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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL90046_cuf0 >transcript:BL90046_cuf0-protein ID=transcript:BL90046_cuf0-protein|Name=transcript:BL90046_cuf0|organism=Branchiostoma lanceolatum|type=polypeptide|length=132bp
MVDTIMERNLFPFVVAGGLGLMSGSVEGDAGVIRSLTDRGVEMFVAVSLS
RQFGLRDDGVGCLFVVTSNDSAWLTVSSHLVYMAAPMWGNPPQHGALVVS
RTLNDTNRRQRWEKELQSFVQRDNQEEDGDDI Run BLAST on NCBI mRNA from alignment at Sc0000149:347738..355993+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL90046_cuf0 ID=transcript:BL90046_cuf0|Name=transcript:BL90046_cuf0|organism=Branchiostoma lanceolatum|type=mRNA|length=8256bp|location=Sequence derived from alignment at Sc0000149:347738..355993+ (Branchiostoma lanceolatum)
CGTGTAAGTTCTAACTTGTATAGTCTAAAAGATCTATGCTGTTCATTCCC
TCCCTATGACTCATCACTTACAACTCAGATATTTTGCCAATCAGGATAAC
TATCGAAAACATTTCACCAGAGTTTCCCTGTAGGTTCTGTTGCTGTATTT
GAAGCTGACAGCATCTCGACTAAACCCATACAGAGGATGGTCGACACAAT
CATGGTAAGGCACAGTTTAGTTACGCCACCTTGCGGAGTGGCAACTAGCA
CGCTGCAGATGTCAAGAACTGAAAGTTTAAATGACGTAGTTAAAACGAAA
ACAAAAACTTTTGATGCTACAGTCATATCTTGTTGATTATTGATTGCTTG
GCAATTTTGTTAAAGGTGTGTATATGTTAAGTAAGTAATACATATGTATT
TGAATAGACGTCTCTGCTTCAGCTAATTCTGTTTTCTTTCCATGTCCCAT
TATCATTAAGTTCAATACACGCTCTAAACTTTTCTCATAACAGAAATAAG
TTTTATTTTATTTTGATTTTCTATTTCAAAGGAAAGAAACCTGTTCCCGT
TCGTGGTAGCGGGCGGCCTGGGCCTCATGTCGGGGTCGGTGGAGGGAGAC
GCCGGTGTGATCCGGTCCCTAACGGACAGGGGAGTGGAGATGTTTGTGGC
CGTGTCGCTCTCCAGGCAGTTTGGGCTCCGTGGTAAGTAGTGGTAATAGG
GGTAACATTGCAACCGGCATACCATTGTGGTGCTGCAAAGGGACTTTATA
TTGCAGTCATACAGGTTTGGCATTGTCAGGAGGCCTCCAAATCTGATGAG
CGAGAGGATGAAAAAGAAAACATCTTTCTATGAGATAATTTGAGGAAGGA
CACAAATTGTTTGCGGTAAATTGGTGCATGTAACGTTACCTGAATTGTTG
TTTATTCGTTGAAAAATTGAAATTCCCCATTTTTCTAACCAGCCAGAACT
AATGCCTGCGTCGGGGTGATCCATAAACTTAAGATTGAACTAGCTAGTTA
CAGGTGTGCCACATGGCAACTACCTTAAGGGACCAACCATTTGTGACTAC
GCCCCCGCATCCTATCATCGCACCTCATCTCACATTGCGCATATGATTCA
