTCTGGTGACTCTGAACACCCAT
GGAGAAATTCCTGTTATCACAGCTACACATCTTGCACAGTAAATGTCTCC
ACTACCATACTCCCCCGTACACTAGAAGTCGTCCCGACTTCTTTAAGATA
ATTATTAATACCTCACCAATTAAGAAGAAGGAATATCGATGTGTGGTTGT
GATAGTACACGTTCCAACGGATACCATTTTCTTCTAGAATCCTCTGGCCT
ACAACACTACACGCTGGAAGAGTTGAAGGCCGACTTCAAAGCCGACTGTC
TGCTGGGGGTGATCAACCGTTTCCTACGCGTACGCATGGTGGGCCTGCCT
GCCGACCAGGATCTACTACGGATTATACAGGAGATCCAGGAGTGGGGGGT
CATCTAA

Coding sequence (CDS) from alignment at Sc0000013:2519069..2520875+

>transcript:BL95231_evm1 ID=transcript:BL95231_evm1|Name=transcript:BL95231_evm1|organism=Branchiostoma lanceolatum|type=CDS|length=3627bp|location=Sequence derived from alignment at Sc0000013:2519069..2520875+ (Branchiostoma lanceolatum)
ATGACAACGACCACCGAGATCGCCATTCCGCAGTCTGAAGAAGACATCGC
CCCCTCCTGGGTGCAGCAGGTACTGCAGAAGGACCTCCCGGGCGTCACCA
TCACCGACGTCCATGTCAAAGGATCCATCAGTGAAGGCGAGGGAACGATG
AGTGACATCATCGCTTTTGACGCCGAGGGGACAAGGAATGGTGCAAGTCA
GCACTACAGTCTCGTTGCTAAGCTGACAAATTTCGAGCTGCCGTTGACTG
TAATGAAACAGTTTCCAAAAGACCTTCATATCAGAGCCGAGACGACTGAA
GTTAAGTTTTTCTCCGACGCTGTGCCAGAGCTCCTATCTGTGGCAATCCC
GAGCACAGAGCGCAAATCCAAGCCTAAGGCAGGGAATGAAGATGACGAAG
ACAACCCTTCTGCTGATTCCTGGCTCCTCCCCAAATGCTTCTTCGCCGCC
ACCGATCGAAGCTCCATGGTGTCCGTCAGGGTCATGGAAAACCTGAAAGC
TCAGGGGTTCTCCATAAAACCCGACCGCCAACCGCTGAGCCGCGAGGAGA
TGATGCTGGCAGTCGGGGCCCTGGCGCAGGTCCACGGCCTGTCACATCAG
CTGGAGGTCCGTTCGGGTAAACCCCTTCCTGAGAAGTACGACTGGATCCT
GACTGGCTCAGATATAGCAGCTATGATGGCTCGGGCAACCTATCAGAACG
CAGTGAAGGGATTCGCCGCAGCTTTTCCTGACCAGGTAGATCTTGTAGCT
CGTCTGGAAAAGTTGACTATGGACCCCCGGTTGACTGTGGAGGAGGACTC
AAGACTAAAGGTGCTTTGCCACGGAGACTGTTGGCTCAATAACATCATGA
TCAAGCGCGTTGGAGATGTGCCCACTGACGCAAGGTTGGTGGACTGGCAG
TTACCCACATACAAGCCGCCAACCTATGACCTGACGCTCCTGTTCCTCTG
CAACACGACTTGGGACGTCTTCCACAACCACAGGGACGCCATCCTGGCCC
ACTATCACCGCAAACTGCAGGAGACTCTTTGTCCATTCGAATCCTCTGGC
CTACAACACTACACGCTGGAAGAGTTGAAGGCCGACTTCAAAGCCGACTG
TCTGCTGGGGGTGATCAACCGTTTCCTACGCGTACGCATGGTGGGCCTGC
CTGCCGACCAGGATCTACTACGGATTATACAGGAGATCCAGGAGTGGGGG
GTCATCTAAATGACAACGACCACCGAGATCGCCATTCCGCAGTCTGAAGA
AGACATCGCCCCCTCCTGGGTGCAGCAGGTACTGCAGAAGGACCTCCCGG
GCGTCACCATCACCGACGTCCATGTCAAAGGATCCATCAGTGAAGGCGAG
GGAACGATGAGTGACATCATCGCTTTTGACGCCGAGGGGACAAGGAATGG
TGCAAGTCAGCACTACAGTCTCGTTGCTAAGCTGACAAATTTCGAGCTGC
CGTTGACTGTAATGAAACAGTTTCCAAAAGACCTTCATATCAGAGCCGAG
ACGACTGAAGTTAAGTTTTTCTCCGACGCTGTGCCAGAGCTCCTATCTGT
GGCAATCCCGAGCACAGAGCGCAAATCCAAGCCTAAGGCAGGGAATGAAG
ATGACGAAGACAACCCTTCTGCTGATTCCTGGCTCCTCCCCAAATGCTTC
TTCGCCGCCACCGATCGAAGCTCCATGGTGTCCGTCAGGGTCATGGAAAA
CCTGAAAGCTCAGGGGTTCTCCATAAAACCCGACCGCCAACCGCTGAGCC
GCGAGGAGATGATGCTGGCAGTCGGGGCCCTGGCGCAGGTCCACGGCCTG
