|
|
Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL90151_cuf2 >transcript:BL90151_cuf2-protein ID=transcript:BL90151_cuf2-protein|Name=transcript:BL90151_cuf2|organism=Branchiostoma lanceolatum|type=polypeptide|length=456bp
MERPARMENGRKTTRVPSAFLNTSGIQHVLVTILVALSLTMLYLGYEADI
SLTSNLPPVTHRKEIQDMHYGVKNVTVIQRSALPRGIYFISANSANPSSQ
FYSVWNEDAAQVARKTQGDRKKILVWNPWPPIWMPPRACPSMPQCEFTKD
RAEVADADAVIFWFRTMPPVYNRSWFPQPRPAHQHWIMRTPDCPHFTRHT
DWVSYGGVFNWTMTYRNDSDIYMPWGHITGIYNEIAKRPDTLGKHYPKRN
DKLVIWYVSNCYKHLSRFAYANELMKYIQVDVFGGCGQDYCGLGGKGRNC
FTDHLRQYKFYLAFENFKCIEYITEKFWVNGLKHDAVPVVLGAPRSDYER
FVPSNSFIHVDDFKSPRALANYLMYLSKNEDKYMQYFAWKTNPPKSLPDY
EGDWCELCKKLVHVKPTERKVYNDIDKWWRGENYEFCEPMVIVPNIRHES
VAVHYP Run BLAST on NCBI mRNA from alignment at Sc0000080:25047..29773- Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL90151_cuf2 ID=transcript:BL90151_cuf2|Name=transcript:BL90151_cuf2|organism=Branchiostoma lanceolatum|type=mRNA|length=4727bp|location=Sequence derived from alignment at Sc0000080:25047..29773- (Branchiostoma lanceolatum)
ATTACAACAAGAGTTCCGCGACCTCATATCTCCATGAACAATTCTATTTA
TGCAAATGACTTACACATTTACATAATGCATGCTTAATCATAAACACCTT
TATCTAACTTACACATGTTGCAATATTGACAGTTCTATAATTTTCCAATT
TGATGAATTTCTGTGTTTTTGGATTAATTATGCAAATCAGGAATTTATTT
GCATTATTGGTATCTGTTGATGCTCCACTTTCCATAAACTACATATGTTA
CATGTATTTGAGTCTTATAATGGAAAACACTGCAAATATAGATTTTCCTC
ATTATCTATGCAAATTAATTCCCAATTAGCATAATTTGCACTTCATTGTG
TATATCTCTGTCCAAGCTACCTGCATACTAAATATCATGGAAATCTGTTG
TTCCTTTGTTCAGTTATTGTCCCTAGAGGATTTTCACAAAAACGCCCTTG
CAGTTCCAGAGAAAGCTGCTAGGGGACCCAAACTTACACCACTTCTTTAT
TACATCACAAGCTATCTGCCACCCAAAAATCAAGACCACAGCACGTCTAG
GTCAAAAGATACAAAAATTGAAGTTCTGCTGCAGTACCAAGGTCACATAC
CAGGGGGCCCAAAATCGACCCTAACCTTCGGCTTCACAACACCCGCCCAC
ATACCAAATATCATTGTAATCCATCAAGAGGTTCTTGAGTTATGCTGACT
ACAAGAGTCCGGAAACACAAACACACACACACACACAGACACGCCAAAAA
CAATATCTCCATTTTTCATGGAGATAATTACAAAGAAGTCTGGATAACGG
ACATTTCACTCTTATTCTTTGACCGAAAGTGACAGGCTCAAAGTGACTAT
CAAAACAACGATAACTCCTACAGGTATGTGGTAAAGCACATTCATCAATT
