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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL90290_cuf1 >transcript:BL90290_cuf1-protein ID=transcript:BL90290_cuf1-protein|Name=transcript:BL90290_cuf1|organism=Branchiostoma lanceolatum|type=polypeptide|length=472bp
MADTYQSSHAGVRKSFFLIKEGVSSDWKDLAFHLGFGRADIDNIAGRNRD
DKSCCMDLLEEWLKRNGERATVEALVDALSEANLQSTVDRLRKTTISALD
TSQSDTQRKRKKESGGQSEQRLQIKRVLQEAVKGFYEVKLTKFKTLIWND
NFTLNLGDIFTELQLIGTRQNGIEQQIRTLRSLDDLFDQNFRGLSTPPRC
ILIEGEAGGGKTTFLSKEALDAISQKTELGRRHDIVLLIRLREVREGETI
EEIVWDQCVPETTEDVDVQSIRAILKRNESRVLFLLDGYDELRPETKAAR
QAIPKLLSGKMYPKSTIVITSRPTAGVQQFIQPDCHVRIIGFSPEHMEKY
VQQYFNITENPGLAKGLITILTEKQPVVDLIHTPIFLMLVCLLWEEDPNM
VSHGTMTGVYSDLLTCLGRKHCKREGVDMPADGLPGDIAASLLQLGKFAL
EALLRNETLLDIEALTPDELDW Run BLAST on NCBI mRNA from alignment at Sc0000016:1017320..1020140+ Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL90290_cuf1 ID=transcript:BL90290_cuf1|Name=transcript:BL90290_cuf1|organism=Branchiostoma lanceolatum|type=mRNA|length=2821bp|location=Sequence derived from alignment at Sc0000016:1017320..1020140+ (Branchiostoma lanceolatum)
TGGGGGCAACTGGACTAAAACTCGGTAAAACTCCAGTTTAGCGAGCTGAA
TTTCTTCTCTGAACGCCATGTCATACCGCCATATGGATCAGGAAACTGTC
GAGATTCAACCGGCCAGACAGGAAACGGTTTAAACTACATGTAAGATTAG
CTGGAGCTTGGAAACACAAGATTTATAGGGCAATGGGTTTATACATATGT
ACATGTACAGGGACCTATAGCCTCCTAAGTTTGTATGTTATGGGTAAAAT
AGTTCTATCTGGGTGGGTTTGTAGATTCGCGTCGATAAGTCTGTGTGGAT
CAATCCTGACGACACACAAGTGTTCGTTGATATGCTTTTAATACCGTTGA
CAATGAATGTTTTTATTCCTTATGATGAACGAAACGTTCATTTGTTACAT
GATACGTTGATGATGGTAAGACAAGATGAATTCGGTGACTTTATTTTGTT
TAATTGACTTTTTTGTATTTATTTATTTGTTCCTAGGCCGACTGAGCGGC
CAAAATGGCTGACACATACCAAAGCAGTCATGCAGGTAAGATTCATGGTA
CATCTGATAGCTAGAATAGCTTATAGTCCACAGGATAACTTTTCTAGCAA
AATGTTTTTGTTTTGCCTTGATACATGCAAATACAATATATGAACTTTAG
GCGACGAAACACTGACGTTCTGCCTTATCATTGTTCCTTCATGATTCTGG
AAATTGAGACTATGTGAAAATAAAAGATCTTACCTGTAATGCTAATAATT
GCAGCACATGTGAAATAAAGGTTGTCAGGCAAGAGTGAATGCAGTACTTA
GTCACATTGTCGATGACGGAATACCTGAATGACGTTATTAAACTCTGCAT
TGTGGCGACTTGCAGGTGTTCGTAAGTCCTTCTTTCTCATCAAGGAAGGG
GTCAGCTCAGATTGGAAGGACCTGGCCTTCCATCTTGGGTTTGGGCGAGC
