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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL87218_cuf0 >transcript:BL87218_cuf0-protein ID=transcript:BL87218_cuf0-protein|Name=transcript:BL87218_cuf0|organism=Branchiostoma lanceolatum|type=polypeptide|length=388bp
HAKIFLKENSARDHGTLFANMNRVKCSNAKKGPHHAYNAYKDFVRKDTSA
LFIAAAMEVFGMDNMEDVPKDFPHDIMDKTKEEQRSWLHSKVAQVVDKFV
TTTDIANMMDIYNGVSQASQPRQREELSCREPECHRKFVYPKSRLTHEQK
CHGLDFGETPDSHKEEPTAKSSPRDYKKEHTEARLSFGFFLENMQDAVKE
GDGERLIRLYRVALLFYRAYGHTQYAYSTLLLHAQVNAVLSPAKAHSLKW
NRFFNGKGGKGKNIPLDLHLEHLNNFLKSFLKGMGPNLSEASADRVSKSL
GPLRKILDNVDKELRVSSPSGYHHSASETQDILALVEVIREADLFNFTAG
RAFGAFPNFDRNLLARIKYADLWEWIKARLKLWNTKYY Run BLAST on NCBI mRNA from alignment at Sc0000059:788179..792503- Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL87218_cuf0 ID=transcript:BL87218_cuf0|Name=transcript:BL87218_cuf0|organism=Branchiostoma lanceolatum|type=mRNA|length=4325bp|location=Sequence derived from alignment at Sc0000059:788179..792503- (Branchiostoma lanceolatum)
CCATGCCAAAATCTTCCTCAAGGAAAACTCAGCACGGGACCATGGGACTT
TGTTCGCAAACATGAACAGAGTGAAATGCAGCAATGCAAAGAAAGGCCCT
CACCATGCTTACAATGCCTACAAGGACTTTGTCAGGAAGGACACCTCTGC
CCTCTTCATTGCGGCAGCAATGGAGGTATTCGGAATGGACAACATGGAAG
GTGATTTATAAAATTTCTACATTAGATACACTGCTTAATCATTTAAAACT
TATATGTTCTGTAAGAGGCTTTATAAATATCATTGTAATGTACACGTATT
TAGCTACAGCCTGAGTACCATCCTCCATAGTGGCCACTGGCTCAATGCTT
TTCGCTTGGAGCCGTGGTTATCAAGCGACAAGCATTTAGCCAGCGGTCAC
TACAGAGGATGGTACTCAGTCTAATTTAGCTAGTACTGTAGTAGTAGAAG
TTCTTATGGACAATTTAGTGGTCTCGTTAGTTGTAGGGATGAATTTTGAG
TATGCACATAGATCACTGTATCTACAAAGACAAGTCATGTAATTACATTA
AGATGACTACATGCCAGTTTGCAATAACATTTCTAAAGCTATCAGTGCTT
GTTCATTCTGTCTTCCAGATGTGCCCAAGGACTTTCCCCATGACATCATG
GACAAGACCAAGGAGGAGCAGCGAAGCTGGCTACACAGCAAGGTCGCCCA
GGTTGTGGATAAGTTTGTCACAACTACTGATATAGCCAACATGATGGACA
TCTACAACGGGGTGAGCCAGGCGTCACAGCCCCGGCAAAGGGAAGAGCTC
AGCTGCAGGGAGCCTGAGTGCCATCGGAAGTTTGTTTACCCCAAGAGCAG
GCTGACCCATGAGCAGAAATGCCATGGGTTAGACTTTGGGGAGACTCCTG
ACAGCCACAAGGAAGAGCCCACTGCTAAGTCTTCCCCTCGTGACTACAAG
AAAGAACACACTGAGGCAAGACTTAGCTTTGGGTTTTTCCTTGAGAACAT
GCAGGATGCCGTCAAAGAGGGGGACGGTGAGAGATTGATAAGACTATATA
