transcript:BL95127_evm2 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL95127_evm2
Unique Nametranscript:BL95127_evm2
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



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Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL95127_evm2

>transcript:BL95127_evm2-protein ID=transcript:BL95127_evm2-protein|Name=transcript:BL95127_evm2|organism=Branchiostoma lanceolatum|type=polypeptide|length=207bp
MAPKYKLTYFDVRSRGEPTRLIFAAAGVEYEDVRLTFEEWPPIKPTTPMG
NLPILEVDGVTLSQSMSIARFVARETGLDGKNKLERAQADAFVDELEEPL
AAKLPVLLGFTTDEKEKEEKAKEVDQLIEEKLGKCEKLSGSNGYLVGNSL
LWCDLVFYNIAYYIEVYKPGTLQNYPKLAKVYATVKANPRIAKWIAEGQA
GHYQYGV
Run BLAST on NCBI

mRNA from alignment at Sc0000006:4881145..4883391+

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL95127_evm2 ID=transcript:BL95127_evm2|Name=transcript:BL95127_evm2|organism=Branchiostoma lanceolatum|type=mRNA|length=2247bp|location=Sequence derived from alignment at Sc0000006:4881145..4883391+ (Branchiostoma lanceolatum)
ATGGCTCCAAAGTACAAGCTGACTTACTTTGACGTCCGATCTCGTGGCGA
ACCCACCAGGCTGATTTTTGCCGCCGCCGGAGTGGAGTACGAGGATGTCA
GGCTAACGTTTGAGGAGTGGCCGCCTATCAAACCGAGTAAGTCATGATAC
AATACTGGTCTGTGGGGGTATAGCGTTCGTGTTGCATTCGTGAATCAAGG
TCGGAGGGGGGGGGGGGCTAAATAAAAAACAGGTCATACCAAATCTTCAA
AAATGGTGCTTTATTCTCTGCGAATGAGTTATTCATGAATTTGAACGCAC
TCCACTACCAGTCAACTAGTTCCCTGCTGTCTATTGGCTCTGTGTGACTG
AATAATGGCCTAGATACTGACTATGTTATTACATCCCAAGCGACCTTCTA
TTCCAAAGAATTCCCGAGTTGACGTGTGTCCCAACTGTTTTCCCGGTCAC
CAGTTAGCCTTCTGTAGAAGTAGCCACAGGCTGATGAGGCAGCCCTGGCT
ATTCTCCAAGCAGAGGTTTCTTTTGATGGTACACTGGGCGGGGCACCGAT
AGATAGGATTTCATAGGATAGCTCCGCCCCGATGCGTTCTGTCACAGAGG
TGGAGGAAGAGAAACGTGGAAAATCGCGGCCACTCCTAGTCCTCTCTACC
GAAACCCCTGCTTTGAGAATATCCCTGGCAGTATCTTCACAGGTAATTGC
AAACCAATATATAATGATACGAGATATACACAGCCAACAGAAATAATAAA
TAAACTCCAAGATTGGACATGATATTCTTTGTGAAAAGTTACATGCTCAT
GCTGCAACTTCCTGTTTCAGCCACACCTATGGGCAATCTCCCCATTCTCG
AGGTGGACGGAGTCACTCTCAGCCAGAGCATGTCGATAGCTCGCTTCGTT
GCCAGGGAGACGGGTGAGTGTGTTCACGAGATTTGATTACTTCACAAAAC
AGATGTTGAAACATGTTTTTTTTATTGTTTTGAACTTATTCACATCCAAA
TGTTTGCTAATGCTACGATCTGATTTACCAATCCGGGCCCGGCCGGGCAG
CTTGTGGGAACAAAAAATATGATATAAAAGACAACAAAAGACACAAAACG
GAAAAGAATACACATAACCATATATCGTGGATTTTCTCAATATGCCCTTT
TTAGATTTTAGTTTACGCAAACAGCCCGGCCGGACGCAAGCAATTTGTGC
AGTAGCTGCATAATGAATCACATGAACAACTTGCTTACATCACGTCATTT
CTATCACTATTCGAACACATCACACGGGCCGGAAGTTCGATCGAATGTAA
ATTTTGCATGTTCGAACGCGTTGTTCCATCAATAGTCGAACACATCACAC
GGGCCGAAAGTTCGATCGAATATTGCATGTTCGAACGCGTTCCAATGTTG
ACTGAAATGACGCAAACAACTCAAGCTGTCCGCGGAAATATATTTCATCT
ACTTCTACAGGACTGGACGGTAAAAACAAACTGGAGCGGGCCCAGGCTGA
CGCCTTTGTGGACGAGTTGGAGGAACCGCTGGCGGCGAAACTCCCTGTTC
TGCTGGGATTCACCACTGATGAGAAAGAGAAGGTACCTTATATTTCTAGC
TTGTGACGTTACCAGCTATTGCGCAGCTTTTAGTGTTGCACCGTTATAGA
AAACGTTTTGCAATTACCAGGTAGATATTGTTGTCTGGTGCCCCGCGTTG
TAGACATGGTGTTGTTGCAATCTCTACCGTGAGTTTGAAAGCTTCAGTTG
GCAAACCTTGGCATAGACTGAATGGCTACATATATTTTGTTCTAGGAGGA
GAAAGCGAAGGAAGTGGATCAGCTGATCGAAGAGAAACTCGGCAAATGTG
AGAAACTGAGCGGCTCTAATGGATATCTAGTCGGGAACAGTGTAAGTATA
ATGTTTGAAAATACAAATATGATTACTTTTTCGAAATTCTTCAATGCAGT
ATACATAAATGTACATGTAACGTTATACTTGAAGCTAGTACCAGTAAGAA
AGATGTCGACTAAGCTATAAACGTTCAAGCACACGCAACAAGATTGTTAA
CATGTCTGTATTCTTTCCAGTTGCTCTGGTGCGACCTGGTGTTTTATAAC
ATAGCGTATTACATCGAGGTCTACAAGCCGGGAACTCTGCAGAACTACCC
CAAACTTGCCAAGGTGTACGCCACGGTCAAGGCCAACCCGCGCATCGCCA
AATGGATCGCCGAGGGCCAAGCGGGGCACTACCAGTACGGGGTCTGA

