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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL90273_cuf0 >transcript:BL90273_cuf0-protein ID=transcript:BL90273_cuf0-protein|Name=transcript:BL90273_cuf0|organism=Branchiostoma lanceolatum|type=polypeptide|length=349bp
TDPSPMYTQNTVNANPTQEPTIISELACRPESSHGNPENDLDDNNMSTED
STAARNGQTRDTVLTENLPSEVTPSGNTNEISGHTGMAQPGSETETREPS
FLQAESDGMAGPPLQSAEEDNGNYDDDDDKPVRRDDGHEVGQTVDMASDE
VDIEPYAVAYISTDHVASSASSEATQTKELFLDTTACNSKHEANTSDIVG
DDRTLHNLRRSPNALNSNPMYAKNALNPNPMHVPNAHKQAGCRYRRACVA
ATAAAFILVLITGGIVGVFFGIVRKDTQNAMPTYGPSGEAVLTVTSTSDS
YQEKYGGNINTGNIGAGINEPTPSVDTIHITGDTVSFSSSRTRTDPLYM Run BLAST on NCBI mRNA from alignment at Sc0000214:177943..180924+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL90273_cuf0 ID=transcript:BL90273_cuf0|Name=transcript:BL90273_cuf0|organism=Branchiostoma lanceolatum|type=mRNA|length=2982bp|location=Sequence derived from alignment at Sc0000214:177943..180924+ (Branchiostoma lanceolatum)
GACTGACCCAAGTCCAATGTACACACAAAATACCGTGAACGCCAACCCGA
CTCAAGAGCCAACCATTATCTCTGAGCTTGCCTGCAGGCCAGAGAGCAGT
CATGGGAATCCCGAAAATGATCTTGATGACAATAACATGTCAACGGAAGA
TAGCACTGCAGCTAGGAATGGACAAACGAGGGATACCGTTCTGACTGAGA
ACCTGCCCTCCGAGGTCACACCAAGTGGCAACACGAATGAAATTTCCGGA
CATACTGGTATGGCGCAGCCAGGTTCGGAAACAGAAACAAGGGAACCTTC
CTTTTTACAAGCTGAAAGTGATGGCATGGCGGGACCTCCTCTGCAATCTG
CGGAAGAGGACAATGGTAATTATGATGATGATGATGACAAGCCTGTAAGA
AGGGATGATGGACATGAGGTCGGACAAACAGTCGATATGGCCTCCGACGA
GGTCGATATTGAACCATATGCTGTTGCATATATTAGCACAGACCACGTAG
CATCCTCTGCAAGTTCGGAAGCTACACAAACGAAAGAGCTCTTTCTTGAC
ACTACCGCATGTAATTCCAAGCATGAAGCTAATACTTCTGACATTGTCGG
GGATGATCGTACTTTACATAATCTTCGACGTTCCCCGAATGCCCTTAATT
CAAATCCTATGTACGCGAAAAACGCCCTCAACCCGAATCCGATGCACGTG
CCAAATGCTCACAAGCAAGCAGGTAATATGTGTTTACTTTTAACTAATTT
ACTCGTAAAACTAATGTGCATTTTTCATTACAACTTTTGACTAGAAGGCT
ATATTTTGGACAACGTTTGTGTGCGTGTCTTTGGTTATCAAGATAACTCA
ATAACAACTTAAATAGATTGGCTTTATATCTAGCTTGCTGGTAGTTTATG
GCAAAAACTGGAAATAATTGGATTTTGGGTCCCCTATTGACTTGTTTTGG
TGCTGCAGTGAAACTTTCGGTTCTGATATCTAGCGCTCTGACATCGATGG
