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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL87851_cuf0 >transcript:BL87851_cuf0-protein ID=transcript:BL87851_cuf0-protein|Name=transcript:BL87851_cuf0|organism=Branchiostoma lanceolatum|type=polypeptide|length=853bp
MDKSSGHYFRPRVGQRSGRQTNSREDQTPETGKQQDKGKQITCKKTYSVN
CTSFDQKTLSNPPYNCDQCDYSTCSKISLKQHMSKHSIEKPYLCETCGFR
TAYQNSLSRHKRKHTGKKPHRCEQCNFCTARRDYMDQHMLKHSSEKPYKC
DQCDYSAVRKDYLDSHLIKHLGEKPFMCGECGYRTGYRTHLSRHMKKHED
KKPYSCDQCDFSTCWQISLRRHMAKHTGEKPYKCDQCDYSSVRKVYFDSH
MANHTGKKPYMCGICGYATTFRSHLSRHMKKHTGEKTYRCEQCNFGTGSK
RHLDRHMGKHEGEKPYKCNQCAFSSELKDNLVQHMVTHIGKKEFGNKSAC
STQVAQDRSKQKGGKHFSCDQCDFSTCAKSNLKQHMGKHSTEKSYLCGEC
RFRTAFRSSLSRHMRKHTGKKPHRCEHCGFRTARRDYMDEHMLKHSGEKP
FKCDQCDYSSVRKMYLDRHLVREHTGEKPYVCEVCGYGTAYKTRLSRHMR
KHRGEKPYKCEQCNFCTVSKSHLDQHMVKHKPIGEKPYKCSQCDFSTEQK
DNLEQHMFDDNHDKILTIEKPFVCEKCGFRTAFQSSLLRHRRKHTGEKPH
RCEHCNFRTARRDYMDEHMLKHSDEKPFKCDQCDYSTARKVSLDKHLAKH
TGEKPFMCGECGYRTAYRTHLSQHMWKHTSAKPYNCDQCDFSTCWKICLE
RHVAKHTGEKPYKCDQCDYSAIQKVCLDKHLVKHTGVKPFVCGICGYGTA
HKPHLSRHMRKHTGEKPYRCDQCDFSTSWKVNLDQHMGKHTGEKPFVCGE
CGYKTAYRYLLLRHLRKHTGAKPYKCDHCNYATGRKDYLNQHIMRHASEK
PSE Run BLAST on NCBI mRNA from alignment at Sc0000221:254115..257859- Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL87851_cuf0 ID=transcript:BL87851_cuf0|Name=transcript:BL87851_cuf0|organism=Branchiostoma lanceolatum|type=mRNA|length=3745bp|location=Sequence derived from alignment at Sc0000221:254115..257859- (Branchiostoma lanceolatum)
GGATCATCAGGTTTATCAAGTTTTGCGAACTTTAACCCCCATTTTTCGGC
AGCCCACCATTTTGTTAGCTGGTTCATGTTACTGATGTGAACGGGGCTTG
CAAAAACGTCAAAAGTCGGATCGATTAGGGACTAACGTTATCACCGGCCA
AAAGGTAAGACCTCTTGTTACTGCAAGGACTGGTTTATAAACTTCAATTG
GGAAGTCTGACAACTGTTAAAACGCAGGAACAATCGAACAATCATGGTTT
AGTGTTGGCAGGCCAGGGTCATGAGGTGTTTATAATCCACACGATTATCA
AAGGCTGTAAGGTACATTCTGATTGGTTGTATTCAATTGCTCCTAATTGG
TTGTTCCTAACAATGGTGACCAAAATATTCTTATTGACATTCTGTCAAAA
TATTTATAGCCTGGCCTTATGCAAATCAAGGACATTATATTACATCCTAT
ATCAATGTCCTTGGGTAAATAGCTTTAGGGCAAGGGGTACATAGTGAACT
GATACTAGCCCAAAGTCAAATGATAACGTTATATGCACATATACTCATGA
AATATAAACATAGAGGAAATGGTGCAGACTTTGCTACAGATACAATGTAC