AGACATTGACAATATTGCCGGTAGAAACCGAGATGACAAGTCTTGCTGTA
TGGACCTGTTAGAGGAATGGCTCAAGCGTAACGGAGAGAGAGCCACCGTA
GAGGCCCTGGTAGACGCTCTGTCTGAGGCAAACTTACAAAGTACTGTGGA
CCGCCTTAGGAAAACAACAATAAGTGGTAATACTTGAGTGAAATAAATTT
GTTCTCACTAGTTCCATTTGGGGCCAAAATATAACACTTTATAATCCTAC
TTGCTTAGTTTTGTTGCTGTACTTTTTCGCTTTTGTTAGAATCTACACCA
TGTTCATGTGTCACGCTCTTCACTGTTTAGGTAATAGTCTCTTTCTTACC
TAGAATATAGTGATAACACGTTTTGATCTACTATTTTCCATTGAAAAAAT
AAAAGTCAGATAAATTGTACAATCATATTTCCAGCGTTGGACACATCACA
ATCAGATACCCAGCGGAAGAGAAAGAAGGAAAGCGGAGGCCAGTCTGAGC
AGAGGTTACAAATAAAACGTAAGATTTGTTTGGTAATCTTCTCTTACTAT
TTCATTGGTCGCTGATCTTAATGCATATGATTTGCCTGTAGTCTTATCTT
GAAAATCAGATATGGTGTGGATGTTTTCATGACAAAACATGGTTAGCAGG
TCTGTCTTGGCATTTCTTTCGCAACAAATTTAAGTATCGTTCATTCTACG
GCTTAACAGTTACCTCTACTCCAACTGATCTTTCAAGTTACAGTCATGGT
ATACTATGATAAATGTTTTCCTGTTCCCATAAAGTTTATGATTTTAAAAA
AGTCTTACGGCAGTGTACGTTTTATTTCAGGTGTGCTCCAGGAAGCTGTG
AAGGGGTTCTATGAAGTGAAGCTGACAAAATTTAAAACTCTGATCTGGAA
TGACAACTTTACGCTTAACCTCGGTGATATTTTTACGGAGTTACAGTTGA
TAGGGACACGGCAAAATGGAATAGAACAACAAATAAGAACATTACGTTCT
CTAGACGACTTGTTCGACCAAAATTTCAGAGGACTGTCCACACCACCAAG
GTGCATTCTGATTGAGGGTGAAGCCGGAGGGGGAAAGACAACGTTTCTGT
CCAAAGAAGCCCTAGATGCCATCTCACAGAAAACAGAGCTGGGCAGACGG
CACGACATCGTCCTGTTGATCCGACTCCGGGAGGTGAGAGAGGGGGAGAC
CATAGAGGAGATAGTGTGGGACCAGTGTGTTCCTGAAACAACTGAGGATG
TTGATGTACAGTCCATCAGAGCAATCCTAAAGAGGAACGAGTCCCGTGTG
CTCTTCCTCCTAGACGGGTATGATGAGCTGCGGCCTGAGACCAAGGCAGC
CAGACAGGCCATTCCCAAGCTTCTGTCTGGGAAGATGTACCCCAAGAGCA
CGATCGTGATCACCTCCCGACCAACAGCAGGAGTGCAGCAGTTCATCCAG
CCAGACTGCCATGTACGCATCATTGGCTTCTCCCCTGAACATATGGAAAA
ATATGTGCAGCAGTATTTCAACATCACTGAAAACCCTGGTCTCGCAAAGG
GGCTCATCACAATTCTCACGGAAAAGCAGCCCGTTGTTGATCTAATCCAT
ACACCGATTTTCCTGATGTTGGTCTGTCTGCTGTGGGAGGAGGATCCAAA
CATGGTCTCTCATGGTACGATGACGGGAGTATATAGCGATCTGCTGACTT
GTCTGGGTAGAAAGCACTGTAAGCGGGAAGGAGTGGACATGCCGGCAGAC
GGGCTACCTGGAGACATCGCTGCTTCATTACTGCAGCTCGGTAAGTTTGC
GCTAGAGGCGCTGCTGAGGAACGAGACTCTGCTTGACATTGAAGCATTAA
CCCCAGATGAGTTGGATTGGG Coding sequence (CDS) from alignment at Sc0000016:1017320..1020140+ >transcript:BL90290_cuf1 ID=transcript:BL90290_cuf1|Name=transcript:BL90290_cuf1|organism=Branchiostoma lanceolatum|type=CDS|length=5664bp|location=Sequence derived from alignment at Sc0000016:1017320..1020140+ (Branchiostoma lanceolatum)
