transcript:BL95130_evm0 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL95130_evm0
Unique Nametranscript:BL95130_evm0
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



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Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL95130_evm0

>transcript:BL95130_evm0-protein ID=transcript:BL95130_evm0-protein|Name=transcript:BL95130_evm0|organism=Branchiostoma lanceolatum|type=polypeptide|length=199bp
MAPKYKLTYFNARARGELVRLIFAAAGVEFEDVRFDYEQWAAFKESTPMG
QIPVLEVEGRTMCQSLAIARYVARETGLCGKTSWAEAQVDMFVCGADDLL
TKLLNVRFEKDEATKEEGKKGLATYVPNFLANYEKLCGPEGYLVGTSLTY
ADLAFFEVMHDILKVTTLDKYPKLAKVVQSVTTDKGVSAWLAKRPDNPS
Run BLAST on NCBI

mRNA from alignment at Sc0000006:4915301..4917561+

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL95130_evm0 ID=transcript:BL95130_evm0|Name=transcript:BL95130_evm0|organism=Branchiostoma lanceolatum|type=mRNA|length=2261bp|location=Sequence derived from alignment at Sc0000006:4915301..4917561+ (Branchiostoma lanceolatum)
ATGGCGCCTAAGTACAAGTTAACGTACTTCAACGCGAGAGCGCGCGGCGA
ACTGGTCAGGCTGATCTTCGCAGCGGCAGGAGTGGAGTTCGAGGATGTCA
GGTTCGACTACGAACAGTGGGCTGCCTTCAAGGAATGTGAGTTTTCTGTG
TATTTCGACATTTTGGAAATACAGAAATAGCCTTGAAAATTCAAAACTAC
GTCTCTATGTGATCTGGCCACGTACATGAGCGGTGTTGAGCCGCGCCGCA
TTACATTGTCAGCCATGGAAACAGCGAAACGCCTCGCCTGTGTTAGCTCC
TGTTGCTGTCATGGGCTGATTGGGCCTCCTCCCCGAGAACATGTATCCGT
TCAGCTTCAACTCGAATCATTCCCATTCCCAGAACTATGAATAGGAGCTC
AGGATCCTCTGTCACTGTGGTAGTCAGTCATCGCAGTCTCCAACACCATA
GTAACAGACGATTTTCAGTCTTACAACAATTGGTCATGGTTAGCACAAAT
AGGGCTGTTTAGCCATAGTCGATGCTGTAGGGCTGTTGTGAATTAGGATT
TTACCATGGTCAATACTGACCGACGGAGGCCAGCACAAATCAACAAGGTT
AGGGTGTTCTTTTGACTTAGAGGTGTTGGCTTTCAAGTTTCTAGGGGCAA
GACCAGCGGAAGGGCTGCTACTTTTGTAGATCATAGAAGCGTGATTTAGC
CAGGCTACGCGTCGCCACAGTACAGTACAGGGTAGCTACCATTTAATTAA
ACCACCGCCTGTGTGTCAATAACCATCCACGCGCCCATGTATTTGCCAGA
GTACGTATCTCCCAAGACATACAGTTTGGATAACAATTGCTTGTCTGTCC
GTTTTGTAGCAACACCAATGGGACAGATACCAGTTCTGGAGGTGGAAGGC
CGGACGATGTGCCAAAGTCTGGCGATAGCTCGCTACGTTGCCAGGGAAAC
AGGTAATATTTTCCTCTGTCACCTCGAAAAACTACACTACAAGCATCAAC
AACAATTTGGTTCTTAGAGACTTACCCATTTCAACACGATCATTGAGGTT
AATCTTTAACGAACAGATGCAAATCAAATGTACAAATAAGTTTTTACTTC
GTATTCATGCACACTTCGGGTCATGATCACTTCTTTGTTGGGATGTTAAA
ATGTGGCACTACACGCTTCGAAATGATACCATCTAGTCATCCATTCAAAG
CATTTATGATGAAAGTTCTTACATAGGCAACATGTGTGGTAGACAAAGAA
GTGTAAATGACATTTGTTTGTTTTGCGTATTGTATACCCGGTAAACCACC
ACATGGCGTAACACACCAGGTTTGTACTGAAGAGTACAAGCTGCATATCA
GGTAAACCGCCTCATGGCGTAACACACCAGGTTTGCACTGAAGAGTACAA
GCTACATATCCGGACAGATCTACTTCACCTACAGTCTGTTGATACCTAAC
CCACAGGTCTGTGCGGGAAAACCAGCTGGGCGGAGGCGCAAGTCGACATG
TTTGTGTGCGGCGCTGACGACCTCCTCACCAAGCTTCTCAATGTTCGTTT
CGAAAAAGACGAGGCCACGAAGGTACTTATTAACTATTTCATCATATTCG
TCTTTAATAATTCTTGCAAGCTTGCAAGCTTTCTGCCGTCCTTGCACATT
TATAATATGATTTTATCATTGTTTTCACTTATTGTATCTTTAATGTGTGC
TAAATAAACAATAAACAAATAAACCTTATTTTGATTGATGGGCGTCTTTT
TCAGGAAGAAGGTAAGAAGGGCCTGGCCACCTATGTCCCCAACTTTCTCG
CTAACTACGAGAAACTCTGTGGACCCGAGGGATACCTGGTTGGAACCAGT
GTGAGTACCAGCCATAAATACTATAATTTATCCATACAATAGCAACAATA
CGTTTAACTTTAACTAGAAAAGCTTATGGAGATGTCGGATACTTTCGTGA
ATAATCTGATTTCTTTCGGCTTCGAATGGCAGAGTTTCTTAGAGGTTGCC
TGTGTCTCATGCAAAGATGATACACCAGTTTTGTAAGCTCTTTCATTACG
AATCGATATATGTATATGCATTGACTCTTCAGAGTTTTCCCTTTTCATAC
AGTTGACCTACGCTGACTTGGCCTTCTTCGAAGTCATGCATGACATACTG
AAAGTGACCACCCTGGACAAATATCCCAAACTGGCCAAGGTTGTGCAGAG
CGTCACAACGGACAAGGGAGTGTCTGCCTGGCTCGCCAAGCGTCCGGACA
ATCCCTCGTAA

