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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL87568_cuf2 >transcript:BL87568_cuf2-protein ID=transcript:BL87568_cuf2-protein|Name=transcript:BL87568_cuf2|organism=Branchiostoma lanceolatum|type=polypeptide|length=238bp
NSSNKMASMRSNSCTSMENIPSPLAQAAIDGDVRTALQLLEDGHDPNQRD
TRGRTPLHLAACRGAVDIMRVLVEFGAELSAVDQQGNTAMHMCGHVDTTQ
FLIDCGLQSDICNSHGLTPYMLAVRRGVKKQVLQLLERQLNQDSRQLYMQ
PQEEKLLLAAYSPERIETLEHLPTHPSSSPGLWRSSVIHDWGQFVEDVGQ
KRLICLLVVMACLSLFVAYKVTGIVPLMDTREERIEGP Run BLAST on NCBI mRNA from alignment at Sc0000042:1331231..1336638- Legend: polypeptideexonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL87568_cuf2 ID=transcript:BL87568_cuf2|Name=transcript:BL87568_cuf2|organism=Branchiostoma lanceolatum|type=mRNA|length=5408bp|location=Sequence derived from alignment at Sc0000042:1331231..1336638- (Branchiostoma lanceolatum)
AACAGCTCAAACAAGATGGCGTCGATGAGAAGTAACTCCTGCACTTCGAT
GGAGAATATCCCGTCTCCGCTGGCGCAGGCTGCGATAGGTGGGTTAGATG
TAGGTGGAATGGATAGATAATGTATTCAAGATCACAGGGAGTCCCCTGCA
CCTGTCATATTGGTGTTTATTTTGGTGTGGTGATACCTTTCGTGATGGTT
GTTCGCCCCCCTCCCCCTTCCTGTATATAGTTGCTTTGCGTTTGGCAGGT
CATTTTGGCATTGTTACATTCAACAACTTGTTGCCTTGCCAAGTACATCT
CATATATGTGCAATTAACAACCTTCAGTTGAGTCTTTCTGAGCCCGAACT
GGAACTTCAGTGGAAGCCTGGTCGCCCTAGCCGTGGCGACTAATGAAGGG
TGTTTTTGCTCAAGATATTACATATACTATCCCGTATCCTGTTTCAAAAT
TTTATCCAGTTGCTTGAGTAATTATTTTTGGCGTATTTTACTACCTGGAT
GTATAACTTTCATCAACGTATCCTGTAATATCAAGCAAAAACACCCTTCG
TTAATATAGTCGCCACGGCTAGCTCGCCCTAGCCCAGGGCCTTCATCTTG
CCCTGCCCCTTATGGGATGATATGGGGGTAACTCAAGATAGAGATGGGAA
GGCCTCTGTGAACAGTTTCTTCAAATGAATAGACTGCTTGTACACAACAA
AGTGTTTTATTCACCCGATCTTTTGGTGACAGTCTGACACCTTCCTCAGG
GCAATTCTTCCTGGTTCACACTATCACAGTGTTACTGGTTCGCACTATCA
CACTTGTGTTACATTATCCTGGTAAAATGAACAAACTGACATTTTAACCG
AAGCATGATAATATTTCCCCTTCAGATGGGGATGTGCGTACGGCACTGCA
GCTGCTGGAAGACGGGCACTTAATAAGGCTAAGCATTGTAATAATGAAGA
AGAAAAGAAGATATACCGATACAGATCCTGGTAAAATTACAGTAATCAAA
