|
|
Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL90682_cuf1 >transcript:BL90682_cuf1-protein ID=transcript:BL90682_cuf1-protein|Name=transcript:BL90682_cuf1|organism=Branchiostoma lanceolatum|type=polypeptide|length=296bp
MTAAVMAHLKLEAVSETYQGEESTDDISWSFLHTYVFKPTTQQKPDDDLL
DFSTSLLYHLMLYIDLRQSIRNENGPAIISHWRHWLATFLGTGRSQYSTE
AANLIANIEADWPEAVSVLATHNRTINTHGREGHGKPIDMLVEHYNKILK
AALRGSGGHLTYQHAREVSLAVPLFDEARKFVTKLFDTRQTVRHTNPSAE
KDIRLMIDAVVGAKVYNATPGRRLSEAFEDPVQKGMNKITYDGWLDAFLQ
KGNGQEPEGLTDFAVSGEEADSSNGDNDDDDDSSDDEPDTDILMDE Run BLAST on NCBI mRNA from alignment at Sc0000042:1291215..1297051+ Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL90682_cuf1 ID=transcript:BL90682_cuf1|Name=transcript:BL90682_cuf1|organism=Branchiostoma lanceolatum|type=mRNA|length=5837bp|location=Sequence derived from alignment at Sc0000042:1291215..1297051+ (Branchiostoma lanceolatum)
GTAGTTGGCGACCAGGCGACGTGTAAGAATATCAGGGGGGCAAGGAGGCT
GCGACAGGATGATGTGAGCAGGAAGGAGAAGCTGACCTGGGTCAAAGAAA
ACCCAGGTATGAACAATTGCTCTTTCCCGTTTGTCATTTTGTAGTATCCC
CGGTGGGTGTACTAGTTCTGTTCTGTTCTTTTGATTTGATTTTTGAGTTT
GACTGAGCTATGTGCATGTGATTATTTCTCATTTATTTCTCCTTTACTCA
AAGTGATTTTTTACATATATTGTACTTCGTGTATCTCTTATTGTGCTACT
GTATTCTTAGGAGACTTTCACTTCCTGTGGGAAGTGGCGAAGTGTATCCT
GCTGGCCTTCTGGTCCTCCATGGATGTCGGCTCCATTGGTTTCCTAAGAG
ATTTGGTTGACAGGAAATCAATCGACAAAAAAGGTATCCCACTTTAATGA
CAAAGTTTCACTGTTTATTTTTCCTAATGTTCACAGGCATGATGCTTGTA
AGTTAAGTTGATTATTATATTTTTTATAACATGCTATTGTGAACAATAGT
CACTAGACTGGAAATCACTATAGCGATCCAGTTCAGTGACCAATCAGTGT
GTTATATATTTACCAGTGCATCAAACAATTTATAATTGCTATAGTGTCCA
CGTTGAAGAAAAGAACTGCTGGTTAAAGGTTACATAAATAAAATAGTGCA
AGGGGCAAATGTTTGTGCAAAGTCTTGAATGAAATTTTTTTTACTCCTCT
TTTTCACGTCCCTACAGGAAGCAACTTCAATGCGTTAGATGACTTTCTGC
ACCACGCATACGAAGTTCACATGACAGCAGCAGTAATGGCTCATCTAAAG
CTGGAAGCAGTGTCTGAGACATACCAGGGCGAAGAGTCAACAGATGACAT
CTCCTGGTCATTCCTACATACATACGTGTTCAAGCCAACAACCCAACAGA
AGCCTGACGATGATCTACTAGACTTCTCCACATCCCTCCTCTACCACCTC
ATGCTATACATTGACCTCAGGCAGTCAATCAGGTAAGATAGATAGGTTGA
GATTTATTTTGAATACAACAGAATATTACATACACTGCTCTGTATATTAC