CATAATTTGGAATATACAAACCACAGATTCACTACTCTTACAACTCACAA
CTGTCACAATGCACCTTTCCTATTTGTTACACCTGATTGGCCGTGCAGTT
ATAGAGCAATGACGATACGAAAGATGAAAATATTCTTCAGTATGAACTCC
GAAATAATTGGTACATGGTGATGATAAGTGTCAGTGATCGGCTATATGTA
TTATTACGGAGGTTATCGGTTTTCGATGTGTCTGTCTGTTTGTCCGTCTG
TTTGTGTTTCCAGATATTTTGCCAGCATTAAATTAAAAAGCTAGGCATGG
ATATAGACGTCACTAACGATGTATGGCAGGTGGGTAATTCTTGGGAATAC
AAGGGTCAAGATCGATTAAAAACCTGCTGGCGACTTTGCCTGGTATTGCA
GGAGCACTTCCTGTTTTTGTATTCCTTGTCCTGGACATGCTGTGGTCTTG
ATATTTTGAGACAGTTAGCTCAGGAAAACGTGGTGAAGGTTCGAATTCGA
GCCCTCTAGTAGTGTGTTATGGAACTGCAGGGACGTTTTTGTTTAAAACG
TTTAAAGAGGATATCTTGAAAAAGGAACGACGGATTTTCAGGATTTGGGG
CATGTACAGAAATGCACAATTAGGTGCAAAATGTATTTGCAGGATTAATG
ATGAAATGATAACTGGAATTCTGCCAAATTATAAAACTTCCACATATACA
ACGCATGTCACTTGGGTAGAGAGGACCTTCAATTGAAAGAGATTATACTA
ATTACAACCTTATTTGTATCAATGAAACAAGATAAAACAAGAAATGTACA
AAATCTCTAAATGTCGTGTCGTTTATAGCTGTGATTTATTTGGCCATGTT
GTCCGCCAGAACTAGTGTGCTGGTTTGGGGATGGGTAGAGGTGTCATTTA
TTTTTCTGTAATACTTTGTGTAACAGTTATAACTTTTTCTTTCTTTATAT
TGCATTGGTTTGCTTCAATGAATTATTCCCTATCTTTTCTATGCTTTTGT
ACAGAGTGAGTATTTGTAGGAAGAAATGGATTCATTCATAAGCGTCACAA
TCATTCCTCACGCTCACTCGCTCAGACCTACAAAGCTGTAGAGAGGTGTC
TGTTTGGGGTTGTGGCAGGCTGTGGGGATATCATAACTGTTTTATTAAAG
TCTGTGTGAACTAATTGAATCAAGCGGTCTTCAGATAAAATTACTGAATG
GATGATATCAATCCATTTGATAAACCTTGCCACTAGTCATGATACATGTA
AATGTAAAATTTGTAACCTGCAAGTTGATGATCTATAAACAGGACTGGCA
GTCAGATCGTCCGTATAACATTATTTTCCAGACGACGGTGTCGGGTGTCT
GTTTGTGGTGACGTCAGACGACAGTGCCTGGCTTACTGTGTCCAGTCATT
TGGTCTACATGGCTGCTCCAATGTGGGGAAACCCTCCCCAACATGGCGCC
CTTGTAGTGTCAAGGACACTGAATGACACAAACANTTTATGGAATTGGAA
GGCAAGACCCTGTTGTAGCACTAGGTAACATAGAACAGAAAAGAAAGGTC
CCATTTTTCAAAATTAGATTTTTGTTGTTGTTGTTGTGCATTTCATTCTA
CAGTAAGGACCACAGATTTGGCATCCTGGACTCCTGAAGTCGTCAAGAAC
GTTTTGAGGGAAATCTCGTCCGACGAAGCTGTCAATCACGAGTACATCCC
AGTCCCCGGCCTACCAGAGTTTACCTCGGCTGCGACATGTCTGGTCTTCG
GCGATAACTGTGGTGTCGTTTTTGAGAATAAGGTGTCAAGACATTGAGAA
GACTCTCTTGGATAATTTGTACCTACCAGTTAGAAATAATCGAGATGGAA
