transcript:BL95126_evm3 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL95126_evm3
Unique Nametranscript:BL95126_evm3
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



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Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL95126_evm3

>transcript:BL95126_evm3-protein ID=transcript:BL95126_evm3-protein|Name=transcript:BL95126_evm3|organism=Branchiostoma lanceolatum|type=polypeptide|length=204bp
MAPKYKLTYFDVRSRGEPTRLIFAAAGVEYEDVRLSFEQWPPIKPTTPMG
GLPMLEVEGKTLSQSMSIARFVAKETGLDGKNNLERALADAFVDEIHEPL
AAKIPTLLAFTPDEKAKEELAKEVDQLIAEKLGKCERNSGSVGHLVGNSL
LWCDLVFYNIASYIEAYKPGTLQNYPKLAKVYATVKANPRIAKWLERPAG
QYGV
Run BLAST on NCBI

mRNA from alignment at Sc0000006:4885265..4887653+

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL95126_evm3 ID=transcript:BL95126_evm3|Name=transcript:BL95126_evm3|organism=Branchiostoma lanceolatum|type=mRNA|length=2389bp|location=Sequence derived from alignment at Sc0000006:4885265..4887653+ (Branchiostoma lanceolatum)
ATGGCTCCCAAGTACAAGCTGACTTACTTTGACGTCAGGTCTCGTGGCGA
ACCCACCAGGCTGATCTTTGCCGCCGCCGGAGTGGAGTACGAGGATGTCA
GGCTATCGTTCGAGCAGTGGCCGCCTATCAAACCGAGTAAGTCACGATAC
AAGACTGGTCTATGGGGGTACAGCGTTCGTCTTGCATTCGTGAATCAAGT
TCGGAGGGGGGGGGGCTAAATCAAAAACAGGTCATACCAAATCATCAAAA
ATGGTGCTTTATTCTCTGCGAATGAGTCATTCATAAATCTGAACGCACTT
CACTACCAGTCAACTAGTTCCCTGCTGTCTAGTGGCTCTGTGTGACTGAA
TAATGGCCTAGATACTGACTATATGTTATTACATCCAAAACTACCTTCTA
TCCCAAAGAATTACCGAGTTGACGTGTATGTGTCCCAACTGTTTTCCCGG
TCACCAGTTAGCCTTCTGTTGTTGCCAAGGCAAGCGGATAGTGATGGCGT
ACGGGATAGTGGGGCCGATAAAGTTCAGGCACCGGGGTATCGCGCCAACT
ACGGGGTCAGTCTAGCCGGCCAGGCTGTAGTGAGCCACTGGCTAGTTTGG
CAGCCCTGGTTATATGTAGGCAAACCGATACATACTGAGACGAGATATTC
CCACTGACGTAAGACATAAACTCCTAGAATAGACATGGTATTCTGTGTGA
TTCGTTCCACACTTCATATTTCAGCTACACCAATGGGTGGGCTTCCCATG
CTCGAGGTGGAGGGAAAAACTCTCAGCCAGAGCATGTCGATAGCTCGCTT
CGTTGCCAAGGAGACGGGTGAGTGTTTTCACGAGATTTGATCACTTCACC
AGCAGATGTTAAAACAGGATTATTGTCTTGAACTTATTCACATCAACAGG
TTTGCTAATGCTACGATCTCATTTGCGAATCCGGGGCCCGGCCTGTGGGA
ACAAAAAATATGATATTAAAGACAATAAAATACAGAAAACGTAAAAAATG
CTCATAACCATACATTGTCTATTATCTTGATATGCCTTTTTTAGATTTTA
GTTTACGCAAACAGCCCGGCCGGGCCCGGATTGGGGACTGCGGCATTACT
TGGCTACAGGCAGGCCAATCCGGATAAATGACTCAGCAAATTTTCGTACT
AAACTCTCACGGGTCCTCTTTATGATCACTGACCCCGTTATATCACGTGG
CCTTACTTGAGCGTGACGTAAGCAATTTGCGCATAGCTAACGTTACATAT
GAATCATATGAACAAAAACCTGCATACATCACGTCATTTCCGTCAACATT
TGAACACATCACACGAGCCGAAAGTTCGATCGAATGTAAATTTTGCATGT
TCGAACTCGTTCCAATGTTACGCGTCTATTCGTCAATAACAACGAACACA
TCACAAAGTTCGATCGAATATTGCATGTTCGAACGCGTTCCAATGTTGCC
TGAAATGACCCAAGCAACTCAATGGTAAGCTGTCCGCTGGAATATTTCAT
ATACCTCTACAGGACTGGACGGTAAAAACAATCTGGAGCGGGCTCTGGCC
GACGCCTTTGTGGACGAGATTCACGAACCGCTGGCGGCGAAAATCCCTAC
TCTGCTGGCATTCACCCCTGATGAGAAAGCGAAGGTACTTTATCTTCTAG
ATTGTGACGTTACCAGCTATTGCACAACTTTTAGTGTTGTAACGTTAAAA
AAAAAACGTTTTGTAATGTGCTGTGTACGTTACCAGGTAGGTATTGTTGT
CTGGTACCCCGCGTTGTAGACATGGCGTTGTTGCAATCCAAATAAAGTCA
GAGAGGGTGCTTTCTTGCGTTTTGTTCGTTTACTTCGTTGTTTGCATAAC
TCTACCGTGAGTTTGAAAACTTAAGTTGGCAAACCAGGGCATAGACTGAA
TGGTTACATAATATATTTCGTTCTAGGAGGAGTTAGCAAAGGAAGTGGAT
CAGCTGATCGCAGAGAAACTCGGCAAGTGTGAGAGAAATAGCGGCTCTGT
TGGACATCTAGTCGGGAACAGTGTAAGTACAATGTTTGAAACGGCAAACA
TGAAAGAACCCACATGATCACTTTTTCGAAATTCTAAAATGCGGTATACA
TAAATGTACATGTATAGTTGAAGCCACTACCAGTAAGAAAGATGTATAGA
AAGACTAAGCTACATGTATACATACATGTACAATTTCAAGCACACGCAAA
ACATTTCTGTATTCTTTCCAGTTGCTCTGGTGCGACCTGGTGTTTTATAA
CATAGCGTCTTACATCGAGGCCTACAAGCCGGGAACTCTGCAGAACTACC
CCAAACTGGCGAAGGTGTACGCCACGGTCAAGGCCAACCCGCGCATCGCC
AAATGGCTCGAGCGCCCGGCGGGACAGTACGGGGTCTGA