TTTTTGTGAATGCATGTTGAATACAAATGATGGACCTTGACATGCAGGCT
GGCTGTTTGTACCTCCTTTTGATGTTTAGTGCAATGTCTATGTCACATTT
ACAGGAATGAAAACGGCCCAGCGATCATCAGTCACTGGCGTCACTGGCTG
GCCACATTTCTGGGGACTGGGAGGTCGCAGTATAGCACAGAGGCAGCCAA
CCTCATCGCCAATATTGAAGCTGACTGGCCTGAGGCGGTGTCTGTGCTGG
CCACCCACAACAGAACCATCAACACACATGGCAGGGAGGGGCACGGGAAG
CCAATCGACATGTTGGTCGAGCACTACAACAAGTATGTTCATCATAATTC
CCAATTTGTAATGTATACATATATTACTGGTAGCAAGCAATATATTGAGG
CTCAATATATTGCTTGTACATGATTGAGCTAAATTCACTTTCCCTGGGCT
TGATTTCACAGTAGGAGTGGAGAAGAACTTGTATTGTTTTAAGTTTGCTG
TTGAAACAATGTGTATTACAGTGAAAATACAATTCATGGAACTAAACAAA
GATTATAACAGTGTATATACATTGCTACATGGAAAAAGCATGTTTGATTG
TATCACCCCTTCACACAAGGTATATTATACAATAATGCACAAGAAACATA
ACACCCCATATACATACTACATTCATTGTAAACTTTTAAGTACACTGCTG
CAATAGAATTCTAATCATAGTCCTAACTTGTCCCATTGCAGGATTCTGAA
GGCAGCGCTGAGGGGTTCGGGTGGTCACCTCACGTACCAACATGCAAGAG
AGGTGTCTCTGGCAGTCCCACTGTTTGACGAGGCCAGGAAGTTTGTCACC
AAGCTGTTTGACACGAGACAGACCGTGAGGCACACCAATCCGTCAGCAGA
GAAAGACATCAGACTGATGATCGACGCTGTCGTGGGGGCCAAGGTATACA
ACGCCACTCCGGGAAGACGCCTCTCAGAAGCATTTGAGGACCCAGTCCAG
AAAGGCATGAACAAGATAACATACGATGGATGGCTGGACGCTTTCCTTCA
AAAGGGAAATGGACAGGAGCCGGAAGGACTGACCGACTTTGCTGTCAGCG
GGGAAGAAGCAGACAGCTCCAATGGGGACAATGATGACGACGACGATAGC
AGTGACGACGAGCCCGATACAGACATACTCATGGATGAGTAAGGTAAATA
TTTGCCATGTAAGGTACTTTTGGACTCTTGAGTGTGAAGATTACTTGTAT
CGGATACATTCTTAAAGAAAGGACACTCGAAAACCAGTACACCATGTAAT
TTAGAAGGCAGTGTTTGTGATGTCTCGAAGACCTCTGGAGTTGGGATTTG
TTCTTTTTCTTCTCTTCCTTGTTACTTTCTTCTCTGGAATGAGATTGTCA
ATTTCTGCTAGGATCTTCAACATCAACTCCCTGTTATCTTTAGGTACGCC
TTTCTTTTTTTCCAAGTCCTCTAAAGTATGTATTTTAAGGCAGTCCTCTA
CAATGTCCTTAATCGTTTTATCTGACATAATAGCACAGGGTCCAATAAAG
ATGAACTGTGGAGACTGTTCATATTGCTCATCTCTGAGATGATAGAGTCT
TTTCCTCAGTTCGTCCTCATTTTGCGTATCTTCTCTCCTCTTTGCCCGTG
TGTCCCTGCGCTTGCTGCCCCGCTTTTGCTGTTCTTTGGGTGCTGTGAAA
ATGCATGACCTTTCTTCTTTATCACATATGCTACAACATCGTGTGCGTTC
CTCCTCACTGTCTTCTCCCATGTGCTCATCCAATCCATCTTCGCCTTCTT
CCTCCTCACTTTCCTCTATCATGTTCTCCTCCAGTCCATCTGCGCCATCT
TCCTCCTCACCCATGTGCTCATCTGCGCCTTCTTCCTCCTGACTCTCACC
CATGTGCTCATCCAATCCATCTGCGCCTTCTTCCTCCTCATCTTCCTCCT
CACCTTCTGCTCCCATGTGCTCCTCCAATGCCTCTTCTTCTCCATCTTCT
