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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL90788_cuf2 >transcript:BL90788_cuf2-protein ID=transcript:BL90788_cuf2-protein|Name=transcript:BL90788_cuf2|organism=Branchiostoma lanceolatum|type=polypeptide|length=99bp
FQSKMLRRSCCALFRLRNSSCRVPHISRSSTYKSVYSLDRLYPDSDPTGF
LKVPEGAYSTRSNPDKFDGHIPVDKLKISYSKSSGAGGQHVNKAKESHQ Run BLAST on NCBI mRNA from alignment at Sc0000159:238457..246218+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL90788_cuf2 ID=transcript:BL90788_cuf2|Name=transcript:BL90788_cuf2|organism=Branchiostoma lanceolatum|type=mRNA|length=7762bp|location=Sequence derived from alignment at Sc0000159:238457..246218+ (Branchiostoma lanceolatum)
TCTTCCAGTCCAAAATGCTCCGTAGAAGTTGTTGTGCGCTATTCAGACTA
CGCAATAGTTCTTGTCGGGTTCCTCATATATCTAGAAGTTCCACGTACAA
GAGCGTATACAGTTTGGACAGACTATATCCGGACAGCGACCCCACGGGTT
TTCTGAAAGTTCCCGAGGTGAGCGCCCTCCCACTCCATTTCATAATTTTT
TCCAAGTGTACACTTTGTGACTTGCATACATATGACAGTTAACATACATA
CAGAAAATCATACCTGTTCAAAAAAGCTGCCAAAGGCTGTGAAACCTCAT
CCAAGGGGCATGCCTTTTTAAAGGTCACTCAGGGCTCGAAATTCATTTTT
GCAAATAGGTGCACTGGTGGGTTACTAGACTTTTCGCCCCCTGACCCGTT
CGTCCCCGGGTCCTTTCGTCCTCGTATGGACATTTCGTCCTCGGATGACG
CTTGTCTCACAATTACAAGTTGCTCGATTTTTATCATAAAATTTCATCAA
GCTTCTCAAAAAACCTTCACTGTTGCTTTCTCAAGTCTTTCACCTTGGAA
AACCAACACTCAGGTGACGTGCGAGCGGCGAGGAACTGTCATGATGTCGC
CGCCGCAGCGTCCGCCATCTTGGTTGTTTACGCATGTTGCAAATCGCTCG
TGGGCGCCTTTTACGGAGTTTGTATTAGTAAATAAGCTGACTGAAATGAA
ATTTTGACAAGAAAATTACCAAGACCGACTGGAAGTGTATCTCGGTCGAA
GTATGACACGTCTGGAAACTGAAACGGCAACTGGTAACTTCGCCGGCTTA
CACTTTAGCTGCCAAAAATACTTTTCAAGTAATATTTAATCAAGTATAGA
ATAATATGTGTTAAAAAAACTAGTCATTTAGGGTTTAAATGTTGTTAAAT
TGGAGGACGAAACATCCATGATGAGGACGAAAGGACCAGGGGACGAACAG
GTCAGGGGGCGAAAAGACCTGATACCCACTGGTGCACCCTACCAAGAGAA
TTAGGTGTACAGAAATAAAACTGGATGCACCACATAAAATCAAGTTGAAT
GTCAACAAAACATAATTACAGTTTGATGCTCTTATAATCATAATTAAAAA
CTATAGTGTGTAATTCTATAGCTTCCAATTTTCAGACAAGTAGTGCATCA
AAGAAAGTGCAACAAATTTTAATTTTAATTTTACAAATGGTTATACATTG
TATTGCTTTTTCTGATACTGTTTACTAATGTACTAAAGTACCTTTACCCT
ATAGCCTACAAAAATATCTAGGTGCACTAGTGCACCCACAGTCAAAAATT
AGGTGCACAGCTCTAATTTTGGGTGCACACAGGTGCACATTCACCCAGTA
