transcript:BL95135_evm1 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL95135_evm1
Unique Nametranscript:BL95135_evm1
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL95135_evm1

>transcript:BL95135_evm1-protein ID=transcript:BL95135_evm1-protein|Name=transcript:BL95135_evm1|organism=Branchiostoma lanceolatum|type=polypeptide|length=163bp
MQQCSRREGTAGVTAANEEVESLTSNVRTLGLNKDSTYTEKSASRGQLDS
LSRYARCLHHDRRWFPSKKDNTYALADCDRRGQKRQRRYRLVQPKRFESA
SGERHVLYLCSCDIAQEQNGRLSAMDKVVTGEDLRAFAMREEGRYCLHAR
AASCTRMRRRRLL
Run BLAST on NCBI

mRNA from alignment at Sc0000006:595977..597427-

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL95135_evm1 ID=transcript:BL95135_evm1|Name=transcript:BL95135_evm1|organism=Branchiostoma lanceolatum|type=mRNA|length=1451bp|location=Sequence derived from alignment at Sc0000006:595977..597427- (Branchiostoma lanceolatum)
ATGCAACAATGCAGTCGGCGCGAGGGAACGGCTGGTGTAACTGCGGCCAA CGAGGAAGTTGAGAGCCTGACTTCTAACGTTCGAACATTGGGTCTGAACA AGGATTCAACTTATACGGAAAAGTAAGTGTATAAGTTACTTCCCTTCGTG CACGACATTAGGAAGATGGATGTAGTTTTTCTTTAATTTTCTCAATACAC TTAGTTAATGCGCTTTACTTGTGTAAGTTATTTGCCGATGGCTAATTGCA ACTCCCGAAATAGTACATAGAAAGAGTATACAGACAGCGCAACTAAGCTT TTGCGGTTTGACTTTCTTGAATCAGTGGAATTTGAAGTGCCTTCTGTAAT GAGCGGGCTTTGGGAAGTTAGCAGGGCTGTGGTTTTCTTTTCGTCAGTCC TGAAGTTTGAAAATTGCGTTGAGTTTTGGCGGCTTCCTTTTAGAGCTCTT TCTTCCCCTGATCGTTAGAGGGGCAGTTCGAGATAAACTGTATTTCGTCT TCCGCCGCTTTTAACATGATACAGTAATTTCAAATCCTTTCCCTCCACAG GTAATTTCACATATTAAAGGATTACTTTTTGCTATTTTTCAGATCCGCAA GCCGTGGCCAGTTGGATTCATTGTCGCGGTATGCGAGGTGCTTGCACCAC GACCGTAGGTGGTTTCCCTCGAAAAAGGATAACACCTATGCCCTAGCAGA CTGTGACAGGAGAGGACAAAAAAGGCAGCGGCGCTACCGGCTGGTTCAGC CGAAGCGATTCGAGTCAGCCTCCGGGGAACGCCACGTGCTGTACCTGTGC TCGTGTGACATCGCACAGGAACAGAACGGCCGTCTGTCAGCCATGGACAA AGTAGTGGTAAGTGTCATTTGTTGAATATATCTAAGTGTGCGATGGTTTT ATGGTCGCGGTTTTCGTGGTGACCTCACCGCGAACTCACACCCGCAAACA TTTGTGTTCTTTCTTATAACATCTTCGTAACTATACATCGTACTGTGTTA TTTTGTGTTCGAGGAGATTGTTCTGTCCGTCTGTAGCATCCTTGCCGAGT TGCTAGTAGCTTGTTGTCGACTAGCTGTCCAAAAAGGCGTTCCCATTACT ATAGCAGTATGTGACTAACGTGCTATCGCGAACTCAAAACCACGGTATAT GTAAACACTAGTTCCATTTTGTCCTTACCGCGATATCAAATCACCACGAA CTTGCAATGAAGAGGAAAATGTAACAGGTTCAAGTTCAATATGATACTTC AGTACTACTTGTACAACATCTCCATCTAAAACATTGTATTTGGTTTTGTC TACCATGTACCAGATGTGCTAATGACCTCCTATTATCTACTTCCAGACGG GTGAGGATCTGCGAGCCTTTGCCATGCGGGAGGAGGGTCGGTACTGTCTT CACGCCCGGGCTGCCAGCTGCACACGTATGCGTCGAAGAAGACTCTTGTA G