AATCCAGTCTTCATCCAAACCAAGACCATAGAGTTCCTTTCTAGAACAAA
AACCCAGCCGGTAACTGGCCGAACCGGTTTTGTCCGGATGAATACACTCG
ACGACTCTTTAAATCGCGGCTCTGTGACAGGTGATAACGTTACACGCTCC
CATCTTCTTCCACACTGGCTTTTCCAGTCAAGACGGAAGAGCACTCACTG
TCTCTGTGGTCGTCATTTGTGCAAAGACGGTATGTTCTTAGTTTCCCTTA
CCGTGATTACTAGTGATTGACATGCTCAGATATTTCGACAAGCAAACGAT
TTATATATAAACGTTAAATCCGCATGTTGTCTAGATCTGTTTGTCATTTT
GTACATGATGAAAAGTTTGTAATTGAGCATGTTTTCCCTTTTAAACTGGC
TTCCACTTCAAATTTGATTACAGATCAGTTATGTTTGATGGTCATTGATG
TAACTCTATCGTTCTTCTTGAGTTATTCATTCATAATCTGTAGAACCTGG
CGACTTTTTAAAACATAGACTGGTTAAGACAACACCAGTTCCTTATGTTA
CATGTTTACAATATTGCAAGAACGTAGGTAGACACTTCTGAACTTATGTC
ATGTTTAAGCCAGTCATCACTATATAGGTCGCAGTTTTTCCGTCCATGTT
TCACAAAGAGTCACTACTTGTACATTTTAGAGAGGAAAAAGTGGGATTGG
TTCATCCATATTGGCCACCCACACATAGTGCAGTACCACAGCTCCCGCGA
GGTGGCGTCTTGTTTTCTGACCTACAACTTACAACTCAGCTCAAGGGTTT
GCGTTTGGCTCTGATCGATTTTATCAAGGATTTCAACGACATCCTCGCGC
GTATCCACTTTCGCCAGTTTAAAAAAAATGAAATTATGCCACTTTGTTAG
TGATGAGGATTTATATGTACAACTTATAGGTGCCCGTTGTGTAGTCTGCT
AAGTTAGTAAGTACTAAGAAGTCGGATGTTTCTGGTCTTTCGAGTTTTCG
CCCCTCTGGAGCTAGCTAATTGATAGCCTGGATGCCTGACCCCAATCTCT
CAAATATGTATCGCGTGGGTGTGTACACGATAGATACATGTGTTTTAGAG
AATGGGGGTCTGGTATCCAGGTGAACCCACGGTAAACCTGTTACACCATG
GCGCTAACCTGCCTGGGCGGACGGACATCACTCCCAGTACCGTACCAATA
CCTTGCCACTACTGGTCGTTGGCCATGAGAGAAATGGGAGTGCTTTTCTT
CTAATCATCGTTTGTATTACCGCAATCAATCGTAATGATCCGTTGTTTCT
TCTTTCAGGCATCGACTCTTCGACAACGCCGTATACATACAAGTATAGGA
CGTCATCTGTTAACGTTACCATATATCTAGTTAAAGGACATTGATTGATT
CGTGTCATCCGAAGGATCAACGACAATACGAATTCGAAGATGGAGCGGCC
GGCTCGAATGGAGAATGGGAGGAAAACTACCCGCGTACCAAGCGCCTTCC
TGAACACAAGCGGGATACAACATGTACTTGTAACGATACTTGTAGCATTG
AGTCTAACCATGCTGTATCTTGGATATGAAGCGGACATTTCATTAACCTC
GAATCTCCCCCCGGTTACTCACAGGAAGGAAATCCAAGATATGCACTATG
GAGTTAAGAATGTGACCGTTATTCAGCGTTCAGCACTCCCCAGGGGCATT
TATTTCATTTCTGCCAACTCTGCCAACCCTTCGTCACAGTTCTATTCCGT
CTGGAACGAAGATGCCGCACAGGTAGCAAGGAAAACACAAGGAGACAGGA
AGAAAATCCTTGTGTGGAACCCATGGCCCCCAATTTGGATGCCTCCGCGG
GCATGCCCATCTATGCCCCAGTGTGAATTTACTAAAGATCGTGCAGAGGT