Coding sequence (CDS) from alignment at Sc0000006:4885265..4887653+

>transcript:BL95126_evm3 ID=transcript:BL95126_evm3|Name=transcript:BL95126_evm3|organism=Branchiostoma lanceolatum|type=CDS|length=3075bp|location=Sequence derived from alignment at Sc0000006:4885265..4887653+ (Branchiostoma lanceolatum)
ATGGCTCCCAAGTACAAGCTGACTTACTTTGACGTCAGGTCTCGTGGCGA
ACCCACCAGGCTGATCTTTGCCGCCGCCGGAGTGGAGTACGAGGATGTCA
GGCTATCGTTCGAGCAGTGGCCGCCTATCAAACCGACTACACCAATGGGT
GGGCTTCCCATGCTCGAGGTGGAGGGAAAAACTCTCAGCCAGAGCATGTC
GATAGCTCGCTTCGTTGCCAAGGAGACGGGACTGGACGGTAAAAACAATC
TGGAGCGGGCTCTGGCCGACGCCTTTGTGGACGAGATTCACGAACCGCTG
GCGGCGAAAATCCCTACTCTGCTGGCATTCACCCCTGATGAGAAAGCGAA
GGAGGAGTTAGCAAAGGAAGTGGATCAGCTGATCGCAGAGAAACTCGGCA
AGTGTGAGAGAAATAGCGGCTCTGTTGGACATCTAGTCGGGAACAGTTTG
CTCTGGTGCGACCTGGTGTTTTATAACATAGCGTCTTACATCGAGGCCTA
CAAGCCGGGAACTCTGCAGAACTACCCCAAACTGGCGAAGGTGTACGCCA
CGGTCAAGGCCAACCCGCGCATCGCCAAATGGCTCGAGCGCCCGGCGGGA
CAGTACGGGGTCTGAATGGCTCCCAAGTACAAGCTGACTTACTTTGACGT
CAGGTCTCGTGGCGAACCCACCAGGCTGATCTTTGCCGCCGCCGGAGTGG
AGTACGAGGATGTCAGGCTATCGTTCGAGCAGTGGCCGCCTATCAAACCG
ACTACACCAATGGGTGGGCTTCCCATGCTCGAGGTGGAGGGAAAAACTCT
CAGCCAGAGCATGTCGATAGCTCGCTTCGTTGCCAAGGAGACGGGACTGG
ACGGTAAAAACAATCTGGAGCGGGCTCTGGCCGACGCCTTTGTGGACGAG
ATTCACGAACCGCTGGCGGCGAAAATCCCTACTCTGCTGGCATTCACCCC
TGATGAGAAAGCGAAGGAGGAGTTAGCAAAGGAAGTGGATCAGCTGATCG
CAGAGAAACTCGGCAAGTGTGAGAGAAATAGCGGCTCTGTTGGACATCTA
GTCGGGAACAGTTTGCTCTGGTGCGACCTGGTGTTTTATAACATAGCGTC
TTACATCGAGGCCTACAAGCCGGGAACTCTGCAGAACTACCCCAAACTGG
CGAAGGTGTACGCCACGGTCAAGGCCAACCCGCGCATCGCCAAATGGCTC
GAGCGCCCGGCGGGACAGTACGGGGTCTGAATGGCTCCCAAGTACAAGCT
GACTTACTTTGACGTCAGGTCTCGTGGCGAACCCACCAGGCTGATCTTTG
CCGCCGCCGGAGTGGAGTACGAGGATGTCAGGCTATCGTTCGAGCAGTGG
CCGCCTATCAAACCGACTACACCAATGGGTGGGCTTCCCATGCTCGAGGT
GGAGGGAAAAACTCTCAGCCAGAGCATGTCGATAGCTCGCTTCGTTGCCA
AGGAGACGGGACTGGACGGTAAAAACAATCTGGAGCGGGCTCTGGCCGAC
GCCTTTGTGGACGAGATTCACGAACCGCTGGCGGCGAAAATCCCTACTCT
GCTGGCATTCACCCCTGATGAGAAAGCGAAGGAGGAGTTAGCAAAGGAAG
TGGATCAGCTGATCGCAGAGAAACTCGGCAAGTGTGAGAGAAATAGCGGC
TCTGTTGGACATCTAGTCGGGAACAGTTTGCTCTGGTGCGACCTGGTGTT
TTATAACATAGCGTCTTACATCGAGGCCTACAAGCCGGGAACTCTGCAGA
ACTACCCCAAACTGGCGAAGGTGTACGCCACGGTCAAGGCCAACCCGCGC
