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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL87648_cuf0 >transcript:BL87648_cuf0-protein ID=transcript:BL87648_cuf0-protein|Name=transcript:BL87648_cuf0|organism=Branchiostoma lanceolatum|type=polypeptide|length=114bp
QPGSPIQDESFASMLRRSPLVQLGDVKDRIVLGKVFHVVESDLYIDFGGK
FYCVCPKPGKEPEKYHRGAKVRLRLKDLELSTRFIGGTKNTTLLEADAVL
LGLHSPLDGDRPRK Run BLAST on NCBI mRNA from alignment at Sc0000058:1196233..1203938- Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL87648_cuf0 ID=transcript:BL87648_cuf0|Name=transcript:BL87648_cuf0|organism=Branchiostoma lanceolatum|type=mRNA|length=7706bp|location=Sequence derived from alignment at Sc0000058:1196233..1203938- (Branchiostoma lanceolatum)
TCCAGCCGGGCTCTCCAATTCAGGATGAGAGTTTTGCGTCAATGTTGCGG
AGATCGCCTCTGGTCCAGCTGGGTGACGTGAAAGACAGGATCGTGCTCGG
GAAGGTCTTCCATGTGGTCGAGAGCGACCTTTATATCGACTTTGGCGGCA
AGTTCTACTGCGTATGTCCCAAACCAGGGAAGGAACCCGAGTGAGTATTA
TCTTTATCTATAACTGTACTGTGTAAATGTAGCGTAGCATATACCAAATC
TGTACATACACAACATTGAGATGTATAACTACGATACTTAAAGTTGGTAA
GTACACGCTGTGGAAGGGACTGACTGAATGGATTTACCCATCACAGGGTA
CTGTAAATGCATTTAAGTTCGCATGGTTTTTATTTCGGGACAGGAAGAAA
ATGTGCTCGTGGTAGCTCTTAGTTTGTGTTTGAGACAATTGTAGAAAAGA
AGGTATGAGGGCAAAAAATTTTGCGGTGGTTTTAAGTTGTGGTGGAGAGC
TTACCGTGAAAACTGCGAATACAAAACCACCGCAAACATTTCTGCATTTA
CAGTATCCTTATCACTCTCAAGCAGATGTTGGGGTAAGACTACTAAGAGA
GTGTAACATATTCTGACTGCCAAGATTGCCTTCCACAGTCATCAGTGATA
TGATCACACACCCCCAACATCTGCTTGGAGATTGTAAAAACAGGAAAAAT
TCTTCCACTGGTAACCGTCACAGTCTAGAGATACATTTGACCCTGTGATG
TTTTTCTATGTGCTCTTGAAAAATTTCCAGTGCTCTTGGGGGTTTCAGAG
TATTGTTGCTGTATAATGCAACTGTTGCCTAGTCTTAATTCTATGTCAAG
TTGCCAATACAATCATCTTTTTGGATTCAGAAAAATATTACCTGGAGAAC
CAGAATACTTAATTCTCCTCTTTACCTACCTACATACCTTGTCCCTTGAC
CTCCGGGTTGTTGGGGGGACAAGATACTACATGTACTTTAGGGATAGGAG
GGGGCCAAGTTTCAATGTGGACAAGTAGTATGCATATGTGTACCGTTCTT
GTATATGGTCAATAAAAGGTTTACTATGTGTGAGGAGAAGTTTTGTCTCA
AAGCTTTGTGGCTGAATCCTCCCTGGACTTCTTCCCACCACCCACTCACA
AGTCATTCTAGCAATGTTGGTTATTCCACCATTCTAACAATACCAAGAAC
