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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL87217_cuf0 >transcript:BL87217_cuf0-protein ID=transcript:BL87217_cuf0-protein|Name=transcript:BL87217_cuf0|organism=Branchiostoma lanceolatum|type=polypeptide|length=517bp
RKTSTEDMMNFSLDELHADLKRLSPFLASILSTVSNKSRNHICASAAVAI
RGRNNHLSAFAHYINAVLEYGGAKTAVFTRLCQFGISTTQENARMKQKEL
ASTCGRDLQAMKMRLSAYAVEKVKACVADGKMDTHAGDGKMDTHAGDGKM
DTHAGDGKMDTHAGDGKMDTHAGDGKMDTHAGDGKMDTHAGDGKMDTHAG
DGKMDTHAGDGKMDTHAGDGKMDTHAGDGKMDTHAGDGKMDTHAGDGKMD
THAGDGKMDTHAGDGKMDTHAGDGKMDTHAGDGKMDTHADSSDYTHMFNQ
LTLTSEDFSDLAIGFLTPPTELESTPPLESTPPPTYSIIFDNLDFHKQTH
HQSETNRNQSIHWTHHIAVQDRISTHHLPNNEPTKPLPLFQIGDCLPTPE
IEAHMRNESIILGSRIITQHMPAFKKLAPVVIYHIPHEYSETMSEQSTEF
PLGLLFKNESISSDLVDILQHMQREYVPRTPMGLLSVPVGGDRLTEGNSR
GVQWAFGNGETPEDRLE Run BLAST on NCBI mRNA from alignment at Sc0000059:797330..799750- Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL87217_cuf0 ID=transcript:BL87217_cuf0|Name=transcript:BL87217_cuf0|organism=Branchiostoma lanceolatum|type=mRNA|length=2421bp|location=Sequence derived from alignment at Sc0000059:797330..799750- (Branchiostoma lanceolatum)
GAGAAAAACAAGTACAGAAGACATGATGAACTTTTCCCTAGATGAACTCC
ATGCCGACTTAAAGCGACTGTCACCATTCCTTGCGTCCATCCTTAGTACA
GTGTCTAACAAGTCAAGAAACCACATATGTGCGAGTGCTGCAGTCGCCAT
ACGAGGCCGGAACAACCACCTCTCAGCATTTGCCCACTACATCAACGCTG
TTCTGGAGTATGGAGGGGCAAAGACAGCTGTCTTCACTCGATTGTGTCAG
TTCGGCATCAGTACAACACAAGAAAATGCACGTATGAAGCAGAAAGAGTT
GGCCAGCACATGTGGAAGGGATTTACAAGCCATGAAGATGAGGTTGTCGG
CTTATGCTGTGGAAAAGGTGAAAGCATGTGTTGCAGATGGGAAGATGGAC
ACGCATGCTGGAGATGGGAAGATGGACACGCATGCTGGAGATGGGAAGAT
GGACACGCATGCTGGAGATGGGAAGATGGACACGCATGCTGGAGATGGGA
AGATGGACACGCATGCTGGAGATGGGAAGATGGACACGCATGCTGGAGAT
GGGAAGATGGACACGCATGCTGGAGATGGGAAGATGGACACGCATGCTGG
AGATGGGAAGATGGACACGCATGCTGGAGATGGGAAGATGGACACGCATG
CTGGAGATGGGAAGATGGACACGCATGCTGGAGATGGGAAGATGGACACG
CATGCTGGAGATGGGAAGATGGACACGCATGCTGGAGATGGGAAGATGGA