AGGAATGTTTAACTGAGCCGTGTTCATTTCTCCCCTTCAGATGGGGATGT
GCGTACGGCGCTGCAGCTGCTAGAGGACGGGCACGACCCAAACCAGCGGG
ACACAAGGGGACGGACCCCGCTGCACCTGGCAGCCTGCAGGGGCGCCGTG
GACATCATGAGGGTCCTGGTGGAGTTTGGGGCAGAGGTCAGGGGTCATAA
AGAAAATGTTGGACATTTTGGCACCAGGACAGTTTGGCCCGTAGCTGATC
AGGACGATTCGGCACTATTCCTAGGAATAGTCACTGTCCAGAGGACGCCT
AACTCTAACCCTAATCCTACCTTAACCATAATTCTACCCTAACCATGGCC
ATGACCCAAGTCATCCTAGCCCAGGTGCCAAACTGTCCTGATTGGCTTGG
GGCTGAACTGTCTAGAAATGTCTTGATACCATCTTACATGCACTACGGTA
CTACTACATCTCTGTCAGTAAGCAGACTTCATTAGCTCTAGATCCATCTA
TCCTTGTCCAGCTGAACTGAAGTCCTGATGCTGTGTGAGTGAATGGATAT
CAGAATAAGCTGTATTGTAGGACCCCTGAATGATGAGACACACTACTAGT
AATTTTATAGAAATACTGATACTTTGAATTCGTTAGGCAACTTGGGATAA
AAAGATTTGATTTCCTCAACTGCATACAAAGAACTGAAAAATATGATGAA
GGAAGACAATGGTGTTTTTAGATTCATTTTACTTTTCGTAAAGTCAGCTA
AAGAATTTTCCCTGGTACATTTTTTTATTGAACATGTATACTGGACATAG
ATTCTGTCTTCCTGTCACTACTACTGAATTAATATTAGATGTTCTGAACT
AAAACATTTCCCCATCTCTCTCCAGCTGTCGGCTGTAGACCAGCAGGGAA
ACACAGCCATGCACATGTGTGGTCACGTGGACACCACACAGTTCCTCATC
GACTGTGGCCTGCAGAGTGACATATGGTGAGACTCTTATATATACAGTAC
AGATAATACAGCAGAATCTCAGATTAATCTTTGAAGTATCGTATAAACCA
GTACATCCAGGACAGTTAAAGGTTTTAGTTGAGGCTCCCAATCATAGTGC
CATTGGAATTCAGACTGGGTGTTTTACAAATGTATTTTCTTATTCTGACA
TTATTCCTACTGTCCATATAAATGGCGAATGTTAAGTACATTTTGCCAAC
CTGCCTATGTACGCAGGCCAGGAGCTGGCCGGTTGCTCCCCTTGGCCACA
AGATTGAGTCTTTGCTTTTGTTACATCCAGTTTTGTCCAGTCATGTTATT
GAATGGACCACAGGAAGAGTAGCTGTTAAGCTAATGGTGGATCCTTATAA
ACTCAAACTCAAACATCATTCATGTTGGAAGTCACGGCCTATGCTAAGAG
CCCGAACACGCACAGGGGCCAAAATGATTCGGGATTACGACCCCCACCTG
CTCCACTGTCCCTCCGCTAGAGTTGCATCGTACCGTAGTAGTATGCAACA
CTATGGGCCTCAGTTGTGGAACACATTACCACTCAAACAAAGAACTGCTA
TTACTTACCAGAACTTTAAGAATGGCAATCCCGGCGGAAATTGAAATCTG
AATTGTATGTGACATGGCTTTTATTGATTGATTATTATTGTTACGGTGTA
CTATGTCGTAGCTGTGTTTTTTATATGTAATATCAGGGATACCTGAAAAA
CAGGCTTCACAGCCTGAGTTGTATTTCCCCTGTATAAATAAAATGAAAAT
AAATAAATAAATAAATCCACGTCTACAGTAACAGCCACGGGCTGACGCCC
TACATGCTGGCGGTGCGGCGGGGGGTGAAGAAGCAGGTGCTGCAGCTGCT