GAGTTGCTTTGCTCTTCTACAGAGCATATGGTCATACCCAGTATGCATAC
AGCACATTACTCTTGCATGCTCAAGTCAATGCTGTGCTTTCTCCAGCAAA
AGCCCACAGTCTCAAATGGAACAGATTTTTCAACGGGAAGGGTGGGAAGG
GAAAAAACATCCCCTTGGACTTGCACTTGGAACATTTGAATAATTTCCTA
AAGTCGTTCTTGAAAGGTATGGGTCCAAATCTCTCAGAAGCGAGTGCTGA
TAGAGTGAGTAAGTCTCTGGGACCACTCAGAAAGATTTTAGACAATGTAG
ACAAAGAGCTGAGAGTTTCCAGCCCCTCTGGATACCATCACAGTGCCTCA
GAAACTCAAGACATTCTGGCACTAGTGGAGGTTATCAGGGAGGCAGACCT
CTTCAACTTCACTGCTGGCCGGGCATTTGGTGCCTTCCCAAACTTTGACA
GAAATCTACTAGCCCGCATTAAGTATGCTGACTTGTGGGAGTGGATCAAG
GCCAGATTAAAGCTTTGGAACACAAAATACTACTAGTAGTACCTGTAATG
CTTGGGTCACATCTTCAATGAGGAAATAGAAAGTGAGCAAGACTGACACT
GATGTGAAATGAAGCCAATTTATTATTATTTCTGTATCTCTTTTCACTGT
ACATTGTACATAAGGATACATGTATGGTCAACTTTCACTCTAGTACTGGT
ATCATTGTATGATTTCTACAAATTTGCTATTTCAAAAAGCAAATATGATA
GTAAAACACAGTGTTAATCAATGGAAAATGAATGTCAGTGAGTCATAACA
GGGTGCGAAATACCTGGTTGCACGTTGCACAGTGCAACAAGATTTCGGTT
GGCGCAAGTTAATTCCAAACCCAGGTAGCGCAGTGTGCAACCTTATATTT
TGAGCCAAAGATTTCAATCGGAACCCTGGAAGCTCACAAAAACAGTGTCA
CTCTCATAAAATTCGGTAAATCTTCAATTGAAATAAAGAAATCAACACTT
TTTCGTTTTAAACAATCCAAAACCCTTCATAGATCGTGGAATTTGAGCTG
AAAAATACAAAAACACACTGCCCTCAGCTAAACAAGATGTTGTTACATGT
AGGTCAATGGGAACACAATACTATCTAATATATATTTTGAAATGTTAGTA
GTATTATACGCTACATACGAGCTTGATTTGAAGAAATCGGTGAATGTTGC
TGGAGCAACCTGAAATTTGGATGTGCAACCTAGCATTTGCCCTTGGTTGC
AACATGGGCAACCGGGCTCAAAAAAGTATTTCGCACCCTGGTCATACCGT
ACTATAGGACAAAGTCTGCCAAACTGTCTTGATCAGAGTCACTATCATAC
AGTGAACTGACATCATTATCAAAGTTATCAGGCCCATCAAAGTACCCGGG
ATAATCTATATCTGGGTCCTCAAAAGATTCTAAAACTGATGCCTCGACAT
ACTCGATGTCTCCAAAAATCTCGTACATGATTCGGAGAATTTCTTTGGCA
TGTTCTCCGTAGAAGACAGGGAGGTGAGTGACAATGTAGTCAAGGTCAAA
AATGTGGGTACAGTTGTCAACGACTAGATCAATCAACTCGTCGCTAAAAC
CAGTGCACGCCTCAGCATTGGTATACAGATGTGTTGTATTGGCTAGCAAG
TAAGTCCGATAATCCTGCAGATTTTCCCTGATCAGAATTCTGTCTTCTGG
ATCTACATTTCTGTATCTAGTAGGTAACTTTACAATATTAATGAAGGATT
CAGAAGATGGGAATGGAGTTTCACATGCTTCACCCGCACATGTACATGTC
CTGTGACAGTGTGTGCAACATTTGTGGCCAGGTTCCACACTGATTGGGCT
ATCTTCAAACAGACCATATAAAGCCTTACGGAGGCAGTCACTTGGACTTG
TCTTCAATAAACCCTTAACAGCCTTATCAACATTGATTAGCTGTACCCCA
TGGTAGTACAATACGGCATTGACAAATGACCCACCACGGCCAGCTCTACC
AACTTGCTGGAGTATACCTTCTGCATCCTCTGGTGGGCCGTACATTATCA