AATATGATACCACAGAACTACTAAGTCAGAAAAACGATGCGATATTAGAA
TCGCTGTCAAATATCAGATTTCTGAAGCAGAATACCGCCATACATATCTG
TAAAATGTTTTTATGACAGAAATATAGACCATATCATGTTTCTCTTCAAT
GAAATAGGATACGTCACTAGCACATCCAGTGACAAAGTAAAATGTAGAGT
TTTCTTCGGTTTCGTAATGCGACTACTTAAAAACTAAAGTGATCAGTGGT
TTAATGGTATCCCACTTTTCAGATTGGTTGTTTCCAGACTATAGGACAGA
CTGGTGCTGTCCGGCTGGGGGCGGACTTCTTACACAGACAGCTCCGACTG
AACACTGTGGTGTTACCCAGGGCGTCAGCAGGTACGGAGTCTATAGTCGG
GGTCTGTCGCAAACATTTGTAATATCTAATATGCAGTCTCTGTAAGATAT
AAGCTTGAAACAATGGTAAGAAGCGAGGAGAACAATGACGACTAATGAGG
TGCTTTGCATGTGCAGGCATCACGGACCGGATAGCGTAGCGACCTACTTA
GAACAAGGCAATCAGAGATTCACTATCCTTTTTGTTAACAAGTAACTCAC
CAACAATTCAAATCGATGCTTCACTATCTTGATCGTATGTGTTTGTTTTG
TTTTCTGCAGATTTATATGATGGCGTGTTTAAAGCGGCGTCCTTCGGTGA
TGTCCGGTATTACAACAACAGTCACGAACTCAACTCGTCAGGCGCAAGTG
ACTTGATTGAGACACTGAAGGTAACAACATGTGAATCTAGTGGTCTAACT
CGTAGTAGATGTAGCAATGGTGAGAATCTTAAGAGTAATTGTCAAATTTT
GACATGTAGAAAAGTTTCCATGGTCAGCAATAAACTCATTTGCTCTTTTT
CGTAAGCTGGACGTGTAAGTTCTAACTTATATAGTTTAAAAGATCTATGC
TGTTCTTTCCCTCCCTATGACTCATCACTTACAACTCAGATATTTTGCCA
ATCAGGATAACTATCGAAAACATTTCGCCAGAGTTTCCCTGTAGGTTCTG
TTGCCGTATTTGAAGCTGACAGCATCTCGACTAAACCTATACAGAGGATG
GTCGACATAATCATGGTAAGGCACAGTTTAGTTACGCCACCTTGCGGAGT
GGCAACTAGCACGGTGCAGATGTCAAGAATTGAAAGTCTAAATGACGTAA
TGAAAACGACAACAAAAAACTTTTGCTGCTACAGTCATATCTTTTTGATT
GCTTGACAGTTTTGTTAAATGCGTGTATATGTAAAGTAAGTAAGTGTATA
TTATGTATTTGAATAGACGTCTCTGCTTCAGCTAATTCTGTTTTCTTTCC
ATGTCCCATTATCATTAAGTTCGATGCACGCTGTAAACTTTTCTCATAAC
AGAAATAAGTTTTATTTTATTTTGATTTTTTCAAAGGAAAGAAACCTGTT
CCCGTTCGTGCTAGCGGGCGGCCTGGGCCTCATGTCGGGGTCGGTGGAGG
GAGACGCCGGTGTGATCCGGTCCCTAACGGACAGGGGAGTGGAGATGTTT
GTGGCCGTGTCGCTCTCCAAGCAGTTTGGGCTCCGCGGTAAGTAGTGGAA
GTAGGAGTAACATTGCAACCGGTATACCAATGTGTTGCTGCAAAGGGACT
TTATCTTGCAGTCATACAGGTTTGGCATTGTCAGGAGGCTCCCAAATCTG
ACGAGCGAGAGGATAAAAAAGAAAGTATCTTTCTACGAGATTATTTGAGG
AAGGACACAAAGTGTTTGCGGTAAATTGGTACCTGAATTGTACCTGAATT
GTCGTCTATTCGTTGAAAAATGAGATTCCCCCTTTTCCTAACCAGCCAGA