CCAGAAATCTTCTTGTGTCATACAGGTAAGAATGGTAAGCAGCCAAGAAT
GTACACAAGCAGGGCTCGAAATATTTTTTTTTTGTACCAGTGCATCTAAC
ATTCAAAGTTACCTACAAAATTTAATACTTGACAACTAACATGTACCATT
CATTTTGTTTACCTGTCAGCTCAATCAATAAAGAATGTTTTCAAACTAAA
GTCTATCACCATTTTTAATCTTGATATGTGCAGTATCACTGAACAATAAT
GATTTAAGGATACTGATACTACTCTGAAAAATGCATTTGGCATCTTGAAC
CACTACTGGGTGTATGTCATCCTAGTGTCATGGGCTGGTTTTATCATGGG
CCAGTTCAGGTAAATATAAAGAATACCTGCATGGCAACAATTGTACCTAC
ACTAACAAACCTACATCAGCCAACGGATGGGTATGTCACCCCGTAAATAT
AGAATACAATACAATGTATTCGGTATCGCCCGAGGTACCGGCCCTGCCGC
AGACCAGAAGTTTAGAAAAGTTTGAAGTGTCGAACATTTTTGCAGCCCAG
GTATGATATAAGGGGCGGTATAACCCCAATATTGTGTAATCATGTCTAAT
GACAATGATGAATCTAGATATAGATTGTATTTCGAGCTCTGATGGCTGTA
GCGACTAGCAACTTTAACTTTTCATACAGCAATCCAGCCATGATTCGCGC
CATCTATGACTNACAAAGCCTCACAGACGGACTGCTGCTGTGATGATAGA
GACAGAGGCGTCTGGGTACTTCAAAGCACGAACATAAAACAACAAACATA
AACAAGCAAAAACAGGCTTCGCTACGTACTGACACAGCAGTCAAGTACGA
GCAAGTTCTACGTTAACGCAGCATGGTCAACGCAGTATCCGACATTACCC
AGCTTCAGGGTGGTCGGCAAATATCAACTCACAATCATGTCACATCTAGC
ATAGACCGTCCCGTAGGCAAATCAGTTCTATCTAGGGAAGGCATCATGCA
GTCTCAATACAAAACAATACAATATAGCGTCCACCAGGTGGATCCGTTTC
CCGTAGGCTTACGAATAGTCCACCTGGCGGGTCCGTCACCCGTAGGCTCA
CGAACATACAAGAATACAAGACATCGTGCAATAATGGTACCTAGCTACAA
GCAAACCACAAAAGTTCGAGATGTTGCACAAAGTTCAGTGGTCGGGCAGG
ATACGCGGAGAAGTACTTTTTCACATTTCGGCTAGTTTTCCCGGTAGAAG
GTCACGCTGGTTATCACGGATTGGCAGCAGCGACGGGTTCCGTCGTAGGG
GTAGTCGGGCTGGGTCGCGATCAAGTCGGCATGGTGGGTCAGGAAGACGG
CAGCGTGATCGACAGGACAGCGCTCAAGGTGTCTTGCGTACGTGGTCGGC
GGCGGATGGNTAGTCGGCAGGACAGCGCTCACGGGGTCTTGCGCACGTGG
TCGGCGGCGGGTGGCATCAGGACATCGGCGGCGTGCTCTGGCCTCAGCGA
CGGCGAGCAGGGAGTCCGGACGCCTGGGCACATGGCAGACGTGGTCGGCT
GGCAGGCTGGCTTGGTTAGAGGGCGGCATGGAGACACGTCGGGCGAGCTG
GGTCTGTGTGATACGGCGGCAGGCTGGCTAAACGGACGGCGTGGTAGCGT
GGCGGGCCGGGGCTGGCTGTCGCCGTGGCACGATGGCAGGCATATCATCG
CAGCACGGACGGGTACGGAGCTTGCTTTGGTAGCCGCTGGTCTCGATCGC
TACCGGGCGACTCGGGCGGCATGGTAGCTGGCCAAGGCTTGCGTCGAGGC
GGGTTCGGCCGTTCGAAAACGGCAACCACCGCTATGCCACCAGTGTTGAG
TAAATAAAGGCACTAGCTAGGAGAGCAAGGAATGACGTCTTCACTCAGTG
CTTGCCTGTGAGAACTGATATAGATGGACAGATGTCCATCCCCTTTATTA
