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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL90623_cuf0 >transcript:BL90623_cuf0-protein ID=transcript:BL90623_cuf0-protein|Name=transcript:BL90623_cuf0|organism=Branchiostoma lanceolatum|type=polypeptide|length=101bp
MNAWLSVKRNQSSFPRTMMLRCRQIGHPVVFKCACTTNKKCCHSEPYSDL
SLDTEYEPSSNKWGGPVYFLWNRSSSPVKHNIFGNVQKLAPFCMQLQKAS
G Run BLAST on NCBI mRNA from alignment at Sc0000038:1256560..1259738+ Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL90623_cuf0 ID=transcript:BL90623_cuf0|Name=transcript:BL90623_cuf0|organism=Branchiostoma lanceolatum|type=mRNA|length=3179bp|location=Sequence derived from alignment at Sc0000038:1256560..1259738+ (Branchiostoma lanceolatum)
TTTTGATTTAATATACACATTTACGCCGAATAAAGTCCGTTCTCTTGATA
TCTGCACATTTTGAACGTCGCGCCACTGAACGGCCAATCACTTTTGCTCA
CCGGCCTGAACCCGGAAGTGACGTCACCTACAGAGAATGCGCCGGAACCT
CAAGCAATGGCGGGTGTTTCACATGTTGTCAGCTGTTTTCCGTATCTTTC
TGTCGACATGTCGTCAAAGTGTGTTGTCAATGACGGTGTAAGTCTCCATA
CGTCCTCTAAGGATGCTGAAACAGTAGGTCAGGCAAGTTTGCCGCACGAG
AGACGGTTTTTCAACGGCCGAGCGATCGCTTCTGTGCTCGGCACATGATA
TTTGAAGCCGAAGTGTTTTGATGGCGTCCAGACTCTGAAGGAGCGACTTG
GGCCTGGCACTTGGCAGTCGGAAAATGCGTCTGTTACCTACGGCAGTTCC
AGTCATCTTTCCTCGCGGGCAGACCGGGACAAAGTCAGAGACGCCGAGAG
TCGTGGGCGGTAGAAAAATTAAAAGAGGGCAAGATTGGAGGTAGGTAAAA
TACTATAGGTAACGTTAAATTTATGCACACGCCGCGGCATGCACCGTGGC
AATAATATTTGTCAAATTTCAAATAGTTTCGGGAGACTAGAAACGCGTAC
AACAACAATAGCGTACTTTGTATGTCAGAGTACCCAATGCAACGGCAAAG
CCGGTTGTTATTCACCCGCTGCGGTGCCTATTTTCCCCATAGACACTGGG
TAGTGGGGGAGGGGGGCGGTTTGTTTACACTAACATTTAGCTCATGTCAA
CTCTTCCTAAGACTGAACACGCACACTGATCTCAACACAATGTTTTGGTA
GTGGTTAAGGAGGGTAAACCCTACCCAGGAAAGGTCCCTTGGAGCCATGA
ACTATCGTTTGGGCAGTCGTTTTTATCGGATTAGGGATTTGTGTGCGTCT
GCTAGGAGGTAGTTTTCACCCAGCCGCACAACTTCAAAGTTCTAGATCTA
CTGACTAAAACTTGAACTGTGATGAGTAGTGGGTGAGGTGCATAGTTGTG
AACAATTTTGTGCCGTGGTATGTTTTCTTTTACACAAATTATGATAATAA
AAACGCATTTGCATGTGGATATCCATGACATAAGTTGATACAAGGACATT
GTACTATATAATGCCCTTGGTTGATATATTAAGAGTTACACACTAAACTT
GCCAAAGGGAATTAATCACTCATACCAGTAACCAAGGGGTACAATCAGTT
AGCTCATACTGTTGGTTTTACCTGTAATGTATTTTTGTGATGCATATAAC
TATTGTGCAATATTTTTCTAAAGGCCTTTATGTATATTTCAGATAATTGA
TGAATGCATGGCTATCAGTCAAGAGGAACCAGAGCAGCTTCCCCCGGACA
ATGATGCTGTAAGTTTTTGTCCAAAAAGCACAAGTTTGTTAGTTTTCCAG
CGGCTCAACATGATGCTGATTTGTAATTTGTAAGGCCTAAGAAAAAATGT
TCAAGCACAAGTATGTTAATAAACTGAACAAAAAAAAATACAATGTTTAC
AACACATTCCTACTTCAACTGATAACAGGGTTTGAAATACAGCAAGAAAT
ACTGCAAGAAAATATGTAAGAATTGTTGGCCTGTTGTACATTTCATCACT
CAGATGTTCGATCAAAATCTTTTTACCTACCTTGTTAGTAGTCGACTAAA
AAAAGCCTAGAGTCAGCAGGTTTGTCTAGGATTGGTCAGGTAACTGGAAC
AGAACATTTTTGCCTAAGCATGGCAGGGTAGGGCAGCTTTCAGGTGGGAC