TGTGTATTCACCATCCCCATAAAGATGTCAATTTTACTAAGGGCAAACCT
GTACCAAAAGCTTTTGGTACAGGTTGGCCCATTTGATACTATCTTGCCTT
GCCACCGATAGATCTACTTGGAGATTTCATTTTGTCACTAGTCACTGAGA
GCAGGAAATTGTTTCCTGTCATGCCTGGTCAACATTTCAATTTTCTATAC
TTCCTATTTTTGATTAGGTATGGACAAGTCATCTGGACATTATTTTAGAC
CAAGGGTTGGACAACGGTCAGGGAGACAGACAAATAGCAGAGAGGACCAG
ACACCAGAAACGGGAAAGCAGCAGGACAAGGGAAAACAAATCACATGCAA
GAAAACGTACAGTGTAAACTGTACTAGTTTTGACCAAAAAACCTTGTCAA
ATCCACCTTACAACTGTGATCAATGTGACTATTCTACATGTTCAAAAATC
AGCTTAAAACAACACATGAGTAAACACAGCATTGAGAAACCTTACTTGTG
TGAAACGTGTGGATTCAGGACAGCCTACCAAAATTCTCTATCCCGACACA
AGAGGAAACATACAGGTAAAAAACCTCACAGGTGTGAACAATGTAATTTT
TGTACTGCAAGGAGAGACTATATGGACCAACATATGCTCAAACATTCAAG
CGAAAAACCTTACAAGTGTGATCAGTGTGACTATTCTGCAGTGCGGAAAG
ATTACTTGGACAGTCATCTGATTAAACACTTGGGTGAAAAGCCTTTCATG
TGTGGAGAGTGTGGATACAGGACAGGTTATAGGACTCACCTATCACGACA
TATGAAAAAACATGAAGATAAGAAACCTTACAGCTGCGATCAGTGTGACT
TTTCTACCTGTTGGCAAATCAGTTTGCGGCGACACATGGCCAAACACACG
GGTGAAAAACCTTACAAGTGTGATCAGTGTGACTATTCTTCAGTACGGAA
AGTCTATTTCGACAGTCACATGGCCAACCACACTGGTAAGAAACCTTATA
TGTGTGGAATATGTGGATATGCCACAACTTTTAGGTCTCACTTATCAAGA
CATATGAAGAAACACACAGGTGAAAAAACTTACAGGTGTGAACAGTGTAA
TTTTGGTACTGGAAGTAAAAGACATTTAGACCGACATATGGGTAAACATG
AAGGTGAGAAACCTTACAAGTGCAATCAGTGTGCCTTTTCCTCAGAACTG
AAAGATAATTTAGTACAACACATGGTTACCCATATTGGTAAGAAAGAATT
TGGAAACAAATCAGCTTGCAGTACCCAAGTTGCACAAGACAGGAGTAAAC
AAAAAGGTGGAAAACATTTCAGCTGTGATCAATGTGACTTTTCTACCTGT
GCTAAAAGCAACTTAAAGCAACACATGGGTAAACACAGCACTGAGAAATC
TTACTTGTGTGGAGAGTGCAGGTTCAGGACAGCTTTTCGGTCTTCTCTAT
CCAGACACATGAGGAAGCATACAGGTAAAAAACCTCACAGGTGTGAACAT
TGTGGTTTTCGTACTGCAAGGAGAGACTATATGGACGAACATATGCTCAA
ACATTCAGGTGAAAAACCTTTTAAATGTGATCAGTGCGACTATTCTTCAG
TACGAAAAATGTATTTGGACAGACACCTGGTTCGTGAACACACTGGTGAG
AAACCTTATGTGTGTGAAGTGTGCGGATATGGGACAGCTTACAAGACTCG
TCTGTCACGACATATGAGGAAACACAGAGGTGAAAAACCTTACAAGTGTG
AACAGTGTAATTTTTGCACTGTGAGTAAAAGCCATTTAGACCAGCACATG
GTTAAACACAAACCTATAGGTGAAAAACCTTACAAGTGCAGTCAGTGTGA
CTTTTCCACAGAGCAGAAAGACAATTTAGAACAACACATGTTTGACGACA
ATCATGATAAGATTTTAACCATTGAGAAACCTTTCGTGTGTGAAAAGTGT
GGGTTCAGGACAGCTTTCCAGTCTTCTTTATTGCGGCACAGGAGGAAACA
TACGGGTGAAAAACCTCACAGGTGTGAACATTGTAACTTTCGTACTGCAA
GGAGAGACTATATGGACGAACATATGCTCAAACATTCAGATGAAAAACCT