TCATGATTTTTGGTGGTAACGTTAGGTCGTTGAACTCTAGTTTCCATTAT
TTCCATTATTTGTCATATTTATAAATGGTTTATTCAGGAATTGACACATA
CAGAAATCAAAACAGCATTGCAGCCGTTTTTGCAATATTTGTTTTGTTTG
TTTCAAACATCCCATTACTTTGTGGAATTATATTGATGTGATTTTCGCAG
TAATGTACCTAGCTTACCATGTACCTTTGTCTTATGTTTTGTTATACCAT
ACTTCAATTATGTACGCCAGCAGGGCCCTTTGAAGTGGCGATACATGGCT
TAAAAAATTGATAAAATGTTTCGATCTGACATTCGACATTGGTTCAGGAA
AAAGTATCACCTTTCCATTTCCTTTCTTTTAATAAATAGCCCATTAGAAT
ATATATATTTCTTTCCAACGCAAAGAAGTTGCTTTGATATATGTGATTTT
CAGGGTGCAGGTATCGCCGGGCATGTGTTGCTGCAACAGCAGCAGCTTTT
ATCTTGGTGCTGATCACTGGAGGCATTGTTGGAGTTTTCTTTGGTATTGT
CAGAAAGGATACCCAAAATGTAAGTTTAAGCCTATACGCGTCTTGTTTAT
TGCCAAATGTATCTATTTCGTTTAGCACCTAAAAGTTACCCATATCTGAC
TATAAGCATTTCCCAAGCTTCTGTCCGTTTGTTTATAGCGTTAATCATGT
CTGTTATTTTACTTTATTTAAAAGTACCTTCTACAACTCGCTGCGGTAAA
AATACGTGGTACAGCAGGGCAAGTAGGCATTTCAAACATGTATATCCCCC
TGCTATGAAATGTTATCACATGACTGATTATTCTCAAATGATGTCAAATC
ACAGGCAATGCCCACTTATGGTCCATCTGGGGAAGCAGTGCTCACAGTGA
CGTCAACATCTGACAGCTATCAAGGTGAACATACGAGTGGGAGGGGTGGG
GAGAAAATGTGGAACTGCACCCTAAGTTGAAGATAAGATTCAACGTGCCC
TTTGTAGATTTGTTTTCAGATCAGAGATAGAAGAAGGACTTGACAATGTT
TCAAATAGCATGTAACATTGCGCAAGGGAATGTAAAGTTATTGAATGTCA
AAAAGCCATGGTATTATATTCATGAAATATGTAACACTGAACACTGTGAT
CACTTATTTACAGAAAAATACGGAGGAAACATCAACACCGGGAACATTGG
GGCGGGTATTAACGAGGTACGTTTCCGCATTTTATTCTTGTCCTAATCTC
TCCTTGTACGGAGGTATTGTTTTAGGTGTGTCTATCTCCAGTGTGTTTCC
GCAGGTATTCCCATATTCTATACATACTAGCAGTACCACAGAGTGAAAGG
AAGTGAGGGGCAAAATTTCAGAGGTGCGGGAGTGACAGGAAGTAAGGTTC
AGAGTAGGTAGTATACAGCCATTCATCATCCTTCTCTGAGTGTTGAAAGA
CGTTCCAGGTCATTGGGTCAATTGAAGAGGCTAAGAATTTTTTTTCATCT
GTATTTTCCAGATGCCAGTCACTTTTACCGTAGGGTGACAGGAAGAGACC
AATGTACACATGTAATGTGAATCAAAACCTTAAGCTTATTTGCATAATCA
ATGAACTACAAGCAAATGAGATATGCCGGGAACTCTGAATATTTCACGGA
AATATGAGGTCTTTGAACTCTTTTTTTGGTAACGACTATTGACTTCAAGC
GTCGTGGCTACTTTCAGTTCGGGAAATATCGTTTTTAAGCTGGTGGGAAC
ATACTTCGAAGATACTAAGACCAACCCAGTTAGATTTCTTGTAGTTTTTC
TCAGCTGCATCGTTCATTTTTCGCCAATGTGCGATGTGATATACTAATCT
AAAAGTAGATAAACCAGTTAATGGGATATCTTCGTTATCTACAGCCGACA
CCATCTGTGGATACGATCCATATCACTGGCGATACTGTCTCCTTCAGTTC