CACGCATGCTGGAGATGGGAAGATGGACACGCATGCTGGAGATGGGAAGA
TGGACACGCATGCTGGAGATGGGAAGATGGACACGCATGCTGGAGATGGG
AAGATGGACACGCATGCTGACAGCTCTGATTACACACACATGTTCAACCA
GCTTACTCTCACGAGTGAAGATTTTAGTGATCTCGCAATCGGCTTCCTGA
CTCCTCCTACAGAACTTGAATCCACTCCACCACTTGAATCCACTCCACCA
CCGACCTACAGTATCATTTTCGACAACCTGGACTTTCACAAACAAACACA
TCACCAGTCAGAAACCAACCGCAACCAATCAATCCACTGGACTCACCACA
TCGCTGTTCAGGATCGGATTTCTACCCATCATCTCCCCAACAATGAACCT
ACTAAGCCCCTTCCACTCTTCCAAATAGGAGACTGTCTTCCCACACCAGA
AATTGAAGCCCACATGCGTAATGAATCCATAATCCTGGGTAGCAGAATAA
TCACACAGCACATGCCAGCTTTCAAAAAGTTAGCACCTGTTGTGATTTAC
CATATACCACATGAGTACTCAGAGACCATGTCAGAGCAGTCAACTGAGGT
GAGCTACATATAATATTGCTTGAATGTGAAAGTCTTGGAATTTGTTGCAG
TCAGTCATGCTAAATTAATGATTTATATTAAACTTTATGTACATAAATGT
GTTGACGATAATCAAGTAAATTGTCTTCCATCGCTTTGTATCCCTGTACA
TCTTCCTGAACTCTCATATTAATACCTGCTGGGTACACTTAAGATTGTTA
TGAATCCTAATCTGTGAACAATTGATAGCTTGTCATGTTTTTATGCTGTA
TATGATAATAAATAATATGTATGTTCAATATAGCATTTCTTTACAAGTTC
TTCTGTATTTTCAGTTTCCTCTTGGGCTGCTTTTCAAGAACGAGAGTATC
AGCTCGGATCTCGTTGACATTCTACAACACATGCAGAGAGAGTAAGTGTT
GTGCACATATGCTTACCTGTTACTGCAATGCTTACCTTCAGTTAGTCTAT
TGCTGTTTGGTCTTGAGGGATTAGCTGTTTGATCCATCCTCCAAGTCCAT
ATACGCTTGCAAAACTCTCATCAGTCTTTGTATCCCTCCACCAAATGGTT
AGGCAATCTATATTTTTCAAAACCAAACCTTTTTTATTATCCTTTGTGGA
TTGATTCCAACAAGTAATGCTGTCACATTATGTATATTGAGCCAGCGGTC
ACTACTGAGGATGTCACTCTGGCTACATCTTTCCAAAAATTTTCATAAAA
ATAGTCCTGACTGATGTCCAGGCAGATGGGGGACTTTTTTTTATATGGTT
TGCACATGTCTTAGATAGGTTCTCTATCTGCTTGGATATAGATCCAAAGC
CTTGTACATAAATAACTTAAATGATAGTACCAATGAATGTCATTCTTCTC
TTCAGGCAGAATCAATGATTCTCTGTGTAGGCATGAATAAGTACACACAA
GTAACAGTGTAGAAAATTAGTTTATTTCTTGTTTTATCTTCAGATATGTC
CCAAGAACACCAATGGGACTGCTCAGCGTTCCCGTCGGTGGAGACCGGTT
GACAGAAGGCAACAGCAGGGGTGTACAGTGGGCCTTTGGGAACGGCGAGA
CGCCTGAAGACAGACTTGAAG Coding sequence (CDS) from alignment at Sc0000059:797330..799750- >transcript:BL87217_cuf0 ID=transcript:BL87217_cuf0|Name=transcript:BL87217_cuf0|organism=Branchiostoma lanceolatum|type=CDS|length=4653bp|location=Sequence derived from alignment at Sc0000059:797330..799750- (Branchiostoma lanceolatum)