TTTCGAGCCCTGTCACTTGAAGCGTCTGTGACAAATTATTAGTGCCTCAT
AAATACCTTATTGTCACAAATAATGAAATATCATTTCTGTGTTTGTCTTC
AGTTTCACAAGCTATCTTCGTGGTAAATTTTGTAATAGTGGAACCATACA
GATCAGAAATGTGAGGAAACTTCAGTGTTGAATGATGATTATGACCACGG
TGCTATGTTTGTATCCTCCCATCCTGTAGGGTGCCTATAGTACACGCAGT
AACCCTGACAAGTTTGATGGACACATCCCTGTTGGTAAGAATGCTTCCAT
TTATTTTTCAGAGATTCAACATTTTCGGAATGGTAAAACTGTCAGTATCA
TAATATCAGATTTTACTTCATTTGAATACTAGTAGTAGACATGTAAGCAT
GGTGTGAGATATATTATGTTTTAATATCATCTACAAAGTCCTGATATTTT
CATTTTCTTATTGCGAGAAGTAACAACTTGGCTTTTTTCTCTATGTGTAT
AACAATATATTTTGTTGTCTTATTTCTTCTAGACAAATTGAAAATTTCAT
ACAGCAAAAGTAGTGGAGCTGGGGGACAACATGTGAACAAAGGTAGCTTC
TTCATTGGAAACTTATCACGTTATGATATATTTCATGCACTTGTTTTTGT
TTTTCTTCGAAAATATTCCTAACAGCTTTTATTTATGGAATGTTCACAAA
AGGCATTGATATTTTTTTTTTACAGTGAACACGAAGGTTGACTTGAGATT
CCATGTGCAGACTGCTGATTGGCTCCCAGAAGATGTCAGGCAGAAGCTTA
CAGCAGTGGTACTGTACTCCCATCTCTTCACTTCTTTTAATCTGTCTGCA
TCTACATAGTACAGAACAAGGTCCTGCAAGGACAAGAATGTGAAAAAAAA
CAAAATCATAACCTCCTAGTCCTAGAAATCTATGTCTTATGAGAGTTCAA
AGATCTCACAACTTTGTGAAATTTTGAAAATTGAATGTGAAAGAAAAACA
ACATCATAACCCCCTAGAAATCTATTTCTTACAAGAGTTCAAAGATCTCA
CAACTTTATAAAACAACATCATAACCTCCTAGAAATCTATTTCTTACAAG
AGTTCAAAGATCTCACAACTTTGTGAAATTTTGAAAATTGAATGTGAAAG
AAAAACAACATCATAATCTACTAAAAATCAATTTCTTACCGTACAGGAGT
TCAAAGATCTCACACCTTTGTGAAATTTTGAAAATTTCTTGGATGTGTAG
TCTTATTGTATTATGCAAATAATGTTTAATATTACATGGCCATTGATCAC
TTCCTGTTACTCTACGGTGAATGTGTGGAAAATATATACATGTAACTGCG
AAAACAGACAGGCAGACCACAAACAATACCTCCCTGTTATTTAATAGCCT
CTACCATTGACCCCATGACCTTAACTGTCATTTCTGGTTAAAGACTAGTT
TTACCACCTCTGAACTGTACTTTCTGCCACTCCATCAAGTCTTGTAGATG
CTACATAGTCTTATCAGTACTCTCATCTCCCAAATAAACATACCCCCCGG
AATAAACATACCCCCTGGACAAATCTTCAAAATATAATAAACGTACCCCC
CGGAATAAACATACCCCCCGGAAATTGACCAAATTTACAGATAAACTGTG
TCCATGCTACTTCTGTCCGAGGGAAAGAAGATGATTAGCAGGTTCTCTTT
ATTCATTTATTGACTATTTATGCCTGTCTGAGGACCATACCAATTAAGTG
TATAACTATTGAACAGAATAACTGTACACATCTTGTTCAAATTATAATTT
TATTTGCCACTTCAAAAAGATATGCTGTAGTAGCAATGTTGAAAAAATTG
GGCATAGGTTCCCCGGGGGCCAACGGTGCTTCGAATTCAACAAGTTAAAA
TGTACATGATCATTGATACATGCATTTTCTGCTTGGAACTTGATGCAAGT
AAATTGTTGTATATACTGACATATAATCAAAACATGAAAAGTAGTCGCCA
AACTTCTCAGTTCACTTGGATGGGCAACACTTTGAAAGTCTACTCTTTTT