TCTCCCAACTGTTTCAGTACTTCTCGCCGGATGCAGCCTTTTGTGTTTAC
TACTGCCTTTATCCCCTTGTCAATGTCTTTTCCCCCTCTTCCGTAGAAGA
AGACAGCATGTGCTTCATCTCCCCGTCTCCCTGCCCTTCCAATTTCCTGT
ATGGTACAAGGATACAGTGTGAATAGTATCTTTAACACTCACAACTTCCA
TCATTGACCTTATAATATAAATGATAAGGACTGAGCTGTGTTTTTGTAAC
GATAACCAACGATAACCAGAAACAGACTAAGCCTTATTTGTTGCATCGTC
ACAGATGAAAATTCTAGTTCTTGTTTTATAGTCAGAGCTGAAGCCCTGTC
CCTAATTCGAAATTGACTTGTACTATAACTAATAAAGTTGAACTTTGACA
TGCATCATTGTAATGTTCAACAGAAATTCCTATTTCATCAATATGAAACA
GCTTGGTTGTAAGTTGTTTTTTTATCTAGTTAACTTTAGTTTCATCAATT
TACCTGGTAAAGCTGGCCTACAGTTGATGGCATACCATATACAACCACAC
CCTTGATATCTGGTATGTCGATACCCTGCAAAAGAATTGTGGGAACGTAT
GAGAAATATATGTTCAGATATATATTATATGTATTCACTGTTACGGCCTA
GCAAGGATACATGTCAATAAGAAAAGGCCTTTGTTGGAAGGTTAGCTGGG
TACATGCAGATATGTTTCATTCCCTCATGACTCACTTACAAATACCACTT
AAGCACAGCATCAGTTCTGCATACTGGGACATTTATTCAAAACTGGACTG
TTTTACTATTGTGCAATCTTTAAAAGATGATTTGTATTGGCATTTTTCTA
TTCAACTTGCCATGTCCTGCTCCAAAACACTTGTTGGGTAAGTCAATTGG
GCAATGGAAAGGCAGTATCAAATGGGCAAACCAGTATCCACCTGTGGTGG
CCTTTTGGATACTCGTTAGCCCACTGATGAATCGGAGATTAGGGTCAACA
TACCCTTATGACACGTAAGTTAAGTATACACATACCATGCCAAAAGCAAT
GGACGCAATGACAACCCTTATGGTGCCATCACGGAAGCCTTCCAGCACCA
AGGCTTTGGCCCTGGACGACATGTCGGCATGAAATGTACGAACTGTCCCT
TTTGTCTCTGGACAGCACACAGGTCTGAACAGTTCCCAGACATCCATGGC
CTTCTGTTTCCGAGGCAGGTAGACAAGGTGCTTGTCTATGTCTGATGGGC
TCTTTGCTTTTTGGATGACATCAAGCAGGGGTCCAAGGTCAGCCTAAAAA
AATAGAAAAGTAACAGAACTACATGTACTAAACAGTTTTGCTTAATGCTT
ATCACCTACTTACCAAAATGCAGCCTAGCTTACCTCTGAAGGCATTCTAA
GTCATAACATTATTCTTTGATATAATAAGAATTCGATTCTCTGTTTATTG
CTAATATAATTGGTTATGGGATTGTAATTCTACCTTCATGCTTGTCACTT
TCTTGCAGACCAGGAAGATGTTTCTTCTGTCCAGGCTGCCCTTCACCACT
TTCGGGTTCTTCAGCTTCAGCTTGTCGGTAGCGACTGCCTGTACCTCCTT
CGTCGCTGTGGCAGTCAGAGCCATGAAGGGGACACCTGGCAGCAAAGCCC
TCACATCTCCAATGTCGTAGAACGAAGTTCTGAAGTGTTCTCCCCTGTTT
TTGATGATTTTAATTGTTGTCATTGCAAATATGTGGAAAAAACAGACTAG
CACTTATAAATATTTGGAAAGACAAGTTTGCATATGTACCTGAGTGATGA
AGATGTTGTTTTTTGAAGTCACATGCATGTAGATTGTTTGTTAAAGAGAA
TGATCTTTTTGGATAGGTGTACTGAGTAAGGTATGGTGCTATGCTGGGTA
AGATAAGGTAAGACAAGTATTCTAGAACAGTAGAAGTGGAGAAAATACAT