ACTAATGCCTGCGTCGGAGTGATAAACTTAAGATTGAACTGGCTAGTTCC
AGGTGTGCCACATGGCAACTACCTTAAGGGACCAACCATTTGTGACTACG
CTCCCGTATCTTATCATCGCACCACATTACTGTTACCAATTTTTCTTTCT
TATTCGTTCTTGAAGTAAATTCTTAATATAAGAAAATTTGTCCACGAGTT
AAGAAATACGAGAAAAACTAAAAAAGCAAGAAAAAATATTCTGCTAGTTT
ATTGCCCATGTTATGCCGTAATGTTATCTTACAATTGAAATATTATAAAT
ATTACAAAATATAGAACTTTCACATATACAACGCATGTCACTTGGGTAGA
GAGGACCTTCAATTGAAAGAGATTATACTAATTACGACCTTATTTGTATC
AATGAAACAAGATAAAACAAAAATTTACAAAATCTCAAAATGTCGTGTCG
TTATAGCTGTGATTTATTTGGCCATGTTGTCCGCCAGAACTAGTGTGCTG
GTTTGGGGATGGGTAGAGGTGTCATTCATTTCTCTGTAATACTTTGTGTA
ACAGTTATAAGTTTTTCTTTCTTTATATTGCATTGGTTTGCTTGGTTTGA
TTTCTTCCCAAAGCACCCTTTTCTATCATGCGTCAAACAGTGTATGCTTT
TGTACAGAGTGAGTATTTGTAGGAAGAAATTGATTTATTCATAAGCGTCA
CAATCATTCCTCACGCTCACTCGCTCAGACCTAAAAAGCTGTAGAGAGGT
GCCTGTTGGGGGTTGTGGCAGGCTGTGGGGATATCATAACTGTTTTATTA
AAGTCTGTGTGAACCAATTGAATCAAGCGGTCTTCAGATAAAAGTACTGA
ATGGATGATATCAATCCATTTGATAAACCTTGCCACTAGTGTATGATACA
TGTAAATGTAAAATTTGTAACCTGCAAGTTGATGACCTATAAACAGGACA
GACAGTCAGATCGCCCGTATAACATTATTTTCCAGACGACGGTGTCGGGT
GTCTGTTTGTGGTGACGTCAAACGACAGTGCCTGGCTTACTGTGTCCAGT
CATTTGGTCTACATGGCTGCTCCAATGTGGGGAAACCCTCCCCAACATGG
CGCCCTTGTAGTATCAAGGACACTGAATGACACAAACAGGAGACAGAGAT
GGTAACTTTTACATGGATCTTTTTCTCTGAAACTTTCACCATAAAAAAAC
GGCATCACTATATTTCAAGTTGTGAAGGAATGACTATTGTCCTTTTAGCT
TAAGTGGGTGAGCTTGGACAGAGGAAGCAGAGTTAGCTTTTGTGTTAACC
GCTGTTCCTGTAGTTGATAAACCACGAGAATAGTTTTCCATAAATGATAT
AACTACACTTTATTTTCTAGGGAGAAGGAGTTGCAGTCTTTTGTCCAACG
CGACAACCAGGAAGAAGACGGTGACGATATTTGACATTCCGAGAGGCCAG
AAATCATACGATGTCGAGTAATGTTGCCCCTTGAAGTTAGTTACGCTTCA
AGGGGGGAAACATAGATGGATAAATAGGAAAGCTACTATTGGTTGTGTTC
CCATATTATTGACGAATAGGTAACTTACTTTATTTTGTCATTACTATAAG
TAGTTATTTGTATATACGTAGGTGTACAATGTGTAAGCGGAGTACTGCGG
ACCTAGCAGTATATGAGTGTGTCGAAAAGATAAAAATAAAGGTTTCCCTT
TTCCAGAAAATGTGAAATGTCTAATAAAACACAGGTAGTCCTGTACACAC
TTACGTAATCCGTCTCAACAAGTGACGTTATTTGATATGAAACACGGCAA
CGTGTTAAATCACAACGAAGCTATCACTGGTTCTCAGACGTATTTGCAAT