Coding sequence (CDS) from alignment at Sc0000006:4881145..4883391+

>transcript:BL95127_evm2 ID=transcript:BL95127_evm2|Name=transcript:BL95127_evm2|organism=Branchiostoma lanceolatum|type=CDS|length=3120bp|location=Sequence derived from alignment at Sc0000006:4881145..4883391+ (Branchiostoma lanceolatum)
ATGGCTCCAAAGTACAAGCTGACTTACTTTGACGTCCGATCTCGTGGCGA
ACCCACCAGGCTGATTTTTGCCGCCGCCGGAGTGGAGTACGAGGATGTCA
GGCTAACGTTTGAGGAGTGGCCGCCTATCAAACCGACCACACCTATGGGC
AATCTCCCCATTCTCGAGGTGGACGGAGTCACTCTCAGCCAGAGCATGTC
GATAGCTCGCTTCGTTGCCAGGGAGACGGGACTGGACGGTAAAAACAAAC
TGGAGCGGGCCCAGGCTGACGCCTTTGTGGACGAGTTGGAGGAACCGCTG
GCGGCGAAACTCCCTGTTCTGCTGGGATTCACCACTGATGAGAAAGAGAA
GGAGGAGAAAGCGAAGGAAGTGGATCAGCTGATCGAAGAGAAACTCGGCA
AATGTGAGAAACTGAGCGGCTCTAATGGATATCTAGTCGGGAACAGTTTG
CTCTGGTGCGACCTGGTGTTTTATAACATAGCGTATTACATCGAGGTCTA
CAAGCCGGGAACTCTGCAGAACTACCCCAAACTTGCCAAGGTGTACGCCA
CGGTCAAGGCCAACCCGCGCATCGCCAAATGGATCGCCGAGGGCCAAGCG
GGGCACTACCAGTACGGGGTCTGAATGGCTCCAAAGTACAAGCTGACTTA
CTTTGACGTCCGATCTCGTGGCGAACCCACCAGGCTGATTTTTGCCGCCG
CCGGAGTGGAGTACGAGGATGTCAGGCTAACGTTTGAGGAGTGGCCGCCT
ATCAAACCGACCACACCTATGGGCAATCTCCCCATTCTCGAGGTGGACGG
AGTCACTCTCAGCCAGAGCATGTCGATAGCTCGCTTCGTTGCCAGGGAGA
CGGGACTGGACGGTAAAAACAAACTGGAGCGGGCCCAGGCTGACGCCTTT
GTGGACGAGTTGGAGGAACCGCTGGCGGCGAAACTCCCTGTTCTGCTGGG
ATTCACCACTGATGAGAAAGAGAAGGAGGAGAAAGCGAAGGAAGTGGATC
AGCTGATCGAAGAGAAACTCGGCAAATGTGAGAAACTGAGCGGCTCTAAT
GGATATCTAGTCGGGAACAGTTTGCTCTGGTGCGACCTGGTGTTTTATAA
CATAGCGTATTACATCGAGGTCTACAAGCCGGGAACTCTGCAGAACTACC
CCAAACTTGCCAAGGTGTACGCCACGGTCAAGGCCAACCCGCGCATCGCC
AAATGGATCGCCGAGGGCCAAGCGGGGCACTACCAGTACGGGGTCTGAAT
GGCTCCAAAGTACAAGCTGACTTACTTTGACGTCCGATCTCGTGGCGAAC
CCACCAGGCTGATTTTTGCCGCCGCCGGAGTGGAGTACGAGGATGTCAGG
CTAACGTTTGAGGAGTGGCCGCCTATCAAACCGACCACACCTATGGGCAA
TCTCCCCATTCTCGAGGTGGACGGAGTCACTCTCAGCCAGAGCATGTCGA
TAGCTCGCTTCGTTGCCAGGGAGACGGGACTGGACGGTAAAAACAAACTG
GAGCGGGCCCAGGCTGACGCCTTTGTGGACGAGTTGGAGGAACCGCTGGC
GGCGAAACTCCCTGTTCTGCTGGGATTCACCACTGATGAGAAAGAGAAGG
AGGAGAAAGCGAAGGAAGTGGATCAGCTGATCGAAGAGAAACTCGGCAAA
TGTGAGAAACTGAGCGGCTCTAATGGATATCTAGTCGGGAACAGTTTGCT
CTGGTGCGACCTGGTGTTTTATAACATAGCGTATTACATCGAGGTCTACA
AGCCGGGAACTCTGCAGAACTACCCCAAACTTGCCAAGGTGTACGCCACG