Coding sequence (CDS) from alignment at Sc0000006:4915301..4917561+

>transcript:BL95130_evm0 ID=transcript:BL95130_evm0|Name=transcript:BL95130_evm0|organism=Branchiostoma lanceolatum|type=CDS|length=3000bp|location=Sequence derived from alignment at Sc0000006:4915301..4917561+ (Branchiostoma lanceolatum)
ATGGCGCCTAAGTACAAGTTAACGTACTTCAACGCGAGAGCGCGCGGCGA
ACTGGTCAGGCTGATCTTCGCAGCGGCAGGAGTGGAGTTCGAGGATGTCA
GGTTCGACTACGAACAGTGGGCTGCCTTCAAGGAATCAACACCAATGGGA
CAGATACCAGTTCTGGAGGTGGAAGGCCGGACGATGTGCCAAAGTCTGGC
GATAGCTCGCTACGTTGCCAGGGAAACAGGTCTGTGCGGGAAAACCAGCT
GGGCGGAGGCGCAAGTCGACATGTTTGTGTGCGGCGCTGACGACCTCCTC
ACCAAGCTTCTCAATGTTCGTTTCGAAAAAGACGAGGCCACGAAGGAAGA
AGGTAAGAAGGGCCTGGCCACCTATGTCCCCAACTTTCTCGCTAACTACG
AGAAACTCTGTGGACCCGAGGGATACCTGGTTGGAACCAGTTTGACCTAC
GCTGACTTGGCCTTCTTCGAAGTCATGCATGACATACTGAAAGTGACCAC
CCTGGACAAATATCCCAAACTGGCCAAGGTTGTGCAGAGCGTCACAACGG
ACAAGGGAGTGTCTGCCTGGCTCGCCAAGCGTCCGGACAATCCCTCGTAA
ATGGCGCCTAAGTACAAGTTAACGTACTTCAACGCGAGAGCGCGCGGCGA
ACTGGTCAGGCTGATCTTCGCAGCGGCAGGAGTGGAGTTCGAGGATGTCA
GGTTCGACTACGAACAGTGGGCTGCCTTCAAGGAATCAACACCAATGGGA
CAGATACCAGTTCTGGAGGTGGAAGGCCGGACGATGTGCCAAAGTCTGGC
GATAGCTCGCTACGTTGCCAGGGAAACAGGTCTGTGCGGGAAAACCAGCT
GGGCGGAGGCGCAAGTCGACATGTTTGTGTGCGGCGCTGACGACCTCCTC
ACCAAGCTTCTCAATGTTCGTTTCGAAAAAGACGAGGCCACGAAGGAAGA
AGGTAAGAAGGGCCTGGCCACCTATGTCCCCAACTTTCTCGCTAACTACG
AGAAACTCTGTGGACCCGAGGGATACCTGGTTGGAACCAGTTTGACCTAC
GCTGACTTGGCCTTCTTCGAAGTCATGCATGACATACTGAAAGTGACCAC
CCTGGACAAATATCCCAAACTGGCCAAGGTTGTGCAGAGCGTCACAACGG
ACAAGGGAGTGTCTGCCTGGCTCGCCAAGCGTCCGGACAATCCCTCGTAA
ATGGCGCCTAAGTACAAGTTAACGTACTTCAACGCGAGAGCGCGCGGCGA
ACTGGTCAGGCTGATCTTCGCAGCGGCAGGAGTGGAGTTCGAGGATGTCA
GGTTCGACTACGAACAGTGGGCTGCCTTCAAGGAATCAACACCAATGGGA
CAGATACCAGTTCTGGAGGTGGAAGGCCGGACGATGTGCCAAAGTCTGGC
GATAGCTCGCTACGTTGCCAGGGAAACAGGTCTGTGCGGGAAAACCAGCT
GGGCGGAGGCGCAAGTCGACATGTTTGTGTGCGGCGCTGACGACCTCCTC
ACCAAGCTTCTCAATGTTCGTTTCGAAAAAGACGAGGCCACGAAGGAAGA
AGGTAAGAAGGGCCTGGCCACCTATGTCCCCAACTTTCTCGCTAACTACG
AGAAACTCTGTGGACCCGAGGGATACCTGGTTGGAACCAGTTTGACCTAC
GCTGACTTGGCCTTCTTCGAAGTCATGCATGACATACTGAAAGTGACCAC
CCTGGACAAATATCCCAAACTGGCCAAGGTTGTGCAGAGCGTCACAACGG