CAAACCAATCAGTAACAGATGTCTGGTGTCTCTTGACCACCAGGGATAGA
CTGCTCGTCTTCCTGTTGTAATTACAGTAACATCTTGCACACTAAATGTC
TCCACGACACATATAGCTTGAAGGAAATTGTTGCTAATTCTAATGAAATT
CATTTGGATTTACTTTCAGTCATTATTATTTCCAGACAACCAAATGCACA
TATGATAAGTGTAGAATTTTCCTTTTAACTATGAAGCTAAAAAAATTCTA
ACATGCTCATTGGACGGATTGGCCAATATTAATATTTACAAGTCACAGTG
ACTGAGCAGAGGGATAATATTGAAGATAATTTAAAATAAAACTGGTGTCC
TCTAGGGTAGAATTATCGTCACACAATAGATAGTTGAAAATCTGTATTAA
CCTGTTTTTCATAGAAAAGTTTTAGTGTAAATGTCCAAAGTAACTGGATA
CCGTTTTTCACATGTTATGCATGGTGGAAGCATACTGTGGTATTATTGGT
GTGAAAGCACAAGAATTCCGATAAACTAAAGTCGGAATAAGACAATGGAA
AAAAGGTGAATTTTTTGGAATCCTTCCCAATCAGCTAAAAGCATAGGAAG
TAGAGGAGACAGAAAATGGATGGATTGCCTCTGCAACAATTTCCAAGCCA
CACCCCTTTAAACAGAACCAGATGGACTGTTCCAGTGGTCTTGACTACAG
ACCAAGCCTGAGGGTTTTGTCCCCCTTCCCAGGACCCCCCTAATCTGTGA
ACAATTATGTCTAAAGGCCATGCAAACTGGATTTTGTGGATTATGTTTAC
AAGTGCAGTTATTGGAAACGGTTTATTATGGTGAAAACAAGAGTCTTATT
AGAAATTTTCCTTCTTTAAAACAACAGGTAATGCTTGTGCCCTGATAGCA
ACGTACAGACTCACTTGTAGGCTCACTTTCAATTTGTTGAAAACCCTTAA
GTATGAAACAGTGAGGAGAAAGGAAGCATCATGTTTGAAACCATGATGAT
GCAAGACAACTTACATTTGTCTACGGTGTGATGAATTTTTACCACAAACC
TAAAACCACCAAAAATATTACATTATTTTTTTTACACAACCTACTATGTG
TACACGCATTATAACCTTTTTGTGTTTCCCGTGAATATCAGTAATATCAA
TACATACATGTACATGTGACTTGTATGTATTGATATTACTGATACATTTT
GTTTTCACTGGTTGTTTCAACTTTGCTCAAATCATTTTATTACAAAATTT
GTCGTCCATCCTTTGTTTTTGCATTCTCGCATGAGGTAATGGGCTTCCAG
AAGACGTTATCCACAAGAAAAACTTAAAATGGCCTAATCTGTTCAGTATT
ATCCTCCAGCCTGGTGCCACATTCATTGCTCATTATTATTCTTGGAGATC
GTGGGAAAAAACTCTCTGCCCCTGTTTCCAGTTATCCTCGTTTGTCAGTG
GCCTTATTGCTAAAACGTGGCTGAACTTTGGTCGCCAATTTTCGCTGATT
TCTCTGCCGTTGAGGCTAAGTGGTTGGGGCAGAATCCTGGAGCTGTCTTG
TTAAAGTGAAGTCAACGCAGGTCGTGAAAGGGAGGAATTACTGGGTGCAT
AAGGAGGGTAGCCAAGACACGAGATTCAGGGGCTGTAATTCCTCTAATAA
AATGTGGCATCGTGTTGGCATAAGGGTTATGGTGTTTGGTCTAGAACTCA
GAGGTCCTGGGTTTAAATCCCCTGACTATGACATGCCACCGATATTTTTA
CAATGTTTTTCCACCACCATGGTGTAAAAATGGGTACCTGACTTCAGTGG
GTGAGGTTAAATGTGGTGGAAGGACGGGGATGGGCTCTGCCCTCCAATAC
CGTGCCCTAGACACAGTGGATATCAACCCACTACCCATAAGGGTATCGCA
CTACCTTTATGTTTACCTTTTTATTCTTCTAAATCTGGAGTAGCTATAGG