GGAGAGACAGCTGAACCAGGACAGCAGACAGCTGTACATGCAGCCGCAGG
AGGAGAAGGTGGGAAGACATATGATATGTGATGTAAAGTTTTATCAAATG
GATGAGGAAAGAAAAAAAATTAAACCTCAAGCCGAATCAGTAATCTTGGG
TGTAACAGAACGATGTTGAACTGGCTCGGACAAAGCCATCTTCTATGCAG
TACTAATTATCATTTTTGTTTGATCTTATACCTCACTACTACTGTTGTGC
ATGTATAAAGATGAATGTTTTCTTCTTTATTTCTTAGTGTAGAGGCTGTA
ATGCCATTTGCTGATTGGTCTCAAGAAGAAACCAGATGACATTATTACCT
TCGCCGAGAAGGTTATGCATAGGGTAGCATTTGTGTGTGCGTGTGTTTGT
TTGTAACAAACAGCATAACTCAAGAAGGCTTGGATGGATTGTCTTGATAT
TTAGTAGGTGGGTAGGTCTTGGTGAGACCTCGAAACGATTTGATGTTGGG
TCCCCTAGCGGCTTGTTACGGTACTTCAGCGAAACTTCCTGCTTTGATAT
CTCGTGTTCTGGACATACTATGGTCCTGATTTTTGAGTGGTAGATAGCTC
TTTGGACAGAGAGTGAGTGATATGGGTTTTGGCCCCCTATCGTTTTAGAG
GTACAATATGGGCTTGATCGTTAAAGATATGTTGAGATAACTTTTGCATG
CTTGCTTCCCACAGCTGTTGCTGGCTGCGTACTCCCCCGAGCGCATCGAG
ACCCTGGAGCACCTGCCGACCCACCCGTCATCCTCACCTGGGCTGTGGAG
GTCTGTTTTTGTGTTTTATGTAACTGGTAAATTGCCTTTAGGCAGGACAC
ACCAGTTTTGTACAATAGAGAAGAGTTGAGTAGACTGTTTCGGCCAAGTA
GGAGTCCTCTTGCTCCAGTCAAGGGACAATAGGTACAAGCTACATAATAC
CAGACTGTAAGGTTCTATCTCTTTTCGATAAGTGTGGTGGGATCTTTAAC
GTGCTTGAGGTGTGTCTCTCCTCAAACAGGGGACCTCCGCTTTATCTCCC
ATCTGAAAGTACATCCCTTACTGAAGCTACGTGCACATTTTCACCTGAGT
AGAGCAAGCTTAAGGAAATAGGTTTAAGTTGCCTAGGTCACAACATTTGG
GTGCTGCCAGGGATTCGAACCCAGAAACTTAAGATTTAGATTCAACAACC
CTAACAACCATACCACCTTGTTACCTTTTGAAGGTCTGTTAAACACAACC
GGGAAATAACTAAAATTGTTAAATCTGTCCAGGAGGTGTGCATGTTGGTA
GGCATGATTAAGACAGTGCAATAGGTGATGAGAAATGTTGTTGCTGCCTG
TGCAGGTCTGTAATCCATGACTGGGGCCAGTTTGTGGAGGATGTGGGACA
GAAGCGGCTGATCTGCCTGCTGGTGGTCATGGCCTGCCTCTCGCTGTTTG
TGGCCTACAAGGTGACCGGCATCGTGCCGCTCATGGACACACGCGAGGAG
AGAATAGAGGGGCCATGAACCGGGGGTGTTGATGTGTGTATAGTGACCAA
ATGACAATGTTATTCCGTGAATAATTTCATCAGGTTGCTACATGTAAATG
ACTGAATGGCAAAGTTCTTTATTCACAACCAAGGGTGTAAATGAGCTGTC
GTCTGAAGACTGACTGTCTCTGTCATCTTCATCTGTGCACTGTGAACCAG
TCAGTATTGCCCTGATGAAGACGAGTCATGGAAACGTCGGCTTGTGTAAA
TACTTGGTTGCGAAGAACTTTGCTATTTAGACAGTGGTATTATATGAAAT
TTTAATCATGTCCAATGCCAAGTATACATAATGTACAAATTTCCAGTATT