CATACGATATATTTGGGAAGTTCAGTCCCATACTTAGAGAAGTAGTCGCA
ATAACAACTCTACAGTTGCCATCACCATTCAGTGAGGAAGCAGCATACTG
CTTGTATTTGGGCAGGGTGTTGCCCTGGTATATGCCAATGAAACAGTTTT
TCATTCTGCGTTTAGGGTCTCCATCCACCCAGGCATCTTGTCCCAGCTCT
GAAAGCAGGTACTGATGTACATCACCAGTTGTTTTTAGTGAACGACAGTA
GATGATCATCTGCGGTGCAGCAACACCATCATCTCTTACCGTCTTAACTA
CCCAGTCAAAGCATTTCATATTATTCTTCGGCAGTTTTACAATACTCAGT
CTTATGTTTTCTTTGTTTGGGGATACAGTTATTCTCCTTGCTCCTTGCAT
GTTCAGCAGGCTGATGACCCTCTCTCTAGACTGGGTGTCTGCTGAAGCTG
TCAATGCCAGGATTGGAGTATCTGTAAAACAGTAACAAACATGATGGTAG
AAACTTTATACAACAGAATAATTATCAAGTGAATGTACTAGTGCCATGCC
TGTCAAACAGCTGCTCTAGTGTCTACATGTTCTAGTGTAATGACGCCTGT
ACACTTTATGCAATGTAAATAGTGTGATCCCTTTACGACTTCATTCACTT
CCAATCAATCATTGTGTATTTTCTGTTATGTAAAATCTGTAAAGATGTAA
GTGTAAGAACTACATATGATATGCTCCAGTAGTGTACATGTCTGTTACTA
CATGTTAGAAGTATGTACCTCAACATGCATCTGTTACATCCTGGAATAAA
TTCTAGGCTTATTGAAATGTATTCCTCACAAGTCACATCTAGTATGATCT
ACTTTTCTATTTTGAACATACACAGCTTTAGGAGATAGACAACACTGAAA
TGACTTTACACTTATCCCAAACGACAGCAACATATATACGTTATACAGTA
ATAATTTTACCTTCTCTGACAAGCGATCGCAGCTCACCCAACCGACTGAA
GCTTTCCCGAAAGGCAGGACTTCCCTCTTTCGTAGATTGCCCCCTACAAG
TGCATAACAAACGAAGATTAGATCATTTGTTTGGGATTCTTGCAAGACAA
TTAAATAAGTATATGAATATGTATATGACTTGTATCAAGTTAGCTTGGGT
GCAAAATCATTCACAAGAGTTAGATAATTTGCAGACACCGTTACACTGTA
AAACTACATCCTACGGACACACCAT Coding sequence (CDS) from alignment at Sc0000059:788179..792503- >transcript:BL87218_cuf0 ID=transcript:BL87218_cuf0|Name=transcript:BL87218_cuf0|organism=Branchiostoma lanceolatum|type=CDS|length=2334bp|location=Sequence derived from alignment at Sc0000059:788179..792503- (Branchiostoma lanceolatum)
CATGCCAAAATCTTCCTCAAGGAAAACTCAGCACGGGACCATGGGACTTT
GTTCGCAAACATGAACAGAGTGAAATGCAGCAATGCAAAGAAAGGCCCTC
ACCATGCTTACAATGCCTACAAGGACTTTGTCAGGAAGGACACCTCTGCC
CTCTTCATTGCGGCAGCAATGGAGGTATTCGGAATGGACAACATGGAAGA
TGTGCCCAAGGACTTTCCCCATGACATCATGGACAAGACCAAGGAGGAGC
AGCGAAGCTGGCTACACAGCAAGGTCGCCCAGGTTGTGGATAAGTTTGTC
ACAACTACTGATATAGCCAACATGATGGACATCTACAACGGGGTGAGCCA
GGCGTCACAGCCCCGGCAAAGGGAAGAGCTCAGCTGCAGGGAGCCTGAGT
GCCATCGGAAGTTTGTTTACCCCAAGAGCAGGCTGACCCATGAGCAGAAA
TGCCATGGGTTAGACTTTGGGGAGACTCCTGACAGCCACAAGGAAGAGCC
CACTGCTAAGTCTTCCCCTCGTGACTACAAGAAAGAACACACTGAGGCAA