TTCAAGTGTGATCAGTGCGACTATTCTACAGCACGGAAAGTCTCTTTGGA
CAAACACCTGGCTAAACACACTGGTGAGAAACCTTTCATGTGTGGAGAGT
GTGGATACAGGACAGCTTATAGGACTCACCTATCACAACATATGTGGAAA
CATACAAGTGCAAAACCTTACAACTGCGATCAGTGTGACTTTTCTACCTG
TTGGAAAATCTGTTTGGAGCGACACGTGGCTAAACACACGGGTGAAAAAC
CTTACAAATGTGATCAGTGTGACTATTCTGCAATACAAAAAGTCTGTTTG
GACAAACACCTGGTTAAACACACTGGTGTGAAACCTTTCGTGTGTGGAAT
ATGTGGATATGGGACAGCACATAAGCCTCACCTATCACGACATATGAGGA
AACACACAGGTGAAAAACCTTACAGGTGTGATCAGTGTGATTTCTCTACC
AGTTGGAAGGTAAATTTAGACCAACACATGGGTAAACACACGGGTGAGAA
ACCTTTCGTGTGTGGAGAGTGTGGGTACAAGACAGCTTATAGATATCTTC
TGTTACGTCATTTAAGGAAACATACGGGTGCAAAACCTTACAAGTGTGAT
CACTGTAACTACGCTACGGGACGGAAAGACTACTTGAACCAGCACATAAT
GAGACATGCCAGTGAGAAACCTAGTGAATGATTAGTCTTTTCTGCAGCAC
CTGAAGATGATTGAGACTGGCCATTGGAGAGAGACTTGGCTTTTAACACA
CATGGCAAAAACCTGTGTGCAGTGGTCCATCATAGAAAAGACCAGATGGT
GGAGGTGTTAAGTTTAATTCAAGACAAGAAAAGGCAGACATATAAACATT
GTAACGTTATAACTTTACACATGGTATATTTGTACATGTGCTGTTTATTT
GGGGCTATGGTCTCATCATATACATTTTAAGCATCCTTCTGAATAAAGAA
CTTGAACTTGTTCCATAGTAATTGTGGTTAATGCTACTTTAGAGCACAAG
CCTACAACCACTATACACTGTATTAAAGTGTACTGCATATTACAT Coding sequence (CDS) from alignment at Sc0000221:254115..257859- >transcript:BL87851_cuf0 ID=transcript:BL87851_cuf0|Name=transcript:BL87851_cuf0|organism=Branchiostoma lanceolatum|type=CDS|length=2562bp|location=Sequence derived from alignment at Sc0000221:254115..257859- (Branchiostoma lanceolatum)
ATGGACAAGTCATCTGGACATTATTTTAGACCAAGGGTTGGACAACGGTC
AGGGAGACAGACAAATAGCAGAGAGGACCAGACACCAGAAACGGGAAAGC
AGCAGGACAAGGGAAAACAAATCACATGCAAGAAAACGTACAGTGTAAAC
TGTACTAGTTTTGACCAAAAAACCTTGTCAAATCCACCTTACAACTGTGA
TCAATGTGACTATTCTACATGTTCAAAAATCAGCTTAAAACAACACATGA
GTAAACACAGCATTGAGAAACCTTACTTGTGTGAAACGTGTGGATTCAGG
ACAGCCTACCAAAATTCTCTATCCCGACACAAGAGGAAACATACAGGTAA
AAAACCTCACAGGTGTGAACAATGTAATTTTTGTACTGCAAGGAGAGACT
ATATGGACCAACATATGCTCAAACATTCAAGCGAAAAACCTTACAAGTGT
GATCAGTGTGACTATTCTGCAGTGCGGAAAGATTACTTGGACAGTCATCT
GATTAAACACTTGGGTGAAAAGCCTTTCATGTGTGGAGAGTGTGGATACA
GGACAGGTTATAGGACTCACCTATCACGACATATGAAAAAACATGAAGAT
AAGAAACCTTACAGCTGCGATCAGTGTGACTTTTCTACCTGTTGGCAAAT
CAGTTTGCGGCGACACATGGCCAAACACACGGGTGAAAAACCTTACAAGT
GTGATCAGTGTGACTATTCTTCAGTACGGAAAGTCTATTTCGACAGTCAC