AGAAAAACAAGTACAGAAGACATGATGAACTTTTCCCTAGATGAACTCCA
TGCCGACTTAAAGCGACTGTCACCATTCCTTGCGTCCATCCTTAGTACAG
TGTCTAACAAGTCAAGAAACCACATATGTGCGAGTGCTGCAGTCGCCATA
CGAGGCCGGAACAACCACCTCTCAGCATTTGCCCACTACATCAACGCTGT
TCTGGAGTATGGAGGGGCAAAGACAGCTGTCTTCACTCGATTGTGTCAGT
TCGGCATCAGTACAACACAAGAAAATGCACGTATGAAGCAGAAAGAGTTG
GCCAGCACATGTGGAAGGGATTTACAAGCCATGAAGATGAGGTTGTCGGC
TTATGCTGTGGAAAAGGTGAAAGCATGTGTTGCAGATGGGAAGATGGACA
CGCATGCTGGAGATGGGAAGATGGACACGCATGCTGGAGATGGGAAGATG
GACACGCATGCTGGAGATGGGAAGATGGACACGCATGCTGGAGATGGGAA
GATGGACACGCATGCTGGAGATGGGAAGATGGACACGCATGCTGGAGATG
GGAAGATGGACACGCATGCTGGAGATGGGAAGATGGACACGCATGCTGGA
GATGGGAAGATGGACACGCATGCTGGAGATGGGAAGATGGACACGCATGC
TGGAGATGGGAAGATGGACACGCATGCTGGAGATGGGAAGATGGACACGC
ATGCTGGAGATGGGAAGATGGACACGCATGCTGGAGATGGGAAGATGGAC
ACGCATGCTGGAGATGGGAAGATGGACACGCATGCTGGAGATGGGAAGAT
GGACACGCATGCTGGAGATGGGAAGATGGACACGCATGCTGGAGATGGGA
AGATGGACACGCATGCTGACAGCTCTGATTACACACACATGTTCAACCAG
CTTACTCTCACGAGTGAAGATTTTAGTGATCTCGCAATCGGCTTCCTGAC
TCCTCCTACAGAACTTGAATCCACTCCACCACTTGAATCCACTCCACCAC
CGACCTACAGTATCATTTTCGACAACCTGGACTTTCACAAACAAACACAT
CACCAGTCAGAAACCAACCGCAACCAATCAATCCACTGGACTCACCACAT
CGCTGTTCAGGATCGGATTTCTACCCATCATCTCCCCAACAATGAACCTA
CTAAGCCCCTTCCACTCTTCCAAATAGGAGACTGTCTTCCCACACCAGAA
ATTGAAGCCCACATGCGTAATGAATCCATAATCCTGGGTAGCAGAATAAT
CACACAGCACATGCCAGCTTTCAAAAAGTTAGCACCTGTTGTGATTTACC
ATATACCACATGAGTACTCAGAGACCATGTCAGAGCAGTCAACTGAGTTT
CCTCTTGGGCTGCTTTTCAAGAACGAGAGTATCAGCTCGGATCTCGTTGA
CATTCTACAACACATGCAGAGAGAATATGTCCCAAGAACACCAATGGGAC
TGCTCAGCGTTCCCGTCGGTGGAGACCGGTTGACAGAAGGCAACAGCAGG
GGTGTACAGTGGGCCTTTGGGAACGGCGAGACGCCTGAAGACAGACTTGA
AAGAAAAACAAGTACAGAAGACATGATGAACTTTTCCCTAGATGAACTCC
ATGCCGACTTAAAGCGACTGTCACCATTCCTTGCGTCCATCCTTAGTACA
GTGTCTAACAAGTCAAGAAACCACATATGTGCGAGTGCTGCAGTCGCCAT
ACGAGGCCGGAACAACCACCTCTCAGCATTTGCCCACTACATCAACGCTG
TTCTGGAGTATGGAGGGGCAAAGACAGCTGTCTTCACTCGATTGTGTCAG
TTCGGCATCAGTACAACACAAGAAAATGCACGTATGAAGCAGAAAGAGTT