ATCGCCAAATGGCTCGAGCGCCCGGCGGGACAGTACGGGGTCTGAATGGC
TCCCAAGTACAAGCTGACTTACTTTGACGTCAGGTCTCGTGGCGAACCCA
CCAGGCTGATCTTTGCCGCCGCCGGAGTGGAGTACGAGGATGTCAGGCTA
TCGTTCGAGCAGTGGCCGCCTATCAAACCGACTACACCAATGGGTGGGCT
TCCCATGCTCGAGGTGGAGGGAAAAACTCTCAGCCAGAGCATGTCGATAG
CTCGCTTCGTTGCCAAGGAGACGGGACTGGACGGTAAAAACAATCTGGAG
CGGGCTCTGGCCGACGCCTTTGTGGACGAGATTCACGAACCGCTGGCGGC
GAAAATCCCTACTCTGCTGGCATTCACCCCTGATGAGAAAGCGAAGGAGG
AGTTAGCAAAGGAAGTGGATCAGCTGATCGCAGAGAAACTCGGCAAGTGT
GAGAGAAATAGCGGCTCTGTTGGACATCTAGTCGGGAACAGTTTGCTCTG
GTGCGACCTGGTGTTTTATAACATAGCGTCTTACATCGAGGCCTACAAGC
CGGGAACTCTGCAGAACTACCCCAAACTGGCGAAGGTGTACGCCACGGTC
AAGGCCAACCCGCGCATCGCCAAATGGCTCGAGCGCCCGGCGGGACAGTA
CGGGGTCTGAATGGCTCCCAAGTACAAGCTGACTTACTTTGACGTCAGGT
CTCGTGGCGAACCCACCAGGCTGATCTTTGCCGCCGCCGGAGTGGAGTAC
GAGGATGTCAGGCTATCGTTCGAGCAGTGGCCGCCTATCAAACCGACTAC
ACCAATGGGTGGGCTTCCCATGCTCGAGGTGGAGGGAAAAACTCTCAGCC
AGAGCATGTCGATAGCTCGCTTCGTTGCCAAGGAGACGGGACTGGACGGT
AAAAACAATCTGGAGCGGGCTCTGGCCGACGCCTTTGTGGACGAGATTCA
CGAACCGCTGGCGGCGAAAATCCCTACTCTGCTGGCATTCACCCCTGATG
AGAAAGCGAAGGAGGAGTTAGCAAAGGAAGTGGATCAGCTGATCGCAGAG
AAACTCGGCAAGTGTGAGAGAAATAGCGGCTCTGTTGGACATCTAGTCGG
GAACAGTTTGCTCTGGTGCGACCTGGTGTTTTATAACATAGCGTCTTACA
TCGAGGCCTACAAGCCGGGAACTCTGCAGAACTACCCCAAACTGGCGAAG
GTGTACGCCACGGTCAAGGCCAACCCGCGCATCGCCAAATGGCTCGAGCG
CCCGGCGGGACAGTACGGGGTCTGA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL95126gene:BL95126Branchiostoma lanceolatumgene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL95126_evm3transcript:BL95126_evm3-proteinBranchiostoma lanceolatumpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL95126_evm3-E1BL95126_evm3-E1-1564476830-70574Branchiostoma lanceolatumexon
BL95126_evm3-E2BL95126_evm3-E2-1564476830-70576Branchiostoma lanceolatumexon
BL95126_evm3-E3BL95126_evm3-E3-1564476830-70578Branchiostoma lanceolatumexon
BL95126_evm3-E4BL95126_evm3-E4-1564476830-70580Branchiostoma lanceolatumexon
BL95126_evm3-E5BL95126_evm3-E5-1564476830-70582Branchiostoma lanceolatumexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000006genomeSc0000006:4885265..4887653 +
Properties
Property NameValue
Transcript idBL95126_evm3
Biotypeprotein_coding