ACAAGGGAGTGTCTGCCTGGCTCGCCAAGCGTCCGGACAATCCCTCGTAA
ATGGCGCCTAAGTACAAGTTAACGTACTTCAACGCGAGAGCGCGCGGCGA
ACTGGTCAGGCTGATCTTCGCAGCGGCAGGAGTGGAGTTCGAGGATGTCA
GGTTCGACTACGAACAGTGGGCTGCCTTCAAGGAATCAACACCAATGGGA
CAGATACCAGTTCTGGAGGTGGAAGGCCGGACGATGTGCCAAAGTCTGGC
GATAGCTCGCTACGTTGCCAGGGAAACAGGTCTGTGCGGGAAAACCAGCT
GGGCGGAGGCGCAAGTCGACATGTTTGTGTGCGGCGCTGACGACCTCCTC
ACCAAGCTTCTCAATGTTCGTTTCGAAAAAGACGAGGCCACGAAGGAAGA
AGGTAAGAAGGGCCTGGCCACCTATGTCCCCAACTTTCTCGCTAACTACG
AGAAACTCTGTGGACCCGAGGGATACCTGGTTGGAACCAGTTTGACCTAC
GCTGACTTGGCCTTCTTCGAAGTCATGCATGACATACTGAAAGTGACCAC
CCTGGACAAATATCCCAAACTGGCCAAGGTTGTGCAGAGCGTCACAACGG
ACAAGGGAGTGTCTGCCTGGCTCGCCAAGCGTCCGGACAATCCCTCGTAA
ATGGCGCCTAAGTACAAGTTAACGTACTTCAACGCGAGAGCGCGCGGCGA
ACTGGTCAGGCTGATCTTCGCAGCGGCAGGAGTGGAGTTCGAGGATGTCA
GGTTCGACTACGAACAGTGGGCTGCCTTCAAGGAATCAACACCAATGGGA
CAGATACCAGTTCTGGAGGTGGAAGGCCGGACGATGTGCCAAAGTCTGGC
GATAGCTCGCTACGTTGCCAGGGAAACAGGTCTGTGCGGGAAAACCAGCT
GGGCGGAGGCGCAAGTCGACATGTTTGTGTGCGGCGCTGACGACCTCCTC
ACCAAGCTTCTCAATGTTCGTTTCGAAAAAGACGAGGCCACGAAGGAAGA
AGGTAAGAAGGGCCTGGCCACCTATGTCCCCAACTTTCTCGCTAACTACG
AGAAACTCTGTGGACCCGAGGGATACCTGGTTGGAACCAGTTTGACCTAC
GCTGACTTGGCCTTCTTCGAAGTCATGCATGACATACTGAAAGTGACCAC
CCTGGACAAATATCCCAAACTGGCCAAGGTTGTGCAGAGCGTCACAACGG
ACAAGGGAGTGTCTGCCTGGCTCGCCAAGCGTCCGGACAATCCCTCGTAA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL95130gene:BL95130Branchiostoma lanceolatumgene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL95130_evm0transcript:BL95130_evm0-proteinBranchiostoma lanceolatumpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL95130_evm0-E1BL95130_evm0-E1-1564476830-70635Branchiostoma lanceolatumexon
BL95130_evm0-E2BL95130_evm0-E2-1564476830-70637Branchiostoma lanceolatumexon
BL95130_evm0-E3BL95130_evm0-E3-1564476830-70639Branchiostoma lanceolatumexon
BL95130_evm0-E4BL95130_evm0-E4-1564476830-70641Branchiostoma lanceolatumexon
BL95130_evm0-E5BL95130_evm0-E5-1564476830-70643Branchiostoma lanceolatumexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000006genomeSc0000006:4915301..4917561 +
Properties
Property NameValue
Transcript idBL95130_evm0
Biotypeprotein_coding