GTCAAGGACGCGTACCGACCCTCTGTACATGC Coding sequence (CDS) from alignment at Sc0000214:177943..180924+ >transcript:BL90273_cuf0 ID=transcript:BL90273_cuf0|Name=transcript:BL90273_cuf0|organism=Branchiostoma lanceolatum|type=CDS|length=5235bp|location=Sequence derived from alignment at Sc0000214:177943..180924+ (Branchiostoma lanceolatum)
ACTGACCCAAGTCCAATGTACACACAAAATACCGTGAACGCCAACCCGAC
TCAAGAGCCAACCATTATCTCTGAGCTTGCCTGCAGGCCAGAGAGCAGTC
ATGGGAATCCCGAAAATGATCTTGATGACAATAACATGTCAACGGAAGAT
AGCACTGCAGCTAGGAATGGACAAACGAGGGATACCGTTCTGACTGAGAA
CCTGCCCTCCGAGGTCACACCAAGTGGCAACACGAATGAAATTTCCGGAC
ATACTGGTATGGCGCAGCCAGGTTCGGAAACAGAAACAAGGGAACCTTCC
TTTTTACAAGCTGAAAGTGATGGCATGGCGGGACCTCCTCTGCAATCTGC
GGAAGAGGACAATGGTAATTATGATGATGATGATGACAAGCCTGTAAGAA
GGGATGATGGACATGAGGTCGGACAAACAGTCGATATGGCCTCCGACGAG
GTCGATATTGAACCATATGCTGTTGCATATATTAGCACAGACCACGTAGC
ATCCTCTGCAAGTTCGGAAGCTACACAAACGAAAGAGCTCTTTCTTGACA
CTACCGCATGTAATTCCAAGCATGAAGCTAATACTTCTGACATTGTCGGG
GATGATCGTACTTTACATAATCTTCGACGTTCCCCGAATGCCCTTAATTC
AAATCCTATGTACGCGAAAAACGCCCTCAACCCGAATCCGATGCACGTGC
CAAATGCTCACAAGCAAGCAGGGTGCAGGTATCGCCGGGCATGTGTTGCT
GCAACAGCAGCAGCTTTTATCTTGGTGCTGATCACTGGAGGCATTGTTGG
AGTTTTCTTTGGTATTGTCAGAAAGGATACCCAAAATGCAATGCCCACTT
ATGGTCCATCTGGGGAAGCAGTGCTCACAGTGACGTCAACATCTGACAGC
TATCAAGAAAAATACGGAGGAAACATCAACACCGGGAACATTGGGGCGGG
TATTAACGAGCCGACACCATCTGTGGATACGATCCATATCACTGGCGATA
CTGTCTCCTTCAGTTCGTCAAGGACGCGTACCGACCCTCTGTACATGACT
GACCCAAGTCCAATGTACACACAAAATACCGTGAACGCCAACCCGACTCA
AGAGCCAACCATTATCTCTGAGCTTGCCTGCAGGCCAGAGAGCAGTCATG
GGAATCCCGAAAATGATCTTGATGACAATAACATGTCAACGGAAGATAGC
ACTGCAGCTAGGAATGGACAAACGAGGGATACCGTTCTGACTGAGAACCT
GCCCTCCGAGGTCACACCAAGTGGCAACACGAATGAAATTTCCGGACATA
CTGGTATGGCGCAGCCAGGTTCGGAAACAGAAACAAGGGAACCTTCCTTT
TTACAAGCTGAAAGTGATGGCATGGCGGGACCTCCTCTGCAATCTGCGGA
AGAGGACAATGGTAATTATGATGATGATGATGACAAGCCTGTAAGAAGGG
ATGATGGACATGAGGTCGGACAAACAGTCGATATGGCCTCCGACGAGGTC
GATATTGAACCATATGCTGTTGCATATATTAGCACAGACCACGTAGCATC
CTCTGCAAGTTCGGAAGCTACACAAACGAAAGAGCTCTTTCTTGACACTA
CCGCATGTAATTCCAAGCATGAAGCTAATACTTCTGACATTGTCGGGGAT
