transcript:BL87617_cuf0 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL87617_cuf0
Unique Nametranscript:BL87617_cuf0
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



Full-screen view
Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL87617_cuf0

>transcript:BL87617_cuf0-protein ID=transcript:BL87617_cuf0-protein|Name=transcript:BL87617_cuf0|organism=Branchiostoma lanceolatum|type=polypeptide|length=105bp
IQPIVRLVGCRRMDPSANDICKCSSALRHQCKISHSIQPRTWTENYLWRH
FCFLVHDKTKGGCERAGHVFHSSHNTQTRCINIEITLASCPLCELRDTML
SPTSV
Run BLAST on NCBI

mRNA from alignment at Sc0000658:25856..26211-

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL87617_cuf0 ID=transcript:BL87617_cuf0|Name=transcript:BL87617_cuf0|organism=Branchiostoma lanceolatum|type=mRNA|length=356bp|location=Sequence derived from alignment at Sc0000658:25856..26211- (Branchiostoma lanceolatum)
TATACAACCAATTGTTCGGCTGGTCGGCTGTCGGAGAATGGACCCCTCCG
CTAATGATATATGCAAATGTAGCTCTGCGCTACGTCACCAATGTAAAATT
TCACACTCCATTCAACCACGGACGTGGACTGAGAACTACCTTTGGAGACA
TTTCTGCTTCCTTGTTCACGACAAAACAAAGGGAGGGTGTGAACGAGCAG
GACATGTATTTCACAGTTCACACAACACGCAAACACGCTGTATAAATATT
GAAATTACGCTTGCCTCATGCCCTCTTTGTGAATTACGAGATACAATGTT
ATCACCAACTTCTGTATAATCTAGTCCTTACTTCGATACTCAGTTCCGTT
TGCTGG

Coding sequence (CDS) from alignment at Sc0000658:25856..26211-

>transcript:BL87617_cuf0 ID=transcript:BL87617_cuf0|Name=transcript:BL87617_cuf0|organism=Branchiostoma lanceolatum|type=CDS|length=318bp|location=Sequence derived from alignment at Sc0000658:25856..26211- (Branchiostoma lanceolatum)
ATACAACCAATTGTTCGGCTGGTCGGCTGTCGGAGAATGGACCCCTCCGC
TAATGATATATGCAAATGTAGCTCTGCGCTACGTCACCAATGTAAAATTT
CACACTCCATTCAACCACGGACGTGGACTGAGAACTACCTTTGGAGACAT
TTCTGCTTCCTTGTTCACGACAAAACAAAGGGAGGGTGTGAACGAGCAGG
ACATGTATTTCACAGTTCACACAACACGCAAACACGCTGTATAAATATTG
AAATTACGCTTGCCTCATGCCCTCTTTGTGAATTACGAGATACAATGTTA
TCACCAACTTCTGTATAA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL87617gene:BL87617Branchiostoma lanceolatumgene
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL87617_cuf0-E1BL87617_cuf0-E1-1564476830-491159Branchiostoma lanceolatumexon
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL87617_cuf0transcript:BL87617_cuf0-proteinBranchiostoma lanceolatumpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000658genomeSc0000658:25856..26211 -
Properties
Property NameValue
Transcript idBL87617_cuf0
Biotypeprotein_coding