TGCAGATGCGGATGCCGTGATCTTTTGGTTCCGGACGATGCCTCCCGTCT
ACAACAGATCCTGGTTCCCTCAGCCACGGCCTGCTCATCAGCACTGGATA
ATGCGTACCCCAGACTGCCCGCATTTCACAAGACACACCGACTGGGTCTC
ATACGGAGGCGTCTTCAACTGGACCATGACCTACAGAAACGATTCAGACA
TTTACATGCCCTGGGGTCACATTACTGGCATTTATAACGAAATTGCTAAA
CGACCAGATACTTTAGGAAAACATTACCCAAAACGAAACGATAAGCTAGT
CATATGGTATGTGAGTAATTGCTACAAACACCTGTCCCGGTTTGCCTACG
CCAATGAACTCATGAAGTACATCCAAGTGGACGTGTTTGGCGGTTGTGGA
CAGGACTACTGTGGTCTAGGTGGGAAAGGGAGGAATTGTTTTACGGACCA
TTTACGCCAGTACAAATTCTACCTGGCATTTGAAAACTTCAAATGTATAG
AATACATAACAGAGAAGTTCTGGGTTAATGGCCTTAAACATGATGCTGTA
CCGGTTGTCTTAGGTGCACCGAGGAGCGACTACGAGAGATTTGTTCCATC
TAACTCCTTTATCCACGTAGACGATTTCAAATCCCCTAGAGCGTTGGCAA
ACTACTTGATGTATCTAAGCAAGAACGAAGACAAGTATATGCAGTATTTC
GCTTGGAAAACTAACCCTCCAAAGAGCCTACCCGACTACGAAGGGGACTG
GTGTGAATTATGTAAGAAACTCGTACATGTGAAGCCCACGGAGAGAAAGG
TCTATAATGACATTGATAAGTGGTGGAGGGGTGAAAACTACGAATTTTGT
GAACCTATGGTCATAGTACCTAATATCAGGCACGAATCGGTTGCAGTGCA
TTATCCCTAACCCAGGTACCTTCACCAAGAAGGTTATGTTTTCGGTTGTG
ACGTGGAGCCGGGAGCGGCTGTGTTCTTGTAGCATCTGTAAGTTCAAGGA
CATCAAACATAAATTATGCAAATCAGGGCCACAATTGCATCTCTCAGAAA
ATGCTAGCTAGAATAGCCTTCTTTGCTATTATTTGATAAGAGTTTCATAC
TTTGGACAATTTGTGTTATTTAGACTGACAAGATCAACTGGTATGCTACA
TTTGTGAAATAATGACCTTTATATAATCAATGAGAAACATTTATAGTACG
TCAGTCATGAAGGTTAAATCATTTGGTGAAGATTTGAGGTTGTGGAACTC
GTTACTTATGAGGTTTTGCATAATCTGTAAAGAGAAAAAAATCACCCGTT
TGATACGTCTGGTCAGTGTGACAGCTTTCTAACATACAAATAAGATTGCG
ATGAATGGAACCAAGGACACTACCGTCAACACCAACTTATACACGGTTAT
TAGGTCGTAGTTGCTACTATGATGTTTATATTTGGTATTTAGCTAGTTAC
AGTTATCATTAAGATTTTTTTTTTGGCTGAATAACTTCATTAATGCCAGG
ATGTTCAAAGAAGCTTGTAGTATTAATTCAAGGCTATTTTCGTACCTGGG
TGTACTATTTTCAGCTGTAAGAAAAGCGGTATAGGGGCTCTGGTAATGAG
GAATACAGGTGCATTTCAGNGCTGTAAGAAAAGCGGTATAGGGGCTCTGG
TAATGAGGAATACAGGCGCATTTCAGTTCAGATGAAAAGTACTAGATTCA
AACGATCACCGCGGGTTCGTGCTAGCCTCCCTTGTAGACCCCGGATTCGA
GCACGAACGAGTAAGATCTTGGCAACTCATCAGAACCGAGTGGCTATCAG
AAAAGCCTGGCGGGGTTGGCAATGGAGGCAAGTATACTCTGCCATAAGGG
AACGACTGTCAGAAAGCAGAGCAGACGGAAGACAACTATAGCTATCTACC