CTATACAAATGTATCAACATTTAGAAGATGAACAGAAAATAGCAATATCC
TGAATATATTGTCATCACAGGTATTACTTATATTTTGTAAAAGTCATGAT
AGAGAAAAGGAAGACTATGACAATCACATCATTTTTTTCACATGTATATG
ATGTAACTATTTGTCTTTCCCAACTTGCCATTTATCTTCTATGCCTTCCA
TATAGAAACATAGATTTGTAAACATTACATGCCACAAATCATTGTGTTGT
GTCAAGGACATTTAATATCATATAATATCAAGGACAATATTATATAATGT
TCTTGGCTTTTGTTGTTGCAATCCAAATAATTTAAAATCTAAAAATTACC
CTTGTATGTATCATTTTGAGAAACTAAATTGTCAACAAATTTGTGAGAAA
CCTCCTGAAGGCTTGTTACAATGTTGCCACAAACTACAGGGTTCTCATGT
TACATGAAAGGGTGAGCTATAGACAGTGGCGGCGCCACAGACAGAAAGGG
GCGGGGCTAACAGAACGTACACTCATGTTCTTAGAAACCTCCGGCATTCT
TTCTGTAGGGGGGTGATCTTTTTTCAAGCATTTTTCAGTGATAAAAATGG
TGACTAGATTGCAACAATTTTTTTATATAGACTAAGGTATTTAAATTATT
TTTGTAAAACTGCAAAATACTTTTCTGACAAAGGCAAAGGAGTTTTATTT
GTAGATCAAAAAGACTTGTTTCCCCTTCTTGAAAGTAAGATCTTCCAAAA
CAAAACATTCCCACGGACTGTCACTGCCGGGTGCGTTACTGTGGCGCTTT
TCGAAGGGCAAATTTTTCATGTTTGCGGTAGGATTGAAATGTTTTGATAT
ACTTTCAAAGTAATGATAAAGTTTTTGATGCTAAGACACGTTTTTTTGTG
GTGTTATTTTTGTATTTTCATTTTGGGAAAGACTGTATCTCACGTGAGTA
GAGTAATGTATTACATGCGTAACGTTAACGTTACTTGAAACACTTTGCGC
CGCTGACATATATTGGTTTCTGGTCAGCATGCTTTGGTTTACGATGTTAT
GAGACTGCTAAAGTTGTTCATATAAAAAGAATTGCATTTCAAAACGTCAG
TGTGGCGTCTTATTTTCGCCCAATAACAACGTTGACTTTGAAGTGTTATA
GAGATCGACCGATACGTTACGAGTTCCGCCAGGATTTCACAAAGGCCGGG
TCATAGCGGCAGGGAAATCAACGCCGCTTGGCCGGAAAATAATGAATTAT
GAGCAAAAATGCCGGGGAAATATTGGCAGGAAAACCCAAACTTTGAATTT
TAAGAGGATCCCAGGTTAGCGAAAGTCAAATTTTCAAAAAAATAATAAAC
GTACCGTCCAAAATAAGAACGTACTGGGTGGATTTTGAGGCTGAAAAAAA
TAAACGTACCGGTACGTTTATTTGGGAGATGAGAGTAGCAAATCAACAAT
AGTAGAGAAGGGTCATAGGTAGGGGTGGATACCGGTTCGCTAGACCTGAT
TCAGACCTTTATAACATCCAAGAACCGAGTCCAACAAAACTGAAAGCCAA
AACCTGAGTCCAAAAAACCTGAACAAAGTACAAATAATTTTTCTATTTTG
TTTGATAAAAAACTTTTTGAGTCTCCGCTCTGAAAAAAAAAGACATTTTG
AATAAGTGCAACATTCAAATATCAAACTCTGGTTTGTCTTGAAAGTCTTC
TCACCAAGAAACTTTTATAGTTGTGCGTGTCAGTATTAATTCTCTATGCT
TAATATTGTTCTGATAAAACAAAACATCAACTGGACAAGATCAGGTCCAG
GTTCAGGTCCGGATCTGAACCTAAATCTCTGGACCTAAACTTGGACTTGG
ACCTTATTAAGCCAAACCGGTATCCACCCCTAGTCATAGATGTTTTGTGT
TGTAGCAAAAGAGTCGCATCAATAAAGAAGGGGAGCTGATCATCAAATCC
GAGGTGAGCCGATTCCAGATGCGGAACTTGGCAGACGCACTGAAGAAGCT
GAGGGAAATGATCGAGGAAGTCAACAAGAAGCCTAAGGAACCCAGTAAGG