Coding sequence (CDS) from alignment at Sc0000006:595977..597427-

>transcript:BL95135_evm1 ID=transcript:BL95135_evm1|Name=transcript:BL95135_evm1|organism=Branchiostoma lanceolatum|type=CDS|length=1476bp|location=Sequence derived from alignment at Sc0000006:595977..597427- (Branchiostoma lanceolatum)
ATGCAACAATGCAGTCGGCGCGAGGGAACGGCTGGTGTAACTGCGGCCAA
CGAGGAAGTTGAGAGCCTGACTTCTAACGTTCGAACATTGGGTCTGAACA
AGGATTCAACTTATACGGAAAAATCCGCAAGCCGTGGCCAGTTGGATTCA
TTGTCGCGGTATGCGAGGTGCTTGCACCACGACCGTAGGTGGTTTCCCTC
GAAAAAGGATAACACCTATGCCCTAGCAGACTGTGACAGGAGAGGACAAA
AAAGGCAGCGGCGCTACCGGCTGGTTCAGCCGAAGCGATTCGAGTCAGCC
TCCGGGGAACGCCACGTGCTGTACCTGTGCTCGTGTGACATCGCACAGGA
ACAGAACGGCCGTCTGTCAGCCATGGACAAAGTAGTGACGGGTGAGGATC
TGCGAGCCTTTGCCATGCGGGAGGAGGGTCGGTACTGTCTTCACGCCCGG
GCTGCCAGCTGCACACGTATGCGTCGAAGAAGACTCTTGTAGATGCAACA
ATGCAGTCGGCGCGAGGGAACGGCTGGTGTAACTGCGGCCAACGAGGAAG
TTGAGAGCCTGACTTCTAACGTTCGAACATTGGGTCTGAACAAGGATTCA
ACTTATACGGAAAAATCCGCAAGCCGTGGCCAGTTGGATTCATTGTCGCG
GTATGCGAGGTGCTTGCACCACGACCGTAGGTGGTTTCCCTCGAAAAAGG
ATAACACCTATGCCCTAGCAGACTGTGACAGGAGAGGACAAAAAAGGCAG
CGGCGCTACCGGCTGGTTCAGCCGAAGCGATTCGAGTCAGCCTCCGGGGA
ACGCCACGTGCTGTACCTGTGCTCGTGTGACATCGCACAGGAACAGAACG
GCCGTCTGTCAGCCATGGACAAAGTAGTGACGGGTGAGGATCTGCGAGCC
TTTGCCATGCGGGAGGAGGGTCGGTACTGTCTTCACGCCCGGGCTGCCAG
CTGCACACGTATGCGTCGAAGAAGACTCTTGTAGATGCAACAATGCAGTC
GGCGCGAGGGAACGGCTGGTGTAACTGCGGCCAACGAGGAAGTTGAGAGC
CTGACTTCTAACGTTCGAACATTGGGTCTGAACAAGGATTCAACTTATAC
GGAAAAATCCGCAAGCCGTGGCCAGTTGGATTCATTGTCGCGGTATGCGA
GGTGCTTGCACCACGACCGTAGGTGGTTTCCCTCGAAAAAGGATAACACC
TATGCCCTAGCAGACTGTGACAGGAGAGGACAAAAAAGGCAGCGGCGCTA
CCGGCTGGTTCAGCCGAAGCGATTCGAGTCAGCCTCCGGGGAACGCCACG
TGCTGTACCTGTGCTCGTGTGACATCGCACAGGAACAGAACGGCCGTCTG
TCAGCCATGGACAAAGTAGTGACGGGTGAGGATCTGCGAGCCTTTGCCAT
GCGGGAGGAGGGTCGGTACTGTCTTCACGCCCGGGCTGCCAGCTGCACAC
GTATGCGTCGAAGAAGACTCTTGTAG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL95135gene:BL95135Branchiostoma lanceolatumgene
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL95135_evm1-E1BL95135_evm1-E1-1564476830-66124Branchiostoma lanceolatumexon
BL95135_evm1-E2BL95135_evm1-E2-1564476830-66122Branchiostoma lanceolatumexon
BL95135_evm1-E3BL95135_evm1-E3-1564476830-66120Branchiostoma lanceolatumexon
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL95135_evm1transcript:BL95135_evm1-proteinBranchiostoma lanceolatumpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000006genomeSc0000006:595977..597427 -
Properties
Property NameValue
Transcript idBL95135_evm1
Biotypeprotein_coding