CCTCCAACCTCTGCCTCAACTGTAACT Coding sequence (CDS) from alignment at Sc0000080:25047..29773- >transcript:BL90151_cuf2 ID=transcript:BL90151_cuf2|Name=transcript:BL90151_cuf2|organism=Branchiostoma lanceolatum|type=CDS|length=1371bp|location=Sequence derived from alignment at Sc0000080:25047..29773- (Branchiostoma lanceolatum)
ATGGAGCGGCCGGCTCGAATGGAGAATGGGAGGAAAACTACCCGCGTACC
AAGCGCCTTCCTGAACACAAGCGGGATACAACATGTACTTGTAACGATAC
TTGTAGCATTGAGTCTAACCATGCTGTATCTTGGATATGAAGCGGACATT
TCATTAACCTCGAATCTCCCCCCGGTTACTCACAGGAAGGAAATCCAAGA
TATGCACTATGGAGTTAAGAATGTGACCGTTATTCAGCGTTCAGCACTCC
CCAGGGGCATTTATTTCATTTCTGCCAACTCTGCCAACCCTTCGTCACAG
TTCTATTCCGTCTGGAACGAAGATGCCGCACAGGTAGCAAGGAAAACACA
AGGAGACAGGAAGAAAATCCTTGTGTGGAACCCATGGCCCCCAATTTGGA
TGCCTCCGCGGGCATGCCCATCTATGCCCCAGTGTGAATTTACTAAAGAT
CGTGCAGAGGTTGCAGATGCGGATGCCGTGATCTTTTGGTTCCGGACGAT
GCCTCCCGTCTACAACAGATCCTGGTTCCCTCAGCCACGGCCTGCTCATC
AGCACTGGATAATGCGTACCCCAGACTGCCCGCATTTCACAAGACACACC
GACTGGGTCTCATACGGAGGCGTCTTCAACTGGACCATGACCTACAGAAA
CGATTCAGACATTTACATGCCCTGGGGTCACATTACTGGCATTTATAACG
AAATTGCTAAACGACCAGATACTTTAGGAAAACATTACCCAAAACGAAAC
GATAAGCTAGTCATATGGTATGTGAGTAATTGCTACAAACACCTGTCCCG
GTTTGCCTACGCCAATGAACTCATGAAGTACATCCAAGTGGACGTGTTTG
GCGGTTGTGGACAGGACTACTGTGGTCTAGGTGGGAAAGGGAGGAATTGT
TTTACGGACCATTTACGCCAGTACAAATTCTACCTGGCATTTGAAAACTT
CAAATGTATAGAATACATAACAGAGAAGTTCTGGGTTAATGGCCTTAAAC
ATGATGCTGTACCGGTTGTCTTAGGTGCACCGAGGAGCGACTACGAGAGA
TTTGTTCCATCTAACTCCTTTATCCACGTAGACGATTTCAAATCCCCTAG
AGCGTTGGCAAACTACTTGATGTATCTAAGCAAGAACGAAGACAAGTATA
TGCAGTATTTCGCTTGGAAAACTAACCCTCCAAAGAGCCTACCCGACTAC
GAAGGGGACTGGTGTGAATTATGTAAGAAACTCGTACATGTGAAGCCCAC
GGAGAGAAAGGTCTATAATGACATTGATAAGTGGTGGAGGGGTGAAAACT
ACGAATTTTGTGAACCTATGGTCATAGTACCTAATATCAGGCACGAATCG
GTTGCAGTGCATTATCCCTAA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000080 | genome | Sc0000080:25047..29773 - |
Properties
| Property Name | Value |
|---|
| Transcript id | BL90151_cuf2 |
| Biotype | protein_coding |
|