GACTTAGCTTTGGGTTTTTCCTTGAGAACATGCAGGATGCCGTCAAAGAG
GGGGACGGTGAGAGATTGATAAGACTATATAGAGTTGCTTTGCTCTTCTA
CAGAGCATATGGTCATACCCAGTATGCATACAGCACATTACTCTTGCATG
CTCAAGTCAATGCTGTGCTTTCTCCAGCAAAAGCCCACAGTCTCAAATGG
AACAGATTTTTCAACGGGAAGGGTGGGAAGGGAAAAAACATCCCCTTGGA
CTTGCACTTGGAACATTTGAATAATTTCCTAAAGTCGTTCTTGAAAGGTA
TGGGTCCAAATCTCTCAGAAGCGAGTGCTGATAGAGTGAGTAAGTCTCTG
GGACCACTCAGAAAGATTTTAGACAATGTAGACAAAGAGCTGAGAGTTTC
CAGCCCCTCTGGATACCATCACAGTGCCTCAGAAACTCAAGACATTCTGG
CACTAGTGGAGGTTATCAGGGAGGCAGACCTCTTCAACTTCACTGCTGGC
CGGGCATTTGGTGCCTTCCCAAACTTTGACAGAAATCTACTAGCCCGCAT
TAAGTATGCTGACTTGTGGGAGTGGATCAAGGCCAGATTAAAGCTTTGGA
ACACAAAATACTACTAGCATGCCAAAATCTTCCTCAAGGAAAACTCAGCA
CGGGACCATGGGACTTTGTTCGCAAACATGAACAGAGTGAAATGCAGCAA
TGCAAAGAAAGGCCCTCACCATGCTTACAATGCCTACAAGGACTTTGTCA
GGAAGGACACCTCTGCCCTCTTCATTGCGGCAGCAATGGAGGTATTCGGA
ATGGACAACATGGAAGATGTGCCCAAGGACTTTCCCCATGACATCATGGA
CAAGACCAAGGAGGAGCAGCGAAGCTGGCTACACAGCAAGGTCGCCCAGG
TTGTGGATAAGTTTGTCACAACTACTGATATAGCCAACATGATGGACATC
TACAACGGGGTGAGCCAGGCGTCACAGCCCCGGCAAAGGGAAGAGCTCAG
CTGCAGGGAGCCTGAGTGCCATCGGAAGTTTGTTTACCCCAAGAGCAGGC
TGACCCATGAGCAGAAATGCCATGGGTTAGACTTTGGGGAGACTCCTGAC
AGCCACAAGGAAGAGCCCACTGCTAAGTCTTCCCCTCGTGACTACAAGAA
AGAACACACTGAGGCAAGACTTAGCTTTGGGTTTTTCCTTGAGAACATGC
AGGATGCCGTCAAAGAGGGGGACGGTGAGAGATTGATAAGACTATATAGA
GTTGCTTTGCTCTTCTACAGAGCATATGGTCATACCCAGTATGCATACAG
CACATTACTCTTGCATGCTCAAGTCAATGCTGTGCTTTCTCCAGCAAAAG
CCCACAGTCTCAAATGGAACAGATTTTTCAACGGGAAGGGTGGGAAGGGA
AAAAACATCCCCTTGGACTTGCACTTGGAACATTTGAATAATTTCCTAAA
GTCGTTCTTGAAAGGTATGGGTCCAAATCTCTCAGAAGCGAGTGCTGATA
GAGTGAGTAAGTCTCTGGGACCACTCAGAAAGATTTTAGACAATGTAGAC
AAAGAGCTGAGAGTTTCCAGCCCCTCTGGATACCATCACAGTGCCTCAGA
AACTCAAGACATTCTGGCACTAGTGGAGGTTATCAGGGAGGCAGACCTCT
TCAACTTCACTGCTGGCCGGGCATTTGGTGCCTTCCCAAACTTTGACAGA
AATCTACTAGCCCGCATTAAGTATGCTGACTTGTGGGAGTGGATCAAGGC
CAGATTAAAGCTTTGGAACACAAAATACTACTAG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000059 | genome | Sc0000059:788179..792503 - |
Properties
| Property Name | Value |
|---|
| Transcript id | BL87218_cuf0 |
| Biotype | protein_coding |
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