TGTGAACATGCCAGAATTGTGTATATACGTTTGTCTGTCCAGCACAAAGA
AAACTTGCATAGTAGTTAATAAATCGGTGCTTTCTTTGTTGTTGCAACCT
TTCATCCAAGCACATGTACTAGTAGGACTTCTAAGTGGACATAAATTAAA
TGGACTCAAACCAAAATGAATGTGGTACCCAGATGTACATTTATATGGTA
TGAAAGGTCACTGGCAGTACAACAATCACCTTAGTTGTCAGTTCATTTGA
TATTAGAAGCCAATTTCTTTCACCATTATGATAAAGTTTTCAATACATTT
CCAGCTTGATTCTTGTGTACTGTGTATGGAAAATAACAATGTAAATAAAA
ATTATGTATAATATGATACAGGTACAACTGTATTTTTTGTTACTTAAAGT
TACTTCTAACCATGGCTTTATCCCACAAATAAAGAGCCTTAAGTACAGCA
AATAATGTGTTAGATCATGCACTTCGGGACCCACAATACAAGCAAGATAC
TGTATTTTTCCACCTAGTGATGAAAGAAAAGTGATACTTTTTTGTAAACA
ATGTATTTTTGAAGCAGTATCTGAACCAGGCTCAGCAAAGTGTTATGATC
AAAGTGTTGACACTCAAGTGTGGAAACTAGGCAAATATTTTATAATGTAT
AGAGTATAAGTCATTCCTGAATGCTTGTTCTGCAAGTCTATGGTTATTGT
TATGTATC Coding sequence (CDS) from alignment at Sc0000042:1331231..1336638- >transcript:BL87568_cuf2 ID=transcript:BL87568_cuf2|Name=transcript:BL87568_cuf2|organism=Branchiostoma lanceolatum|type=CDS|length=4302bp|location=Sequence derived from alignment at Sc0000042:1331231..1336638- (Branchiostoma lanceolatum)
AACAGCTCAAACAAGATGGCGTCGATGAGAAGTAACTCCTGCACTTCGAT
GGAGAATATCCCGTCTCCGCTGGCGCAGGCTGCGATAGATGGGGATGTGC
GTACGGCGCTGCAGCTGCTAGAGGACGGGCACGACCCAAACCAGCGGGAC
ACAAGGGGACGGACCCCGCTGCACCTGGCAGCCTGCAGGGGCGCCGTGGA
CATCATGAGGGTCCTGGTGGAGTTTGGGGCAGAGCTGTCGGCTGTAGACC
AGCAGGGAAACACAGCCATGCACATGTGTGGTCACGTGGACACCACACAG
TTCCTCATCGACTGTGGCCTGCAGAGTGACATATGTAACAGCCACGGGCT
GACGCCCTACATGCTGGCGGTGCGGCGGGGGGTGAAGAAGCAGGTGCTGC
AGCTGCTGGAGAGACAGCTGAACCAGGACAGCAGACAGCTGTACATGCAG
CCGCAGGAGGAGAAGCTGTTGCTGGCTGCGTACTCCCCCGAGCGCATCGA
GACCCTGGAGCACCTGCCGACCCACCCGTCATCCTCACCTGGGCTGTGGA
GGTCGTCTGTAATCCATGACTGGGGCCAGTTTGTGGAGGATGTGGGACAG
AAGCGGCTGATCTGCCTGCTGGTGGTCATGGCCTGCCTCTCGCTGTTTGT
GGCCTACAAGGTGACCGGCATCGTGCCGCTCATGGACACACGCGAGGAGA
GAATAGAGGGGCCATGAAACAGCTCAAACAAGATGGCGTCGATGAGAAGT
AACTCCTGCACTTCGATGGAGAATATCCCGTCTCCGCTGGCGCAGGCTGC
GATAGATGGGGATGTGCGTACGGCGCTGCAGCTGCTAGAGGACGGGCACG