ATGGCTGACACATACCAAAGCAGTCATGCAGGTGTTCGTAAGTCCTTCTT
TCTCATCAAGGAAGGGGTCAGCTCAGATTGGAAGGACCTGGCCTTCCATC
TTGGGTTTGGGCGAGCAGACATTGACAATATTGCCGGTAGAAACCGAGAT
GACAAGTCTTGCTGTATGGACCTGTTAGAGGAATGGCTCAAGCGTAACGG
AGAGAGAGCCACCGTAGAGGCCCTGGTAGACGCTCTGTCTGAGGCAAACT
TACAAAGTACTGTGGACCGCCTTAGGAAAACAACAATAAGTGCGTTGGAC
ACATCACAATCAGATACCCAGCGGAAGAGAAAGAAGGAAAGCGGAGGCCA
GTCTGAGCAGAGGTTACAAATAAAACGTGTGCTCCAGGAAGCTGTGAAGG
GGTTCTATGAAGTGAAGCTGACAAAATTTAAAACTCTGATCTGGAATGAC
AACTTTACGCTTAACCTCGGTGATATTTTTACGGAGTTACAGTTGATAGG
GACACGGCAAAATGGAATAGAACAACAAATAAGAACATTACGTTCTCTAG
ACGACTTGTTCGACCAAAATTTCAGAGGACTGTCCACACCACCAAGGTGC
ATTCTGATTGAGGGTGAAGCCGGAGGGGGAAAGACAACGTTTCTGTCCAA
AGAAGCCCTAGATGCCATCTCACAGAAAACAGAGCTGGGCAGACGGCACG
ACATCGTCCTGTTGATCCGACTCCGGGAGGTGAGAGAGGGGGAGACCATA
GAGGAGATAGTGTGGGACCAGTGTGTTCCTGAAACAACTGAGGATGTTGA
TGTACAGTCCATCAGAGCAATCCTAAAGAGGAACGAGTCCCGTGTGCTCT
TCCTCCTAGACGGGTATGATGAGCTGCGGCCTGAGACCAAGGCAGCCAGA
CAGGCCATTCCCAAGCTTCTGTCTGGGAAGATGTACCCCAAGAGCACGAT
CGTGATCACCTCCCGACCAACAGCAGGAGTGCAGCAGTTCATCCAGCCAG
ACTGCCATGTACGCATCATTGGCTTCTCCCCTGAACATATGGAAAAATAT
GTGCAGCAGTATTTCAACATCACTGAAAACCCTGGTCTCGCAAAGGGGCT
CATCACAATTCTCACGGAAAAGCAGCCCGTTGTTGATCTAATCCATACAC
CGATTTTCCTGATGTTGGTCTGTCTGCTGTGGGAGGAGGATCCAAACATG
GTCTCTCATGGTACGATGACGGGAGTATATAGCGATCTGCTGACTTGTCT
GGGTAGAAAGCACTGTAAGCGGGAAGGAGTGGACATGCCGGCAGACGGGC
TACCTGGAGACATCGCTGCTTCATTACTGCAGCTCGGTAAGTTTGCGCTA
GAGGCGCTGCTGAGGAACGAGACTCTGCTTGACATTGAAGCATTAACCCC
AGATGAGTTGGATTGGATGGCTGACACATACCAAAGCAGTCATGCAGGTG
TTCGTAAGTCCTTCTTTCTCATCAAGGAAGGGGTCAGCTCAGATTGGAAG
GACCTGGCCTTCCATCTTGGGTTTGGGCGAGCAGACATTGACAATATTGC
CGGTAGAAACCGAGATGACAAGTCTTGCTGTATGGACCTGTTAGAGGAAT
GGCTCAAGCGTAACGGAGAGAGAGCCACCGTAGAGGCCCTGGTAGACGCT
CTGTCTGAGGCAAACTTACAAAGTACTGTGGACCGCCTTAGGAAAACAAC
AATAAGTGCGTTGGACACATCACAATCAGATACCCAGCGGAAGAGAAAGA
AGGAAAGCGGAGGCCAGTCTGAGCAGAGGTTACAAATAAAACGTGTGCTC
CAGGAAGCTGTGAAGGGGTTCTATGAAGTGAAGCTGACAAAATTTAAAAC
