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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL90378_cuf0 >transcript:BL90378_cuf0-protein ID=transcript:BL90378_cuf0-protein|Name=transcript:BL90378_cuf0|organism=Branchiostoma lanceolatum|type=polypeptide|length=314bp
MKLWKKATNILPNKFIDGELEVSDPKAIVDKFNDFFVNIGPSLAKEIDET
DISPESYLLNSYPPISSFEEPTATEIHDIIMNLKNAAPGQDEISALLLKQ
IVPEILEPITHVFRTSLRNGVVPADLKIAKVIPLYKAGDPCVFTNYRPIS
ILPAFSKILEKLVYKRIVNHLEINNILYAHQYGFRKKYSTYMALLPLVDK
ITTSLENNEYTIGIFLDLSKAFDTVDHNILLNKLFTYGFTDSALRWLKDY
LTNRKQFVSNRNNISSQNVLTCGVPQGSILGPLLFLIYVNDLASVSNKLF
ALLFADDTNLFMSH Run BLAST on NCBI mRNA from alignment at Sc0000036:267761..270160+ Legend: five_prime_UTRexonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL90378_cuf0 ID=transcript:BL90378_cuf0|Name=transcript:BL90378_cuf0|organism=Branchiostoma lanceolatum|type=mRNA|length=2400bp|location=Sequence derived from alignment at Sc0000036:267761..270160+ (Branchiostoma lanceolatum)
TTGTATAATACTATATACGCTACATTACAAATACTTTATCTATGACTATG
GCTACCCCTGAAACAAACAAAAAACAAGGAATACAAACTTCAGGTAAGTA
CATCTTTGATAATGACAATTTGATTTTTGACCCTTTCTTATTAAATAACA
CAAAATATACAGATAACTGGGACCCTGACGTAAATCTTTTAAGAAACTCT
ACAGACAATTCGTGCCAGTATTTCTCAGAAAACTCGTTTTCCACTTTGTG
CAATACACTACCCAAGAATACATTTTCAATTCTACATCTTAATATTAGAA
GCCTCCCACGTAACCACGATCATTTCGTGCATTATCTGTCCACTCTTCGC
CATGAGTTTTCCATCATTGGTCTCACCGAGACATGGCTACAAGATTCCAC
CTCACATCTGTATGATATACCTAATTACACTTCTATACATTGTTGTAGAT
CAACCAGAATGGGTGGGGGAGTGTCCATCTTATTACACGAGAGCATGCAA
TTCATAGAACGTAAAGATCTTGCTATACAAGCAGAAAATGGACAAATTGA
ATCAATGTTTATAGAAATNGAACGTTAAGATCTTGCTATACAAGCAGAAA
ATGGACAAATTGAATCAATGTTTATAGAAATCCCCGCATCTTCATTGACA
ACGGCAAAGAGCCTTATAATAGGCTGCATTTATCGGCCCCCAAATTCGGA
TATAAAAACATTCATAAGTGACCTTACCCTGACCTTAGATGCTATCGATA
AAGAAGGCAAAAACTGTTATTTGATTGGCGATTTCAATCTTGATCTTCTA
AAAAGTGAAAATCACTCATTAACTGCGGACTTCCTAAATACTTTGTATTC
GTGTAGTTATTTTCCAACTATCACTAAACCGTCAAGAATAACAAAAACCT
CAGCGACATTGATAGATAACATATTGACGAATTCTTTAACGAGCCCATGC
ACATCAGGTCTCCTTGTTACAGATATATCTGATCATCTTCCAATATTCCA
CATTATAGAACATGTATGTAATAGAGACAAGAAAATTGAATATGAAAAAC
GCAAGTGCAGGAAATTCAATAGAAAAAATATTGATAGTTTTAAACATGTT
TTATCCGAGGAAACTTGGGATTGTGTACAAAACAACACAAATGCAAATTC
TGCTTATTGTGACTTCATGCAAATTTTTAATTCACACTTTGACACATGTT
TCCCCCTATCAAACTCTACAGCAAAGCAAAATCTAGGCATCAACAAGCCT
TGGTTTACTACAGGTCTCCGCAAGTCCTCTAAAATGAAAAATAGACTCTA
CAAGAAATATTTTAAAAATCCTACACCAACAAAACTGCATAGTTACAAAT
CGTACAGAAACAAATTCAACAGGCTGATTCGTAATTGCAAAAGGAAATAT
TACCAAGACCAATTTACAGCTGCATCCACTAACATACGAAAAACCTGGAA