ACCCAAACCAGCGGGACACAAGGGGACGGACCCCGCTGCACCTGGCAGCC
TGCAGGGGCGCCGTGGACATCATGAGGGTCCTGGTGGAGTTTGGGGCAGA
GCTGTCGGCTGTAGACCAGCAGGGAAACACAGCCATGCACATGTGTGGTC
ACGTGGACACCACACAGTTCCTCATCGACTGTGGCCTGCAGAGTGACATA
TGTAACAGCCACGGGCTGACGCCCTACATGCTGGCGGTGCGGCGGGGGGT
GAAGAAGCAGGTGCTGCAGCTGCTGGAGAGACAGCTGAACCAGGACAGCA
GACAGCTGTACATGCAGCCGCAGGAGGAGAAGCTGTTGCTGGCTGCGTAC
TCCCCCGAGCGCATCGAGACCCTGGAGCACCTGCCGACCCACCCGTCATC
CTCACCTGGGCTGTGGAGGTCGTCTGTAATCCATGACTGGGGCCAGTTTG
TGGAGGATGTGGGACAGAAGCGGCTGATCTGCCTGCTGGTGGTCATGGCC
TGCCTCTCGCTGTTTGTGGCCTACAAGGTGACCGGCATCGTGCCGCTCAT
GGACACACGCGAGGAGAGAATAGAGGGGCCATGAAACAGCTCAAACAAGA
TGGCGTCGATGAGAAGTAACTCCTGCACTTCGATGGAGAATATCCCGTCT
CCGCTGGCGCAGGCTGCGATAGATGGGGATGTGCGTACGGCGCTGCAGCT
GCTAGAGGACGGGCACGACCCAAACCAGCGGGACACAAGGGGACGGACCC
CGCTGCACCTGGCAGCCTGCAGGGGCGCCGTGGACATCATGAGGGTCCTG
GTGGAGTTTGGGGCAGAGCTGTCGGCTGTAGACCAGCAGGGAAACACAGC
CATGCACATGTGTGGTCACGTGGACACCACACAGTTCCTCATCGACTGTG
GCCTGCAGAGTGACATATGTAACAGCCACGGGCTGACGCCCTACATGCTG
GCGGTGCGGCGGGGGGTGAAGAAGCAGGTGCTGCAGCTGCTGGAGAGACA
GCTGAACCAGGACAGCAGACAGCTGTACATGCAGCCGCAGGAGGAGAAGC
TGTTGCTGGCTGCGTACTCCCCCGAGCGCATCGAGACCCTGGAGCACCTG
CCGACCCACCCGTCATCCTCACCTGGGCTGTGGAGGTCGTCTGTAATCCA
TGACTGGGGCCAGTTTGTGGAGGATGTGGGACAGAAGCGGCTGATCTGCC
TGCTGGTGGTCATGGCCTGCCTCTCGCTGTTTGTGGCCTACAAGGTGACC
GGCATCGTGCCGCTCATGGACACACGCGAGGAGAGAATAGAGGGGCCATG
AAACAGCTCAAACAAGATGGCGTCGATGAGAAGTAACTCCTGCACTTCGA
TGGAGAATATCCCGTCTCCGCTGGCGCAGGCTGCGATAGATGGGGATGTG
CGTACGGCGCTGCAGCTGCTAGAGGACGGGCACGACCCAAACCAGCGGGA
CACAAGGGGACGGACCCCGCTGCACCTGGCAGCCTGCAGGGGCGCCGTGG
ACATCATGAGGGTCCTGGTGGAGTTTGGGGCAGAGCTGTCGGCTGTAGAC
CAGCAGGGAAACACAGCCATGCACATGTGTGGTCACGTGGACACCACACA
GTTCCTCATCGACTGTGGCCTGCAGAGTGACATATGTAACAGCCACGGGC
TGACGCCCTACATGCTGGCGGTGCGGCGGGGGGTGAAGAAGCAGGTGCTG
CAGCTGCTGGAGAGACAGCTGAACCAGGACAGCAGACAGCTGTACATGCA
GCCGCAGGAGGAGAAGCTGTTGCTGGCTGCGTACTCCCCCGAGCGCATCG
AGACCCTGGAGCACCTGCCGACCCACCCGTCATCCTCACCTGGGCTGTGG