GATCGTACTTTACATAATCTTCGACGTTCCCCGAATGCCCTTAATTCAAA
TCCTATGTACGCGAAAAACGCCCTCAACCCGAATCCGATGCACGTGCCAA
ATGCTCACAAGCAAGCAGGGTGCAGGTATCGCCGGGCATGTGTTGCTGCA
ACAGCAGCAGCTTTTATCTTGGTGCTGATCACTGGAGGCATTGTTGGAGT
TTTCTTTGGTATTGTCAGAAAGGATACCCAAAATGCAATGCCCACTTATG
GTCCATCTGGGGAAGCAGTGCTCACAGTGACGTCAACATCTGACAGCTAT
CAAGAAAAATACGGAGGAAACATCAACACCGGGAACATTGGGGCGGGTAT
TAACGAGCCGACACCATCTGTGGATACGATCCATATCACTGGCGATACTG
TCTCCTTCAGTTCGTCAAGGACGCGTACCGACCCTCTGTACATGACTGAC
CCAAGTCCAATGTACACACAAAATACCGTGAACGCCAACCCGACTCAAGA
GCCAACCATTATCTCTGAGCTTGCCTGCAGGCCAGAGAGCAGTCATGGGA
ATCCCGAAAATGATCTTGATGACAATAACATGTCAACGGAAGATAGCACT
GCAGCTAGGAATGGACAAACGAGGGATACCGTTCTGACTGAGAACCTGCC
CTCCGAGGTCACACCAAGTGGCAACACGAATGAAATTTCCGGACATACTG
GTATGGCGCAGCCAGGTTCGGAAACAGAAACAAGGGAACCTTCCTTTTTA
CAAGCTGAAAGTGATGGCATGGCGGGACCTCCTCTGCAATCTGCGGAAGA
GGACAATGGTAATTATGATGATGATGATGACAAGCCTGTAAGAAGGGATG
ATGGACATGAGGTCGGACAAACAGTCGATATGGCCTCCGACGAGGTCGAT
ATTGAACCATATGCTGTTGCATATATTAGCACAGACCACGTAGCATCCTC
TGCAAGTTCGGAAGCTACACAAACGAAAGAGCTCTTTCTTGACACTACCG
CATGTAATTCCAAGCATGAAGCTAATACTTCTGACATTGTCGGGGATGAT
CGTACTTTACATAATCTTCGACGTTCCCCGAATGCCCTTAATTCAAATCC
TATGTACGCGAAAAACGCCCTCAACCCGAATCCGATGCACGTGCCAAATG
CTCACAAGCAAGCAGGGTGCAGGTATCGCCGGGCATGTGTTGCTGCAACA
GCAGCAGCTTTTATCTTGGTGCTGATCACTGGAGGCATTGTTGGAGTTTT
CTTTGGTATTGTCAGAAAGGATACCCAAAATGCAATGCCCACTTATGGTC
CATCTGGGGAAGCAGTGCTCACAGTGACGTCAACATCTGACAGCTATCAA
GAAAAATACGGAGGAAACATCAACACCGGGAACATTGGGGCGGGTATTAA
CGAGCCGACACCATCTGTGGATACGATCCATATCACTGGCGATACTGTCT
CCTTCAGTTCGTCAAGGACGCGTACCGACCCTCTGTACATGACTGACCCA
AGTCCAATGTACACACAAAATACCGTGAACGCCAACCCGACTCAAGAGCC
AACCATTATCTCTGAGCTTGCCTGCAGGCCAGAGAGCAGTCATGGGAATC
CCGAAAATGATCTTGATGACAATAACATGTCAACGGAAGATAGCACTGCA
GCTAGGAATGGACAAACGAGGGATACCGTTCTGACTGAGAACCTGCCCTC
CGAGGTCACACCAAGTGGCAACACGAATGAAATTTCCGGACATACTGGTA
TGGCGCAGCCAGGTTCGGAAACAGAAACAAGGGAACCTTCCTTTTTACAA
GCTGAAAGTGATGGCATGGCGGGACCTCCTCTGCAATCTGCGGAAGAGGA
CAATGGTAATTATGATGATGATGATGACAAGCCTGTAAGAAGGGATGATG
GACATGAGGTCGGACAAACAGTCGATATGGCCTCCGACGAGGTCGATATT