TCATTATGACAAAAATGTTGCAACAACGATGGGAAATAATCTGCGAGTTT
TCTTCTTTCATGATGATGTCGAGTAGGACCAATTTCAAGCGGTTTGTATA
ATTCATGTCGAGCTAGAATGTTTCCATGAAGATTACATGTATAAATGTAC
GCAAACACACCTACGTTTATGATTATGTAAATACCAAAAGGGCGTATAAC
CGTCTTGTTTTGTTTTGTGAGGGGGCATTGTTGTATTGAATTTTATTAAC
TTGAGGGATTCTTTTTACTAAAGAGCAAATGTTCATGATAAACTGGTATT
AAACGGACAAAGAAAACTAAGCGAGTCATTGTATTAAGAAGCTGTTGAAA
AATTATCGCTTATATCTCTTTTAGAGCAAAGTGGAGCAATGGAAATTTGC
TTAGTGGATATACATATCAAATTGACGGTTTCTTGGGGGGGGGTGCATTC
ATATTGTTTGGCATACTCATGGCCTGTATTGTATACGTGTGTGTATACGT
GGATGTTTTTCTCATTTTTTGGCAATACATCATGGCTCAATTCAATTCTT
TATTGTGGTTGCACATGTTGCACAAGAACCATTCTCTCAAGATGTGTTGT
GGATTCTTAAACGAGATTGAAACACGTGATCTTTGGCTTAAAGTACTGTA
CATTTTCATTGGATGGACTTTAATTTCTACCTTTAGTGGTGCGCAAATGG
AGACCAGAGATTACACCGTGATTCGAACCCGCGATCTTGTGATCTAGAAA
CACCACGCACATTGCCATGCCGAGTGATTATCCCATTCCAGCTGTTCTTG
AGGGGCTGTCAGTGTATTAAGACAAATGATCAAACTGTCAGTGCGCTAGC
TCTATACAAATATATTCAAAGACTTGTAATCACCGACAAGCCATTATTTC
CTTCAGGATGTACATGTTCTTTCTTGGTTTCGTTACGCGCACCATGTACA
GATCTCCGACACAAGAAGGCGTGCTAATTGTCTGCAGCGCTGCCGTTTGG
TGAGAGGTTGCCATGGAAACACAGGATGCGTTCGTTACGTCAATCGATCT
GGTTACTCCATGTGATGTAAGGAAATATTCATGGCGACAATGCACCGTTT
GCTATTCTGTTGTTCTGACAATATTTTTGGTATCTTTTTATTGGAAAACA
CATGTAGATATAGGAAAACCTGTGTTGGAACCAATGTTAACGAACAAAAA
TATAATGCAAGATAAATTTTGTCTAAGACAGGAGACAAAAAGTATACTCA
AGGATCCAAGTGACTGAGGAAACTAGAAGTAGCTGTCCACTTCCATTCGC
CCAAGAAATGAAATGGGGGCACATGAAAAAATAACATGACGTCTACTTGA
TATATCTTACTTGTGTCATTAGTGCAATAACCGTAGAGGCGTTTTGCTAA
TGAAAGACTCTTTGTTCGAGCGCTGCTACGCTTTTTTTGACGTTATGACG
TAGGCCATTGTGTTACCATAGCAACTACAATGGATAGCAAAGTAACGCCT
TCTTTAGAGTTCCTGAAAATGCTTTTTAGCAGAGCAGTGTTATCGTTATT
TTGTAGATTTTAATTGGACTAGGAAAATGTAGCATTTGTTTGGAAATAAA
TCAATT Coding sequence (CDS) from alignment at Sc0000149:347738..355993+ >transcript:BL90046_cuf0 ID=transcript:BL90046_cuf0|Name=transcript:BL90046_cuf0|organism=Branchiostoma lanceolatum|type=CDS|length=1596bp|location=Sequence derived from alignment at Sc0000149:347738..355993+ (Branchiostoma lanceolatum)