AACACAATTCTATAAGCTGGTGCCAATATTTTGTCAATCTCTCCGTTAAT
GTTATATAAAACCTCCTTGATCTCCCTTACAATTTTTGAAAATAATTGTG
GAGCCTGCTTGATACACTGTTGTGATTGGTAATGTTTCAGTGTCCTACAA
ATGCAGTCCAAGAGAAAAGATTAATATTAAAGATCAAAATATTAGATTTA
TACAACTCATTTGTATTTAGTGCTGCATACCTAAACCTGTGTTCAGATTC
AGAGGTTCAGTTTCTGACTTATGGTGGTTTAAGACAGTTTAGAACAAAAA
GGAGAATATAACTATAAGCGAGATTTTTTTTCCATGTCCAGACTTGTTTT
CAGACATTTAATAGTTTCACGTTAGGCCTAGTCCAGTTCAGATTAGGTAT
GCAGGACTATTTGCATTCATCTAACATTTGAATCTACATGTATTTGTTTT
TGTGTATGTATTCAGGAGATGCCGCCAGATAGGACATCCAGTGGTGTTCA
AGTGTGCTTGCACCACCAACAAGAAATGTTGCCATTCAGAACCTTATTCT
GATTTGTCTTTGGACACAGAGTATGAGCCATCAAGCAACAAATGGGGAGG
ACCCGTGTACTTCCTTTGGAACAGGAGCAGTTCACCAGTCAAACACAACA
TTTTTGGCAATGTACAGAAGTTAGCACCCTTTTGCATGCAACTTCAAAAA
GCCTCAGGATGACCCATTTTTAGTTCTAATATTCAAAAGCTCCACACTGC
ATCTCTTATTAAATTTTTCTAGAAAAAAATGTTTTATAAGAGCTAGGATC
ATTTCTATAGTGTACAGAAGGGAAGGTCTCCTTGATCCTGATCATTGCAC
AGACAGGAAGGACCACTCAAACCTCTTCTTGTTGGGATAGGCAATGCACC
TGTACAAAATGTATGTCCTAAATGAAACAGACCCACTGCACGCTTTTGAG
TATTTTTCGTGTTTTTTAAAACAAAATTCCAATTGAAAATATTTGAAGTT
ATGTTATAAAAACTTCCAATTGTAATAGAGCATATCCAGGGCCCCACTGC
AAAGCAGTGTAGTGCACTGAGTTGGGCCACCCTGGCTAAATAAAACAGAA
AAAACAAACAAACAAGCATGCAGTTAAATTATTTGTTGTGTAACTTGTAG
CTGTTAGACCTTGTGTATATTGACCATCTACCAATGTTAGCACTGAACTG
CTTGAAATTTTAAAAAAAAATTACATGTACATGTCTGTCTGCTGGATGGT
GGATTTCGATAATTGTTTTGTTATTGAACAAGGGCATCATTATCATGCCC
TACATAGAATCTGTACTTACCTGTATCATCTGTGAAGTAATCTACACACA
TTTTGTATCAACATTTGTATAATAACTTT Coding sequence (CDS) from alignment at Sc0000038:1256560..1259738+ >transcript:BL90623_cuf0 ID=transcript:BL90623_cuf0|Name=transcript:BL90623_cuf0|organism=Branchiostoma lanceolatum|type=CDS|length=612bp|location=Sequence derived from alignment at Sc0000038:1256560..1259738+ (Branchiostoma lanceolatum)
ATGAATGCATGGCTATCAGTCAAGAGGAACCAGAGCAGCTTCCCCCGGAC
AATGATGCTGAGATGCCGCCAGATAGGACATCCAGTGGTGTTCAAGTGTG
CTTGCACCACCAACAAGAAATGTTGCCATTCAGAACCTTATTCTGATTTG
TCTTTGGACACAGAGTATGAGCCATCAAGCAACAAATGGGGAGGACCCGT
GTACTTCCTTTGGAACAGGAGCAGTTCACCAGTCAAACACAACATTTTTG
GCAATGTACAGAAGTTAGCACCCTTTTGCATGCAACTTCAAAAAGCCTCA
GGATGAATGAATGCATGGCTATCAGTCAAGAGGAACCAGAGCAGCTTCCC
CCGGACAATGATGCTGAGATGCCGCCAGATAGGACATCCAGTGGTGTTCA
AGTGTGCTTGCACCACCAACAAGAAATGTTGCCATTCAGAACCTTATTCT
GATTTGTCTTTGGACACAGAGTATGAGCCATCAAGCAACAAATGGGGAGG
ACCCGTGTACTTCCTTTGGAACAGGAGCAGTTCACCAGTCAAACACAACA
TTTTTGGCAATGTACAGAAGTTAGCACCCTTTTGCATGCAACTTCAAAAA
GCCTCAGGATGA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000038 | genome | Sc0000038:1256560..1259738 + |
Properties
| Property Name | Value |
|---|
| Transcript id | BL90623_cuf0 |
| Biotype | protein_coding |
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