ATGGCCAACCACACTGGTAAGAAACCTTATATGTGTGGAATATGTGGATA
TGCCACAACTTTTAGGTCTCACTTATCAAGACATATGAAGAAACACACAG
GTGAAAAAACTTACAGGTGTGAACAGTGTAATTTTGGTACTGGAAGTAAA
AGACATTTAGACCGACATATGGGTAAACATGAAGGTGAGAAACCTTACAA
GTGCAATCAGTGTGCCTTTTCCTCAGAACTGAAAGATAATTTAGTACAAC
ACATGGTTACCCATATTGGTAAGAAAGAATTTGGAAACAAATCAGCTTGC
AGTACCCAAGTTGCACAAGACAGGAGTAAACAAAAAGGTGGAAAACATTT
CAGCTGTGATCAATGTGACTTTTCTACCTGTGCTAAAAGCAACTTAAAGC
AACACATGGGTAAACACAGCACTGAGAAATCTTACTTGTGTGGAGAGTGC
AGGTTCAGGACAGCTTTTCGGTCTTCTCTATCCAGACACATGAGGAAGCA
TACAGGTAAAAAACCTCACAGGTGTGAACATTGTGGTTTTCGTACTGCAA
GGAGAGACTATATGGACGAACATATGCTCAAACATTCAGGTGAAAAACCT
TTTAAATGTGATCAGTGCGACTATTCTTCAGTACGAAAAATGTATTTGGA
CAGACACCTGGTTCGTGAACACACTGGTGAGAAACCTTATGTGTGTGAAG
TGTGCGGATATGGGACAGCTTACAAGACTCGTCTGTCACGACATATGAGG
AAACACAGAGGTGAAAAACCTTACAAGTGTGAACAGTGTAATTTTTGCAC
TGTGAGTAAAAGCCATTTAGACCAGCACATGGTTAAACACAAACCTATAG
GTGAAAAACCTTACAAGTGCAGTCAGTGTGACTTTTCCACAGAGCAGAAA
GACAATTTAGAACAACACATGTTTGACGACAATCATGATAAGATTTTAAC
CATTGAGAAACCTTTCGTGTGTGAAAAGTGTGGGTTCAGGACAGCTTTCC
AGTCTTCTTTATTGCGGCACAGGAGGAAACATACGGGTGAAAAACCTCAC
AGGTGTGAACATTGTAACTTTCGTACTGCAAGGAGAGACTATATGGACGA
ACATATGCTCAAACATTCAGATGAAAAACCTTTCAAGTGTGATCAGTGCG
ACTATTCTACAGCACGGAAAGTCTCTTTGGACAAACACCTGGCTAAACAC
ACTGGTGAGAAACCTTTCATGTGTGGAGAGTGTGGATACAGGACAGCTTA
TAGGACTCACCTATCACAACATATGTGGAAACATACAAGTGCAAAACCTT
ACAACTGCGATCAGTGTGACTTTTCTACCTGTTGGAAAATCTGTTTGGAG
CGACACGTGGCTAAACACACGGGTGAAAAACCTTACAAATGTGATCAGTG
TGACTATTCTGCAATACAAAAAGTCTGTTTGGACAAACACCTGGTTAAAC
ACACTGGTGTGAAACCTTTCGTGTGTGGAATATGTGGATATGGGACAGCA
CATAAGCCTCACCTATCACGACATATGAGGAAACACACAGGTGAAAAACC
TTACAGGTGTGATCAGTGTGATTTCTCTACCAGTTGGAAGGTAAATTTAG
ACCAACACATGGGTAAACACACGGGTGAGAAACCTTTCGTGTGTGGAGAG
TGTGGGTACAAGACAGCTTATAGATATCTTCTGTTACGTCATTTAAGGAA
ACATACGGGTGCAAAACCTTACAAGTGTGATCACTGTAACTACGCTACGG
GACGGAAAGACTACTTGAACCAGCACATAATGAGACATGCCAGTGAGAAA
CCTAGTGAATGA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000221 | genome | Sc0000221:254115..257859 - |
Properties
| Property Name | Value |
|---|
| Transcript id | BL87851_cuf0 |
| Biotype | protein_coding |
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