GAACCATATGCTGTTGCATATATTAGCACAGACCACGTAGCATCCTCTGC
AAGTTCGGAAGCTACACAAACGAAAGAGCTCTTTCTTGACACTACCGCAT
GTAATTCCAAGCATGAAGCTAATACTTCTGACATTGTCGGGGATGATCGT
ACTTTACATAATCTTCGACGTTCCCCGAATGCCCTTAATTCAAATCCTAT
GTACGCGAAAAACGCCCTCAACCCGAATCCGATGCACGTGCCAAATGCTC
ACAAGCAAGCAGGGTGCAGGTATCGCCGGGCATGTGTTGCTGCAACAGCA
GCAGCTTTTATCTTGGTGCTGATCACTGGAGGCATTGTTGGAGTTTTCTT
TGGTATTGTCAGAAAGGATACCCAAAATGCAATGCCCACTTATGGTCCAT
CTGGGGAAGCAGTGCTCACAGTGACGTCAACATCTGACAGCTATCAAGAA
AAATACGGAGGAAACATCAACACCGGGAACATTGGGGCGGGTATTAACGA
GCCGACACCATCTGTGGATACGATCCATATCACTGGCGATACTGTCTCCT
TCAGTTCGTCAAGGACGCGTACCGACCCTCTGTACATGACTGACCCAAGT
CCAATGTACACACAAAATACCGTGAACGCCAACCCGACTCAAGAGCCAAC
CATTATCTCTGAGCTTGCCTGCAGGCCAGAGAGCAGTCATGGGAATCCCG
AAAATGATCTTGATGACAATAACATGTCAACGGAAGATAGCACTGCAGCT
AGGAATGGACAAACGAGGGATACCGTTCTGACTGAGAACCTGCCCTCCGA
GGTCACACCAAGTGGCAACACGAATGAAATTTCCGGACATACTGGTATGG
CGCAGCCAGGTTCGGAAACAGAAACAAGGGAACCTTCCTTTTTACAAGCT
GAAAGTGATGGCATGGCGGGACCTCCTCTGCAATCTGCGGAAGAGGACAA
TGGTAATTATGATGATGATGATGACAAGCCTGTAAGAAGGGATGATGGAC
ATGAGGTCGGACAAACAGTCGATATGGCCTCCGACGAGGTCGATATTGAA
CCATATGCTGTTGCATATATTAGCACAGACCACGTAGCATCCTCTGCAAG
TTCGGAAGCTACACAAACGAAAGAGCTCTTTCTTGACACTACCGCATGTA
ATTCCAAGCATGAAGCTAATACTTCTGACATTGTCGGGGATGATCGTACT
TTACATAATCTTCGACGTTCCCCGAATGCCCTTAATTCAAATCCTATGTA
CGCGAAAAACGCCCTCAACCCGAATCCGATGCACGTGCCAAATGCTCACA
AGCAAGCAGGGTGCAGGTATCGCCGGGCATGTGTTGCTGCAACAGCAGCA
GCTTTTATCTTGGTGCTGATCACTGGAGGCATTGTTGGAGTTTTCTTTGG
TATTGTCAGAAAGGATACCCAAAATGCAATGCCCACTTATGGTCCATCTG
GGGAAGCAGTGCTCACAGTGACGTCAACATCTGACAGCTATCAAGAAAAA
TACGGAGGAAACATCAACACCGGGAACATTGGGGCGGGTATTAACGAGCC
GACACCATCTGTGGATACGATCCATATCACTGGCGATACTGTCTCCTTCA
GTTCGTCAAGGACGCGTACCGACCCTCTGTACATG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| Sc0000214 | genome | Sc0000214:177943..180924 + |
Properties
| Property Name | Value |
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| Transcript id | BL90273_cuf0 |
| Biotype | protein_coding |
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