ACTAATCAATGAAATTATGGAAAAAGGCAACTAATATTCTTCCGAATAAA
TTTATTGATGGGGAATTGGAGGTATCTGATCCAAAAGCCATAGTAGACAA
ATTTAATGATTTTTTTGTAAACATTGGCCCCTCTCTTGCAAAAGAAATTG
ATGAAACAGATATTTCTCCTGAGTCATACCTTTTAAATTCGTACCCACCT
ATAAGCTCTTTTGAAGAACCCACCGCAACGGAAATCCATGATATAATTAT
GAATTTAAAAAACGCAGCTCCTGGCCAAGACGAAATAAGTGCCTTGCTGT
TAAAACAGATTGTTCCCGAAATTCTAGAGCCAATAACACATGTTTTTAGG
ACTTCTCTGAGAAACGGAGTAGTGCCAGCAGACCTTAAAATAGCCAAAGT
TATACCATTGTACAAAGCCGGAGATCCGTGTGTTTTCACCAATTATCGTC
CAATATCAATCTTACCGGCCTTCTCAAAAATCTTGGAAAAATTAGTTTAT
AAACGGATTGTGAATCACCTTGAAATCAATAATATATTATATGCGCATCA
ATATGGATTTCGAAAAAAATACTCGACATATATGGCACTCTTGCCACTTG
TTGACAAAATCACCACATCCTTAGAAAATAACGAATACACGATAGGAATA
TTTCTTGACCTTTCCAAAGCATTCGATACAGTAGATCACAACATACTTCT
CAACAAACTATTCACCTATGGATTTACCGACTCTGCCCTTCGTTGGCTAA
AAGACTACTTAACTAACAGAAAACAGTTCGTCTCTAATAGAAATAATATT
TCCTCCCAAAATGTCTTAACATGTGGCGTACCACAAGGATCCATTCTTGG
TCCCCTCTTGTTTTTAATTTATGTTAACGACTTGGCATCAGTATCAAATA
AATTATTTGCTCTGTTATTTGCAGATGATACAAACTTATTTATGTCCCAC
Coding sequence (CDS) from alignment at Sc0000036:267761..270160+ >transcript:BL90378_cuf0 ID=transcript:BL90378_cuf0|Name=transcript:BL90378_cuf0|organism=Branchiostoma lanceolatum|type=CDS|length=942bp|location=Sequence derived from alignment at Sc0000036:267761..270160+ (Branchiostoma lanceolatum)
ATGAAATTATGGAAAAAGGCAACTAATATTCTTCCGAATAAATTTATTGA
TGGGGAATTGGAGGTATCTGATCCAAAAGCCATAGTAGACAAATTTAATG
ATTTTTTTGTAAACATTGGCCCCTCTCTTGCAAAAGAAATTGATGAAACA
GATATTTCTCCTGAGTCATACCTTTTAAATTCGTACCCACCTATAAGCTC
TTTTGAAGAACCCACCGCAACGGAAATCCATGATATAATTATGAATTTAA
AAAACGCAGCTCCTGGCCAAGACGAAATAAGTGCCTTGCTGTTAAAACAG
ATTGTTCCCGAAATTCTAGAGCCAATAACACATGTTTTTAGGACTTCTCT
GAGAAACGGAGTAGTGCCAGCAGACCTTAAAATAGCCAAAGTTATACCAT
TGTACAAAGCCGGAGATCCGTGTGTTTTCACCAATTATCGTCCAATATCA
ATCTTACCGGCCTTCTCAAAAATCTTGGAAAAATTAGTTTATAAACGGAT
TGTGAATCACCTTGAAATCAATAATATATTATATGCGCATCAATATGGAT
TTCGAAAAAAATACTCGACATATATGGCACTCTTGCCACTTGTTGACAAA
ATCACCACATCCTTAGAAAATAACGAATACACGATAGGAATATTTCTTGA
CCTTTCCAAAGCATTCGATACAGTAGATCACAACATACTTCTCAACAAAC
TATTCACCTATGGATTTACCGACTCTGCCCTTCGTTGGCTAAAAGACTAC
TTAACTAACAGAAAACAGTTCGTCTCTAATAGAAATAATATTTCCTCCCA
AAATGTCTTAACATGTGGCGTACCACAAGGATCCATTCTTGGTCCCCTCT
TGTTTTTAATTTATGTTAACGACTTGGCATCAGTATCAAATAAATTATTT
GCTCTGTTATTTGCAGATGATACAAACTTATTTATGTCCCAC
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000036 | genome | Sc0000036:267761..270160 + |
Properties
| Property Name | Value |
|---|
| Transcript id | BL90378_cuf0 |
| Biotype | protein_coding |
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