GCCAAAAAGGTCACTTATGCTGACTGGGTATATATTATGATGGTAAAGAT
TTATTGATCTGTACATATTGGATACTGCTATCACAAGGTTTTCATACAAA
TCACTTTCAATAAATTTACATTTCCATAAAGTGACATCAATAACAGTTTA
TTATTATGTCAGTTGCACTTTTAGAATAAGTTTGTAAATATTTATTTACC
ACTCTGGTATGCAGTGGGCCTCATCAACTGCAACTAACGCAATTGGTAGA
GGCGGTGCCAGGAGCAGTTCTCTTCCATCCCGTGATGTGAGCTCCTCTGG
AGACATGAAGACTGTAAGACAGAACAGAGAAACAGCTTATCAGCTTCAGC
CATGCTTATTGCTTATCAACTGTTTACTCATCCTCAGTGTGGATGCCTTG
TACTGTCTGATATTGAGCTCAGATCATAGAGAATAATTGGCTAATTGCCA
TGACTTACCCAGACGCACATCCTTGTCAGGTGTCCGGACAAAGGTCGCTA
CATCTCCTCCTGACCGAAGATGTAGCCCCTTGTAGCCTGTTGCTTCCTGG
AAACGGTGAATCTGTGGCACAATATCCTAGGTATTAGTAATATGAATTAT
AGCCAAGTTGTAATGTTTCAAAATGCTCATGTAGTTGTGGCATGAAACAG
CTGAACTCTCTGTACAGCATGCCTTTCTGAGAAAGATGAGGAGGGGAAAA
TACATATAGCTGAATTGAAATGTAAAGAAGAAGAATTAGATAGGAAAAAG
AGATGCTGTCCAAACAAGCTTATAAGGTAAGTGTACC Coding sequence (CDS) from alignment at Sc0000042:1291215..1297051+ >transcript:BL90682_cuf1 ID=transcript:BL90682_cuf1|Name=transcript:BL90682_cuf1|organism=Branchiostoma lanceolatum|type=CDS|length=2673bp|location=Sequence derived from alignment at Sc0000042:1291215..1297051+ (Branchiostoma lanceolatum)
ATGACAGCAGCAGTAATGGCTCATCTAAAGCTGGAAGCAGTGTCTGAGAC
ATACCAGGGCGAAGAGTCAACAGATGACATCTCCTGGTCATTCCTACATA
CATACGTGTTCAAGCCAACAACCCAACAGAAGCCTGACGATGATCTACTA
GACTTCTCCACATCCCTCCTCTACCACCTCATGCTATACATTGACCTCAG
GCAGTCAATCAGGAATGAAAACGGCCCAGCGATCATCAGTCACTGGCGTC
ACTGGCTGGCCACATTTCTGGGGACTGGGAGGTCGCAGTATAGCACAGAG
GCAGCCAACCTCATCGCCAATATTGAAGCTGACTGGCCTGAGGCGGTGTC
TGTGCTGGCCACCCACAACAGAACCATCAACACACATGGCAGGGAGGGGC
ACGGGAAGCCAATCGACATGTTGGTCGAGCACTACAACAAGATTCTGAAG
GCAGCGCTGAGGGGTTCGGGTGGTCACCTCACGTACCAACATGCAAGAGA
GGTGTCTCTGGCAGTCCCACTGTTTGACGAGGCCAGGAAGTTTGTCACCA
AGCTGTTTGACACGAGACAGACCGTGAGGCACACCAATCCGTCAGCAGAG
AAAGACATCAGACTGATGATCGACGCTGTCGTGGGGGCCAAGGTATACAA
CGCCACTCCGGGAAGACGCCTCTCAGAAGCATTTGAGGACCCAGTCCAGA
AAGGCATGAACAAGATAACATACGATGGATGGCTGGACGCTTTCCTTCAA
AAGGGAAATGGACAGGAGCCGGAAGGACTGACCGACTTTGCTGTCAGCGG
GGAAGAAGCAGACAGCTCCAATGGGGACAATGATGACGACGACGATAGCA
GTGACGACGAGCCCGATACAGACATACTCATGGATGAGTAAATGACAGCA