TCTGATCTGGAATGACAACTTTACGCTTAACCTCGGTGATATTTTTACGG
AGTTACAGTTGATAGGGACACGGCAAAATGGAATAGAACAACAAATAAGA
ACATTACGTTCTCTAGACGACTTGTTCGACCAAAATTTCAGAGGACTGTC
CACACCACCAAGGTGCATTCTGATTGAGGGTGAAGCCGGAGGGGGAAAGA
CAACGTTTCTGTCCAAAGAAGCCCTAGATGCCATCTCACAGAAAACAGAG
CTGGGCAGACGGCACGACATCGTCCTGTTGATCCGACTCCGGGAGGTGAG
AGAGGGGGAGACCATAGAGGAGATAGTGTGGGACCAGTGTGTTCCTGAAA
CAACTGAGGATGTTGATGTACAGTCCATCAGAGCAATCCTAAAGAGGAAC
GAGTCCCGTGTGCTCTTCCTCCTAGACGGGTATGATGAGCTGCGGCCTGA
GACCAAGGCAGCCAGACAGGCCATTCCCAAGCTTCTGTCTGGGAAGATGT
ACCCCAAGAGCACGATCGTGATCACCTCCCGACCAACAGCAGGAGTGCAG
CAGTTCATCCAGCCAGACTGCCATGTACGCATCATTGGCTTCTCCCCTGA
ACATATGGAAAAATATGTGCAGCAGTATTTCAACATCACTGAAAACCCTG
GTCTCGCAAAGGGGCTCATCACAATTCTCACGGAAAAGCAGCCCGTTGTT
GATCTAATCCATACACCGATTTTCCTGATGTTGGTCTGTCTGCTGTGGGA
GGAGGATCCAAACATGGTCTCTCATGGTACGATGACGGGAGTATATAGCG
ATCTGCTGACTTGTCTGGGTAGAAAGCACTGTAAGCGGGAAGGAGTGGAC
ATGCCGGCAGACGGGCTACCTGGAGACATCGCTGCTTCATTACTGCAGCT
CGGTAAGTTTGCGCTAGAGGCGCTGCTGAGGAACGAGACTCTGCTTGACA
TTGAAGCATTAACCCCAGATGAGTTGGATTGGATGGCTGACACATACCAA
AGCAGTCATGCAGGTGTTCGTAAGTCCTTCTTTCTCATCAAGGAAGGGGT
CAGCTCAGATTGGAAGGACCTGGCCTTCCATCTTGGGTTTGGGCGAGCAG
ACATTGACAATATTGCCGGTAGAAACCGAGATGACAAGTCTTGCTGTATG
GACCTGTTAGAGGAATGGCTCAAGCGTAACGGAGAGAGAGCCACCGTAGA
GGCCCTGGTAGACGCTCTGTCTGAGGCAAACTTACAAAGTACTGTGGACC
GCCTTAGGAAAACAACAATAAGTGCGTTGGACACATCACAATCAGATACC
CAGCGGAAGAGAAAGAAGGAAAGCGGAGGCCAGTCTGAGCAGAGGTTACA
AATAAAACGTGTGCTCCAGGAAGCTGTGAAGGGGTTCTATGAAGTGAAGC
TGACAAAATTTAAAACTCTGATCTGGAATGACAACTTTACGCTTAACCTC
GGTGATATTTTTACGGAGTTACAGTTGATAGGGACACGGCAAAATGGAAT
AGAACAACAAATAAGAACATTACGTTCTCTAGACGACTTGTTCGACCAAA
ATTTCAGAGGACTGTCCACACCACCAAGGTGCATTCTGATTGAGGGTGAA
GCCGGAGGGGGAAAGACAACGTTTCTGTCCAAAGAAGCCCTAGATGCCAT
CTCACAGAAAACAGAGCTGGGCAGACGGCACGACATCGTCCTGTTGATCC
GACTCCGGGAGGTGAGAGAGGGGGAGACCATAGAGGAGATAGTGTGGGAC
CAGTGTGTTCCTGAAACAACTGAGGATGTTGATGTACAGTCCATCAGAGC
AATCCTAAAGAGGAACGAGTCCCGTGTGCTCTTCCTCCTAGACGGGTATG
ATGAGCTGCGGCCTGAGACCAAGGCAGCCAGACAGGCCATTCCCAAGCTT
CTGTCTGGGAAGATGTACCCCAAGAGCACGATCGTGATCACCTCCCGACC
AACAGCAGGAGTGCAGCAGTTCATCCAGCCAGACTGCCATGTACGCATCA
TTGGCTTCTCCCCTGAACATATGGAAAAATATGTGCAGCAGTATTTCAAC