TCACATCAGCTGGAGGTCCGTTCGGGTAAACCCCTTCCTGAGAAGTACGA
CTGGATCCTGACTGGCTCAGATATAGCAGCTATGATGGCTCGGGCAACCT
ATCAGAACGCAGTGAAGGGATTCGCCGCAGCTTTTCCTGACCAGGTAGAT
CTTGTAGCTCGTCTGGAAAAGTTGACTATGGACCCCCGGTTGACTGTGGA
GGAGGACTCAAGACTAAAGGTGCTTTGCCACGGAGACTGTTGGCTCAATA
ACATCATGATCAAGCGCGTTGGAGATGTGCCCACTGACGCAAGGTTGGTG
GACTGGCAGTTACCCACATACAAGCCGCCAACCTATGACCTGACGCTCCT
GTTCCTCTGCAACACGACTTGGGACGTCTTCCACAACCACAGGGACGCCA
TCCTGGCCCACTATCACCGCAAACTGCAGGAGACTCTTTGTCCATTCGAA
TCCTCTGGCCTACAACACTACACGCTGGAAGAGTTGAAGGCCGACTTCAA
AGCCGACTGTCTGCTGGGGGTGATCAACCGTTTCCTACGCGTACGCATGG
TGGGCCTGCCTGCCGACCAGGATCTACTACGGATTATACAGGAGATCCAG
GAGTGGGGGGTCATCTAAATGACAACGACCACCGAGATCGCCATTCCGCA
GTCTGAAGAAGACATCGCCCCCTCCTGGGTGCAGCAGGTACTGCAGAAGG
ACCTCCCGGGCGTCACCATCACCGACGTCCATGTCAAAGGATCCATCAGT
GAAGGCGAGGGAACGATGAGTGACATCATCGCTTTTGACGCCGAGGGGAC
AAGGAATGGTGCAAGTCAGCACTACAGTCTCGTTGCTAAGCTGACAAATT
TCGAGCTGCCGTTGACTGTAATGAAACAGTTTCCAAAAGACCTTCATATC
AGAGCCGAGACGACTGAAGTTAAGTTTTTCTCCGACGCTGTGCCAGAGCT
CCTATCTGTGGCAATCCCGAGCACAGAGCGCAAATCCAAGCCTAAGGCAG
GGAATGAAGATGACGAAGACAACCCTTCTGCTGATTCCTGGCTCCTCCCC
AAATGCTTCTTCGCCGCCACCGATCGAAGCTCCATGGTGTCCGTCAGGGT
CATGGAAAACCTGAAAGCTCAGGGGTTCTCCATAAAACCCGACCGCCAAC
CGCTGAGCCGCGAGGAGATGATGCTGGCAGTCGGGGCCCTGGCGCAGGTC
CACGGCCTGTCACATCAGCTGGAGGTCCGTTCGGGTAAACCCCTTCCTGA
GAAGTACGACTGGATCCTGACTGGCTCAGATATAGCAGCTATGATGGCTC
GGGCAACCTATCAGAACGCAGTGAAGGGATTCGCCGCAGCTTTTCCTGAC
CAGGTAGATCTTGTAGCTCGTCTGGAAAAGTTGACTATGGACCCCCGGTT
GACTGTGGAGGAGGACTCAAGACTAAAGGTGCTTTGCCACGGAGACTGTT
GGCTCAATAACATCATGATCAAGCGCGTTGGAGATGTGCCCACTGACGCA
AGGTTGGTGGACTGGCAGTTACCCACATACAAGCCGCCAACCTATGACCT
GACGCTCCTGTTCCTCTGCAACACGACTTGGGACGTCTTCCACAACCACA
GGGACGCCATCCTGGCCCACTATCACCGCAAACTGCAGGAGACTCTTTGT
CCATTCGAATCCTCTGGCCTACAACACTACACGCTGGAAGAGTTGAAGGC
CGACTTCAAAGCCGACTGTCTGCTGGGGGTGATCAACCGTTTCCTACGCG
TACGCATGGTGGGCCTGCCTGCCGACCAGGATCTACTACGGATTATACAG
GAGATCCAGGAGTGGGGGGTCATCTAA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL95231gene:BL95231Branchiostoma lanceolatumgene
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL95231_evm1-E1BL95231_evm1-E1-1564476830-116378Branchiostoma lanceolatumexon
BL95231_evm1-E2BL95231_evm1-E2-1564476830-116380Branchiostoma lanceolatumexon
BL95231_evm1-E3BL95231_evm1-E3-1564476830-116382Branchiostoma lanceolatumexon
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL95231_evm1transcript:BL95231_evm1-proteinBranchiostoma lanceolatumpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000013genomeSc0000013:2519069..2520875 +
Properties
Property NameValue
Transcript idBL95231_evm1
Biotypeprotein_coding