GCAGTAATGGCTCATCTAAAGCTGGAAGCAGTGTCTGAGACATACCAGGG
CGAAGAGTCAACAGATGACATCTCCTGGTCATTCCTACATACATACGTGT
TCAAGCCAACAACCCAACAGAAGCCTGACGATGATCTACTAGACTTCTCC
ACATCCCTCCTCTACCACCTCATGCTATACATTGACCTCAGGCAGTCAAT
CAGGAATGAAAACGGCCCAGCGATCATCAGTCACTGGCGTCACTGGCTGG
CCACATTTCTGGGGACTGGGAGGTCGCAGTATAGCACAGAGGCAGCCAAC
CTCATCGCCAATATTGAAGCTGACTGGCCTGAGGCGGTGTCTGTGCTGGC
CACCCACAACAGAACCATCAACACACATGGCAGGGAGGGGCACGGGAAGC
CAATCGACATGTTGGTCGAGCACTACAACAAGATTCTGAAGGCAGCGCTG
AGGGGTTCGGGTGGTCACCTCACGTACCAACATGCAAGAGAGGTGTCTCT
GGCAGTCCCACTGTTTGACGAGGCCAGGAAGTTTGTCACCAAGCTGTTTG
ACACGAGACAGACCGTGAGGCACACCAATCCGTCAGCAGAGAAAGACATC
AGACTGATGATCGACGCTGTCGTGGGGGCCAAGGTATACAACGCCACTCC
GGGAAGACGCCTCTCAGAAGCATTTGAGGACCCAGTCCAGAAAGGCATGA
ACAAGATAACATACGATGGATGGCTGGACGCTTTCCTTCAAAAGGGAAAT
GGACAGGAGCCGGAAGGACTGACCGACTTTGCTGTCAGCGGGGAAGAAGC
AGACAGCTCCAATGGGGACAATGATGACGACGACGATAGCAGTGACGACG
AGCCCGATACAGACATACTCATGGATGAGTAAATGACAGCAGCAGTAATG
GCTCATCTAAAGCTGGAAGCAGTGTCTGAGACATACCAGGGCGAAGAGTC
AACAGATGACATCTCCTGGTCATTCCTACATACATACGTGTTCAAGCCAA
CAACCCAACAGAAGCCTGACGATGATCTACTAGACTTCTCCACATCCCTC
CTCTACCACCTCATGCTATACATTGACCTCAGGCAGTCAATCAGGAATGA
AAACGGCCCAGCGATCATCAGTCACTGGCGTCACTGGCTGGCCACATTTC
TGGGGACTGGGAGGTCGCAGTATAGCACAGAGGCAGCCAACCTCATCGCC
AATATTGAAGCTGACTGGCCTGAGGCGGTGTCTGTGCTGGCCACCCACAA
CAGAACCATCAACACACATGGCAGGGAGGGGCACGGGAAGCCAATCGACA
TGTTGGTCGAGCACTACAACAAGATTCTGAAGGCAGCGCTGAGGGGTTCG
GGTGGTCACCTCACGTACCAACATGCAAGAGAGGTGTCTCTGGCAGTCCC
ACTGTTTGACGAGGCCAGGAAGTTTGTCACCAAGCTGTTTGACACGAGAC
AGACCGTGAGGCACACCAATCCGTCAGCAGAGAAAGACATCAGACTGATG
ATCGACGCTGTCGTGGGGGCCAAGGTATACAACGCCACTCCGGGAAGACG
CCTCTCAGAAGCATTTGAGGACCCAGTCCAGAAAGGCATGAACAAGATAA
CATACGATGGATGGCTGGACGCTTTCCTTCAAAAGGGAAATGGACAGGAG
CCGGAAGGACTGACCGACTTTGCTGTCAGCGGGGAAGAAGCAGACAGCTC
CAATGGGGACAATGATGACGACGACGATAGCAGTGACGACGAGCCCGATA
CAGACATACTCATGGATGAGTAA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000042 | genome | Sc0000042:1291215..1297051 + |
Properties
| Property Name | Value |
|---|
| Transcript id | BL90682_cuf1 |
| Biotype | protein_coding |
|