ATCACTGAAAACCCTGGTCTCGCAAAGGGGCTCATCACAATTCTCACGGA
AAAGCAGCCCGTTGTTGATCTAATCCATACACCGATTTTCCTGATGTTGG
TCTGTCTGCTGTGGGAGGAGGATCCAAACATGGTCTCTCATGGTACGATG
ACGGGAGTATATAGCGATCTGCTGACTTGTCTGGGTAGAAAGCACTGTAA
GCGGGAAGGAGTGGACATGCCGGCAGACGGGCTACCTGGAGACATCGCTG
CTTCATTACTGCAGCTCGGTAAGTTTGCGCTAGAGGCGCTGCTGAGGAAC
GAGACTCTGCTTGACATTGAAGCATTAACCCCAGATGAGTTGGATTGGAT
GGCTGACACATACCAAAGCAGTCATGCAGGTGTTCGTAAGTCCTTCTTTC
TCATCAAGGAAGGGGTCAGCTCAGATTGGAAGGACCTGGCCTTCCATCTT
GGGTTTGGGCGAGCAGACATTGACAATATTGCCGGTAGAAACCGAGATGA
CAAGTCTTGCTGTATGGACCTGTTAGAGGAATGGCTCAAGCGTAACGGAG
AGAGAGCCACCGTAGAGGCCCTGGTAGACGCTCTGTCTGAGGCAAACTTA
CAAAGTACTGTGGACCGCCTTAGGAAAACAACAATAAGTGCGTTGGACAC
ATCACAATCAGATACCCAGCGGAAGAGAAAGAAGGAAAGCGGAGGCCAGT
CTGAGCAGAGGTTACAAATAAAACGTGTGCTCCAGGAAGCTGTGAAGGGG
TTCTATGAAGTGAAGCTGACAAAATTTAAAACTCTGATCTGGAATGACAA
CTTTACGCTTAACCTCGGTGATATTTTTACGGAGTTACAGTTGATAGGGA
CACGGCAAAATGGAATAGAACAACAAATAAGAACATTACGTTCTCTAGAC
GACTTGTTCGACCAAAATTTCAGAGGACTGTCCACACCACCAAGGTGCAT
TCTGATTGAGGGTGAAGCCGGAGGGGGAAAGACAACGTTTCTGTCCAAAG
AAGCCCTAGATGCCATCTCACAGAAAACAGAGCTGGGCAGACGGCACGAC
ATCGTCCTGTTGATCCGACTCCGGGAGGTGAGAGAGGGGGAGACCATAGA
GGAGATAGTGTGGGACCAGTGTGTTCCTGAAACAACTGAGGATGTTGATG
TACAGTCCATCAGAGCAATCCTAAAGAGGAACGAGTCCCGTGTGCTCTTC
CTCCTAGACGGGTATGATGAGCTGCGGCCTGAGACCAAGGCAGCCAGACA
GGCCATTCCCAAGCTTCTGTCTGGGAAGATGTACCCCAAGAGCACGATCG
TGATCACCTCCCGACCAACAGCAGGAGTGCAGCAGTTCATCCAGCCAGAC
TGCCATGTACGCATCATTGGCTTCTCCCCTGAACATATGGAAAAATATGT
GCAGCAGTATTTCAACATCACTGAAAACCCTGGTCTCGCAAAGGGGCTCA
TCACAATTCTCACGGAAAAGCAGCCCGTTGTTGATCTAATCCATACACCG
ATTTTCCTGATGTTGGTCTGTCTGCTGTGGGAGGAGGATCCAAACATGGT
CTCTCATGGTACGATGACGGGAGTATATAGCGATCTGCTGACTTGTCTGG
GTAGAAAGCACTGTAAGCGGGAAGGAGTGGACATGCCGGCAGACGGGCTA
CCTGGAGACATCGCTGCTTCATTACTGCAGCTCGGTAAGTTTGCGCTAGA
GGCGCTGCTGAGGAACGAGACTCTGCTTGACATTGAAGCATTAACCCCAG
ATGAGTTGGATTGG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000016 | genome | Sc0000016:1017320..1020140 + |
Properties
| Property Name | Value |
|---|
| Transcript id | BL90290_cuf1 |
| Biotype | protein_coding |
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