GCTGCTTACCTAGTACAATGTACCTGTCCCCTGCCGTCCCTGTACTTGTA
AAATATGTTTATATTCCTGTCTGATGTACCTCTACCTGAACAAATGAAAC
ACTAGTGGACGTCCTTTCTTAGGTGAATCCCACCTCAAAGATGACTGTTT
CAACAATTTATAGCACTTAAGAATTATAAAAATCTTGATATATTCTTGTT
CCAAGATTAGAATATTGTATGTAAATCCTCATCCAAAGCTTTAAAAGAAT
TTACAAATCCCTCCAACCATAAGATATGATAACCTACTCCCTTGTACCAA
TATGAAATAGTACGACCCACACCAACTTCACACAGATATTTTTATCCAAC
AGTCATTTTTAAGAATTCTCAAAAATACTATAATGCTAGGTTTAAAGGAG
AGAATTCTGTATTTTTTTCTGAATTGTGTTATTTCTTTTTTTGCAAATTG
ACTAGATTTGCTGTTAATGACTTTACTTAATTAGTTACAATCAATTTTAC
TGAGCATATACATGTAGGTGACCCATATTGGTGGGACATGAACAGGTATT
GTTATGTGTTGCACAAGTTTTGACACCTCAGGCCCTTAAAGTGTCGCCTG
TCCCTCCTTAACCCTTCGGGTTGAACAAAGCATGTCCGTGTGGCCGTCTT
AAAGTAAACAGCTTTCTTAAGATCTCATTACCCCCCTCAGTCAACACCTT
ACATACAAAACCAATTATCCTTTGGGGGCATTACACGTTATTCCCACACT
CTTTCTCCCGAAATCGTCCAGATTTTACCTGGGAGGTTGGTGTGCAAGGG
TCAAGTTCCGACTTCGCGCCGCCAGTTCGGCGCCTGTTGCCGCTTTGTCG
CACGGCTGTCGCCGCGGCGTTGTAAACGCTTCCAAAGGAGACGTGTATGG
CGTAAGAGGATATCCCTGGGACAAAGGCAGAGGGGTGGAGCGAGAAAGCT
TATCCTCTTAAAACGGTTCTGACCCCTCAGTGTTAGCAGTGATCAACCTG
TGCCCGATTGTTAGTGAGACGCGTGTGACCCCCTGTACAGTACACACCTT
ACAGTGACAGTTACCACTCTTGCTTTGAATACTACTTTTTCAATACTACT
ACCCTTTTCTGCTCTACCTTGATTTAATCGTAGTAAATGAAGCACTCTAA
CAAAGGCTACAGCAAATCATTTCCTTGGATCTTGGACAAAATTTAGCTTG
CAGCCGAGAAATCTTAAATGAAAACTTGAATCCGACTACTGAGTGTACAC
ATATTTAATCCCAGAACCAAACTACAAACTTTCCTGCCAGACTATGTTTT
CATGTTGATATTGTTGTTCAGAAAATTTTTTTTCTTTTAATTTTAGATGT
GAGAACCCACAAATTTATTTGGGGTTGCCTTGTCAGGCCGTGTGCGACCT
TCCTGTTAGGTGGCCCGTGTTGTGTGGACGCTGTAGCGTTTCTTTGAGCC
TTTCCCACAGGAGCACAGTTACACCTATTGACTATCAATACTACTGCAGA
CACTCTGCACTTTACAGTATACACTGTCGTGCGCAGATACTTTTACACTG
TGGACGCGTATGTCTGCATTCCTCAGGACTGACACAAACAACAAAGAACA
AGAAAAGAGGGACCCTGTTTCTGACTAATGAGCCTTTGCTTAATCTCCAA
GCAGATGTAGGAAGGCAAAATTGTAACGTTGCTCAAGCTCCCAGACAATT
TCACGGAGCAGTTGTAGAAAGGCCATCTGCTCTGCAGAACTGGAACCTTT
AGAAATGTTACAATTTTTTCTATAGATCTATCTGCTTGGAGATTGCCTTT
GTTGTCTTCATTGCAGTGTTTATTTCATACTTTTTTAGACCAGCTTTTAC
ATGCAAAGAAAGGCCCAAACAACAAGTTGACATTAGCAACATTTTGTTCC
AAGCGGTATAGAGTTCATTCCATGTCACAGGATGGATTTTTAGATAAAAG