ATGGTCGACACAATCATGGAAAGAAACCTGTTCCCGTTCGTGGTAGCGGG
CGGCCTGGGCCTCATGTCGGGGTCGGTGGAGGGAGACGCCGGTGTGATCC
GGTCCCTAACGGACAGGGGAGTGGAGATGTTTGTGGCCGTGTCGCTCTCC
AGGCAGTTTGGGCTCCGTGACGACGGTGTCGGGTGTCTGTTTGTGGTGAC
GTCAAACGACAGTGCCTGGCTTACTGTGTCCAGTCATTTGGTCTACATGG
CTGCTCCAATGTGGGGAAACCCTCCCCAACATGGCGCCCTTGTAGTATCA
AGGACACTGAATGACACAAACAGGAGACAGAGATGGGAGAAGGAGTTGCA
GTCTTTTGTCCAACGCGACAACCAGGAAGAAGACGGTGACGATATTTGAA
TGGTCGACACAATCATGGAAAGAAACCTGTTCCCGTTCGTGGTAGCGGGC
GGCCTGGGCCTCATGTCGGGGTCGGTGGAGGGAGACGCCGGTGTGATCCG
GTCCCTAACGGACAGGGGAGTGGAGATGTTTGTGGCCGTGTCGCTCTCCA
GGCAGTTTGGGCTCCGTGACGACGGTGTCGGGTGTCTGTTTGTGGTGACG
TCAAACGACAGTGCCTGGCTTACTGTGTCCAGTCATTTGGTCTACATGGC
TGCTCCAATGTGGGGAAACCCTCCCCAACATGGCGCCCTTGTAGTATCAA
GGACACTGAATGACACAAACAGGAGACAGAGATGGGAGAAGGAGTTGCAG
TCTTTTGTCCAACGCGACAACCAGGAAGAAGACGGTGACGATATTTGAAT
GGTCGACACAATCATGGAAAGAAACCTGTTCCCGTTCGTGGTAGCGGGCG
GCCTGGGCCTCATGTCGGGGTCGGTGGAGGGAGACGCCGGTGTGATCCGG
TCCCTAACGGACAGGGGAGTGGAGATGTTTGTGGCCGTGTCGCTCTCCAG
GCAGTTTGGGCTCCGTGACGACGGTGTCGGGTGTCTGTTTGTGGTGACGT
CAAACGACAGTGCCTGGCTTACTGTGTCCAGTCATTTGGTCTACATGGCT
GCTCCAATGTGGGGAAACCCTCCCCAACATGGCGCCCTTGTAGTATCAAG
GACACTGAATGACACAAACAGGAGACAGAGATGGGAGAAGGAGTTGCAGT
CTTTTGTCCAACGCGACAACCAGGAAGAAGACGGTGACGATATTTGAATG
GTCGACACAATCATGGAAAGAAACCTGTTCCCGTTCGTGGTAGCGGGCGG
CCTGGGCCTCATGTCGGGGTCGGTGGAGGGAGACGCCGGTGTGATCCGGT
CCCTAACGGACAGGGGAGTGGAGATGTTTGTGGCCGTGTCGCTCTCCAGG
CAGTTTGGGCTCCGTGACGACGGTGTCGGGTGTCTGTTTGTGGTGACGTC
AAACGACAGTGCCTGGCTTACTGTGTCCAGTCATTTGGTCTACATGGCTG
CTCCAATGTGGGGAAACCCTCCCCAACATGGCGCCCTTGTAGTATCAAGG
ACACTGAATGACACAAACAGGAGACAGAGATGGGAGAAGGAGTTGCAGTC
TTTTGTCCAACGCGACAACCAGGAAGAAGACGGTGACGATATTTGA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000149 | genome | Sc0000149:347738..355993 + |
Properties
| Property Name | Value |
|---|
| Transcript id | BL90046_cuf0 |
| Biotype | protein_coding |
|