GTCAAGGCCAACCCGCGCATCGCCAAATGGATCGCCGAGGGCCAAGCGGG
GCACTACCAGTACGGGGTCTGAATGGCTCCAAAGTACAAGCTGACTTACT
TTGACGTCCGATCTCGTGGCGAACCCACCAGGCTGATTTTTGCCGCCGCC
GGAGTGGAGTACGAGGATGTCAGGCTAACGTTTGAGGAGTGGCCGCCTAT
CAAACCGACCACACCTATGGGCAATCTCCCCATTCTCGAGGTGGACGGAG
TCACTCTCAGCCAGAGCATGTCGATAGCTCGCTTCGTTGCCAGGGAGACG
GGACTGGACGGTAAAAACAAACTGGAGCGGGCCCAGGCTGACGCCTTTGT
GGACGAGTTGGAGGAACCGCTGGCGGCGAAACTCCCTGTTCTGCTGGGAT
TCACCACTGATGAGAAAGAGAAGGAGGAGAAAGCGAAGGAAGTGGATCAG
CTGATCGAAGAGAAACTCGGCAAATGTGAGAAACTGAGCGGCTCTAATGG
ATATCTAGTCGGGAACAGTTTGCTCTGGTGCGACCTGGTGTTTTATAACA
TAGCGTATTACATCGAGGTCTACAAGCCGGGAACTCTGCAGAACTACCCC
AAACTTGCCAAGGTGTACGCCACGGTCAAGGCCAACCCGCGCATCGCCAA
ATGGATCGCCGAGGGCCAAGCGGGGCACTACCAGTACGGGGTCTGAATGG
CTCCAAAGTACAAGCTGACTTACTTTGACGTCCGATCTCGTGGCGAACCC
ACCAGGCTGATTTTTGCCGCCGCCGGAGTGGAGTACGAGGATGTCAGGCT
AACGTTTGAGGAGTGGCCGCCTATCAAACCGACCACACCTATGGGCAATC
TCCCCATTCTCGAGGTGGACGGAGTCACTCTCAGCCAGAGCATGTCGATA
GCTCGCTTCGTTGCCAGGGAGACGGGACTGGACGGTAAAAACAAACTGGA
GCGGGCCCAGGCTGACGCCTTTGTGGACGAGTTGGAGGAACCGCTGGCGG
CGAAACTCCCTGTTCTGCTGGGATTCACCACTGATGAGAAAGAGAAGGAG
GAGAAAGCGAAGGAAGTGGATCAGCTGATCGAAGAGAAACTCGGCAAATG
TGAGAAACTGAGCGGCTCTAATGGATATCTAGTCGGGAACAGTTTGCTCT
GGTGCGACCTGGTGTTTTATAACATAGCGTATTACATCGAGGTCTACAAG
CCGGGAACTCTGCAGAACTACCCCAAACTTGCCAAGGTGTACGCCACGGT
CAAGGCCAACCCGCGCATCGCCAAATGGATCGCCGAGGGCCAAGCGGGGC
ACTACCAGTACGGGGTCTGA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL95127gene:BL95127Branchiostoma lanceolatumgene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL95127_evm2transcript:BL95127_evm2-proteinBranchiostoma lanceolatumpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL95127_evm2-E1BL95127_evm2-E1-1564476830-70561Branchiostoma lanceolatumexon
BL95127_evm2-E2BL95127_evm2-E2-1564476830-70563Branchiostoma lanceolatumexon
BL95127_evm2-E3BL95127_evm2-E3-1564476830-70565Branchiostoma lanceolatumexon
BL95127_evm2-E4BL95127_evm2-E4-1564476830-70567Branchiostoma lanceolatumexon
BL95127_evm2-E5BL95127_evm2-E5-1564476830-70569Branchiostoma lanceolatumexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000006genomeSc0000006:4881145..4883391 +
Properties
Property NameValue
Transcript idBL95127_evm2
Biotypeprotein_coding