AGGACAGGAATCTGTGGAGACTCAGGTAGGGGTTAGATTTAGATTTCAGT
TTACTTCTTTTTTCCTTACAAGATGAGGCCTTTTTGTAAAGAAAAACAAA
AGCTTCTACTTGTTTTCTGTAGTTTCTTCTGTCTCCCAACAGTTTGCTAA
AATGCTACTCCTAAGTAACAAACCCCTAACTTGTGTTTTATTTACTATCG
TTAGTAGCATAGTTTACTTCAATTCAAATCAAATAGTACTTAAGAAACTA
TCAACAGAAGTGTTTCCTGGTTGTCATTCAATTCATATGTGTTATAAAGA
ATGTATGTAAGAAAGATTGCATGCTGGTTGAAGATTGATGATGTTTTTTG
ATGTTGTTGTTTCAGTGTAGAAAATGCCAACCGGGAGCGACTGAGGCAGA
AAAAAATGAGACAACAGACAAAACGTGACCGTGCAACCCTGTAGACTTGT
AGAAAGTACATGCACTCAACCACTCAACTTTACTTTTCTACAACATGAGT
GCACATATTTACCTTGCCATACCAAGGTATAAGTGTGTAGTCAAATCTAA
AGATTAAATGTATCTTAAAACTCACTGTTGGTTTTTCATCTTTAAGATGT
CCTGAACATTTGCCTTTAAGATAACAACTGAACGTACCACCCTACATGTA
ATCATAAGCCTACTTCTTTACTGGGGCTTCCAGTTTAACTTTATTACCTT
TGCCAGAAGGTTATGTTTGTGGTTAAGGCTGATGTGTGTCTATTCTTTTG
TGAACATGATTACTGGACAGGGTTCGAAATTCCTTTTTGGAAAAAGGTGC
ACTGGTGCACCCAACCAAAAAAATGAGGTGCACAGAAAGAATTTTGGGTG
CACCACATAAAATAAAGTTGAATGTCAGCAAAACATATTTAAATCTAAAG
CTCTTGAGAACTTCAATCTGTCATTCTAAAGCTAATTTCAAACAAGTAGT
ACATCAACTTAAGGACAACAAAAGGTTATAGTGCTTTTTCAGACACATAT
CAAGAATATTCTGTATACTAGTGGACAATAGTACCTTTACCCTATAGCAT
ACAGAAATATCTAGGTGCACTGGTGCACCCACAGGCAAGAATTAGGTGCT
CAGCTCCAATTTTGGGTGCACACAAGTGCACATGCACCCACTATTTCGAG
CCCTGCTGGAGAATGCCTAGGTGGAATGCGTTGATACTAGTATTTGGTAT
ATGGTTAGGTCTTGATGAGACTCTGAAATTATTAGACTTCGGGCCCCCTA
GCAGCTTGTTATACCGTAGTGGAACTCCTGGTTTTGGTATCTTTTGTTCT
GAAGATGGTATGGTAGATAGCACTTGGGCTTAGAGAGTTAGAAGTTTGGG
CCTCCTAGAAGCTTTTTCTGGAATTTCAGGGACATTTTTTTGTCATAAAC
TTTGTCAGGATCTGTCCCCACCGTGGGCGAAATCTGTCAAATATGTCTGC
TTCAAGATTTGCAAATCCTGGGGATTTTTTTTGGAAATCTTTAGATAAAT
AATATGAACAGTGTGAATAAATTTAGACTTTGGGTATTACAAGTACCAGT
ATGAATTAGCTATATTGAACCAATTGTTCCTTTAGATATGATTGTTTTTA
TTATATGGAAATTGACCAAGTTTGCTGTTTGGAATGCTCAGCATCTAAAG
AGGTTTGTTTCTTCGTGAAAGCTATGACATCGTATGATTTAAGACATATT
TTCTACTCCCCCAATTACTTCTTTCAACGCCTCACTGTAGGTACATACAG
AAAACAACTAGAAAACAAGTTACACACCAATGTGACGACGGGAACGTGAT
ATCTAGCTCAAACAAAACCATTTCCAATACTCCTGTCAAGAGGCCATCCT
CCTTCCCGGAGTAATAACAGTAAACATTACTGTGGAAAAATTGTTAACTT
TAATTTAGTTGATAAGTTGCAGTCATGCAAGTGAGTTTCGTGTTTAATCA
CACACACAAACAGTCTATTGCTCATTGTTTCGAATACCATTTACATGAAT