ATTTAATTTTTTAAGATTGTTGTGTTGTGTATGTGTGGTCTGTTTGGACC
CCAAACCTATATGTATGTTTTTTTAGCAGTACAGGATATGATGTAGCTAG
TCTGTATAACGCAAACTCCAGCTGTCCGGCGGTTTCAAGCGGTTACAGGG
CGGCGAGCGGTTACAGGACGCTTGATTAAAATCAGGCTAATGATATAGTT
ATATAGCCTGGAAGCCATCCTATACGATAGCCAAAGTGGACTGAGTAGGC
TGTCACCTAGGCTATGTATGATGAGTTCTTGAGTTTGATATCCCTTTGCT
CTACAGTCTACAGTCACCATCAGTTACTGTTGCAATATGCACACAAGTAA
GTGTAAGTTGTAACTTGTGATGGAACTTTCAACCTTTCCATATCATTCTG
ACGTCTCCAATTTTGATTCCACAGGAAATACCACAGAGGAGCAAAGGTAC
GATTGCGACTGAAAGACCTGGAACTCTCCACGCGGTTTATCGGAGGAACC
AAGAACACGACGCTCCTAGAGGCCGACGCTGTTCTGTTAGGTCTTCACAG
TCCTTTGGACGGAGACAGGCCAAGAAAATGAATAATTCTCCAACAAGAAG
ACCTATTCAAAACGTTGTTTCTAGCTTCGTTAGTTCATGTTGAAAGAGAC
TTTTCC Coding sequence (CDS) from alignment at Sc0000058:1196233..1203938- >transcript:BL87648_cuf0 ID=transcript:BL87648_cuf0|Name=transcript:BL87648_cuf0|organism=Branchiostoma lanceolatum|type=CDS|length=690bp|location=Sequence derived from alignment at Sc0000058:1196233..1203938- (Branchiostoma lanceolatum)
CAGCCGGGCTCTCCAATTCAGGATGAGAGTTTTGCGTCAATGTTGCGGAG
ATCGCCTCTGGTCCAGCTGGGTGACGTGAAAGACAGGATCGTGCTCGGGA
AGGTCTTCCATGTGGTCGAGAGCGACCTTTATATCGACTTTGGCGGCAAG
TTCTACTGCGTATGTCCCAAACCAGGGAAGGAACCCGAGAAATACCACAG
AGGAGCAAAGGTACGATTGCGACTGAAAGACCTGGAACTCTCCACGCGGT
TTATCGGAGGAACCAAGAACACGACGCTCCTAGAGGCCGACGCTGTTCTG
TTAGGTCTTCACAGTCCTTTGGACGGAGACAGGCCAAGAAAATGACAGCC
GGGCTCTCCAATTCAGGATGAGAGTTTTGCGTCAATGTTGCGGAGATCGC
CTCTGGTCCAGCTGGGTGACGTGAAAGACAGGATCGTGCTCGGGAAGGTC
TTCCATGTGGTCGAGAGCGACCTTTATATCGACTTTGGCGGCAAGTTCTA
CTGCGTATGTCCCAAACCAGGGAAGGAACCCGAGAAATACCACAGAGGAG
CAAAGGTACGATTGCGACTGAAAGACCTGGAACTCTCCACGCGGTTTATC
GGAGGAACCAAGAACACGACGCTCCTAGAGGCCGACGCTGTTCTGTTAGG
TCTTCACAGTCCTTTGGACGGAGACAGGCCAAGAAAATGA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| Sc0000058 | genome | Sc0000058:1196233..1203938 - |
Properties
| Property Name | Value |
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| Transcript id | BL87648_cuf0 |
| Biotype | protein_coding |
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