AGGTCGTCTGTAATCCATGACTGGGGCCAGTTTGTGGAGGATGTGGGACA
GAAGCGGCTGATCTGCCTGCTGGTGGTCATGGCCTGCCTCTCGCTGTTTG
TGGCCTACAAGGTGACCGGCATCGTGCCGCTCATGGACACACGCGAGGAG
AGAATAGAGGGGCCATGAAACAGCTCAAACAAGATGGCGTCGATGAGAAG
TAACTCCTGCACTTCGATGGAGAATATCCCGTCTCCGCTGGCGCAGGCTG
CGATAGATGGGGATGTGCGTACGGCGCTGCAGCTGCTAGAGGACGGGCAC
GACCCAAACCAGCGGGACACAAGGGGACGGACCCCGCTGCACCTGGCAGC
CTGCAGGGGCGCCGTGGACATCATGAGGGTCCTGGTGGAGTTTGGGGCAG
AGCTGTCGGCTGTAGACCAGCAGGGAAACACAGCCATGCACATGTGTGGT
CACGTGGACACCACACAGTTCCTCATCGACTGTGGCCTGCAGAGTGACAT
ATGTAACAGCCACGGGCTGACGCCCTACATGCTGGCGGTGCGGCGGGGGG
TGAAGAAGCAGGTGCTGCAGCTGCTGGAGAGACAGCTGAACCAGGACAGC
AGACAGCTGTACATGCAGCCGCAGGAGGAGAAGCTGTTGCTGGCTGCGTA
CTCCCCCGAGCGCATCGAGACCCTGGAGCACCTGCCGACCCACCCGTCAT
CCTCACCTGGGCTGTGGAGGTCGTCTGTAATCCATGACTGGGGCCAGTTT
GTGGAGGATGTGGGACAGAAGCGGCTGATCTGCCTGCTGGTGGTCATGGC
CTGCCTCTCGCTGTTTGTGGCCTACAAGGTGACCGGCATCGTGCCGCTCA
TGGACACACGCGAGGAGAGAATAGAGGGGCCATGAAACAGCTCAAACAAG
ATGGCGTCGATGAGAAGTAACTCCTGCACTTCGATGGAGAATATCCCGTC
TCCGCTGGCGCAGGCTGCGATAGATGGGGATGTGCGTACGGCGCTGCAGC
TGCTAGAGGACGGGCACGACCCAAACCAGCGGGACACAAGGGGACGGACC
CCGCTGCACCTGGCAGCCTGCAGGGGCGCCGTGGACATCATGAGGGTCCT
GGTGGAGTTTGGGGCAGAGCTGTCGGCTGTAGACCAGCAGGGAAACACAG
CCATGCACATGTGTGGTCACGTGGACACCACACAGTTCCTCATCGACTGT
GGCCTGCAGAGTGACATATGTAACAGCCACGGGCTGACGCCCTACATGCT
GGCGGTGCGGCGGGGGGTGAAGAAGCAGGTGCTGCAGCTGCTGGAGAGAC
AGCTGAACCAGGACAGCAGACAGCTGTACATGCAGCCGCAGGAGGAGAAG
CTGTTGCTGGCTGCGTACTCCCCCGAGCGCATCGAGACCCTGGAGCACCT
GCCGACCCACCCGTCATCCTCACCTGGGCTGTGGAGGTCGTCTGTAATCC
ATGACTGGGGCCAGTTTGTGGAGGATGTGGGACAGAAGCGGCTGATCTGC
CTGCTGGTGGTCATGGCCTGCCTCTCGCTGTTTGTGGCCTACAAGGTGAC
CGGCATCGTGCCGCTCATGGACACACGCGAGGAGAGAATAGAGGGGCCAT
GA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000042 | genome | Sc0000042:1331231..1336638 - |
Properties
| Property Name | Value |
|---|
| Transcript id | BL87568_cuf2 |
| Biotype | protein_coding |
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