ATTGCAATAACTGTATACACAAAAAATCCAAAAAAACACCAAACATTGAG
TTACAGTTAGCTATGTAAATAACGTTATATAATATAAAAGTATTAACGGC
TAGTTTTCGTATCTCGACCAGCGAAGTACACGTTAGTTAAGATACATTGG
AGTAATACAGGACAGGATAACTGTGTGACTTGTGCGTAGCTTAATGGCGT
TTGTGACCGTGTGTATGAGACCTCCCACCACGGCTATGTCCTCCGTGCCT
ACCAGACCTCCCGCCATGACTGTGCCGCCCATGCCTATGAGACTTTCCCC
CATGCCTATGAG Coding sequence (CDS) from alignment at Sc0000159:238457..246218+ >transcript:BL90788_cuf2 ID=transcript:BL90788_cuf2|Name=transcript:BL90788_cuf2|organism=Branchiostoma lanceolatum|type=CDS|length=1200bp|location=Sequence derived from alignment at Sc0000159:238457..246218+ (Branchiostoma lanceolatum)
TTCCAGTCCAAAATGCTCCGTAGAAGTTGTTGTGCGCTATTCAGACTACG
CAATAGTTCTTGTCGGGTTCCTCATATATCTAGAAGTTCCACGTACAAGA
GCGTATACAGTTTGGACAGACTATATCCGGACAGCGACCCCACGGGTTTT
CTGAAAGTTCCCGAGGGTGCCTATAGTACACGCAGTAACCCTGACAAGTT
TGATGGACACATCCCTGTTGACAAATTGAAAATTTCATACAGCAAAAGTA
GTGGAGCTGGGGGACAACATGTGAACAAAGCAAAAGAGTCGCATCAATAA
TTCCAGTCCAAAATGCTCCGTAGAAGTTGTTGTGCGCTATTCAGACTACG
CAATAGTTCTTGTCGGGTTCCTCATATATCTAGAAGTTCCACGTACAAGA
GCGTATACAGTTTGGACAGACTATATCCGGACAGCGACCCCACGGGTTTT
CTGAAAGTTCCCGAGGGTGCCTATAGTACACGCAGTAACCCTGACAAGTT
TGATGGACACATCCCTGTTGACAAATTGAAAATTTCATACAGCAAAAGTA
GTGGAGCTGGGGGACAACATGTGAACAAAGCAAAAGAGTCGCATCAATAA
TTCCAGTCCAAAATGCTCCGTAGAAGTTGTTGTGCGCTATTCAGACTACG
CAATAGTTCTTGTCGGGTTCCTCATATATCTAGAAGTTCCACGTACAAGA
GCGTATACAGTTTGGACAGACTATATCCGGACAGCGACCCCACGGGTTTT
CTGAAAGTTCCCGAGGGTGCCTATAGTACACGCAGTAACCCTGACAAGTT
TGATGGACACATCCCTGTTGACAAATTGAAAATTTCATACAGCAAAAGTA
GTGGAGCTGGGGGACAACATGTGAACAAAGCAAAAGAGTCGCATCAATAA
TTCCAGTCCAAAATGCTCCGTAGAAGTTGTTGTGCGCTATTCAGACTACG
CAATAGTTCTTGTCGGGTTCCTCATATATCTAGAAGTTCCACGTACAAGA
GCGTATACAGTTTGGACAGACTATATCCGGACAGCGACCCCACGGGTTTT
CTGAAAGTTCCCGAGGGTGCCTATAGTACACGCAGTAACCCTGACAAGTT
TGATGGACACATCCCTGTTGACAAATTGAAAATTTCATACAGCAAAAGTA
GTGGAGCTGGGGGACAACATGTGAACAAAGCAAAAGAGTCGCATCAATAA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| Sc0000159 | genome | Sc0000159:238457..246218 + |
Properties
| Property Name | Value |
|---|
| Transcript id | BL90788_cuf2 |
| Biotype | protein_coding |
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