GGCCAGCACATGTGGAAGGGATTTACAAGCCATGAAGATGAGGTTGTCGG
CTTATGCTGTGGAAAAGGTGAAAGCATGTGTTGCAGATGGGAAGATGGAC
ACGCATGCTGGAGATGGGAAGATGGACACGCATGCTGGAGATGGGAAGAT
GGACACGCATGCTGGAGATGGGAAGATGGACACGCATGCTGGAGATGGGA
AGATGGACACGCATGCTGGAGATGGGAAGATGGACACGCATGCTGGAGAT
GGGAAGATGGACACGCATGCTGGAGATGGGAAGATGGACACGCATGCTGG
AGATGGGAAGATGGACACGCATGCTGGAGATGGGAAGATGGACACGCATG
CTGGAGATGGGAAGATGGACACGCATGCTGGAGATGGGAAGATGGACACG
CATGCTGGAGATGGGAAGATGGACACGCATGCTGGAGATGGGAAGATGGA
CACGCATGCTGGAGATGGGAAGATGGACACGCATGCTGGAGATGGGAAGA
TGGACACGCATGCTGGAGATGGGAAGATGGACACGCATGCTGGAGATGGG
AAGATGGACACGCATGCTGACAGCTCTGATTACACACACATGTTCAACCA
GCTTACTCTCACGAGTGAAGATTTTAGTGATCTCGCAATCGGCTTCCTGA
CTCCTCCTACAGAACTTGAATCCACTCCACCACTTGAATCCACTCCACCA
CCGACCTACAGTATCATTTTCGACAACCTGGACTTTCACAAACAAACACA
TCACCAGTCAGAAACCAACCGCAACCAATCAATCCACTGGACTCACCACA
TCGCTGTTCAGGATCGGATTTCTACCCATCATCTCCCCAACAATGAACCT
ACTAAGCCCCTTCCACTCTTCCAAATAGGAGACTGTCTTCCCACACCAGA
AATTGAAGCCCACATGCGTAATGAATCCATAATCCTGGGTAGCAGAATAA
TCACACAGCACATGCCAGCTTTCAAAAAGTTAGCACCTGTTGTGATTTAC
CATATACCACATGAGTACTCAGAGACCATGTCAGAGCAGTCAACTGAGTT
TCCTCTTGGGCTGCTTTTCAAGAACGAGAGTATCAGCTCGGATCTCGTTG
ACATTCTACAACACATGCAGAGAGAATATGTCCCAAGAACACCAATGGGA
CTGCTCAGCGTTCCCGTCGGTGGAGACCGGTTGACAGAAGGCAACAGCAG
GGGTGTACAGTGGGCCTTTGGGAACGGCGAGACGCCTGAAGACAGACTTG
AAAGAAAAACAAGTACAGAAGACATGATGAACTTTTCCCTAGATGAACTC
CATGCCGACTTAAAGCGACTGTCACCATTCCTTGCGTCCATCCTTAGTAC
AGTGTCTAACAAGTCAAGAAACCACATATGTGCGAGTGCTGCAGTCGCCA
TACGAGGCCGGAACAACCACCTCTCAGCATTTGCCCACTACATCAACGCT
GTTCTGGAGTATGGAGGGGCAAAGACAGCTGTCTTCACTCGATTGTGTCA
GTTCGGCATCAGTACAACACAAGAAAATGCACGTATGAAGCAGAAAGAGT
TGGCCAGCACATGTGGAAGGGATTTACAAGCCATGAAGATGAGGTTGTCG
GCTTATGCTGTGGAAAAGGTGAAAGCATGTGTTGCAGATGGGAAGATGGA
CACGCATGCTGGAGATGGGAAGATGGACACGCATGCTGGAGATGGGAAGA
TGGACACGCATGCTGGAGATGGGAAGATGGACACGCATGCTGGAGATGGG
AAGATGGACACGCATGCTGGAGATGGGAAGATGGACACGCATGCTGGAGA
TGGGAAGATGGACACGCATGCTGGAGATGGGAAGATGGACACGCATGCTG
GAGATGGGAAGATGGACACGCATGCTGGAGATGGGAAGATGGACACGCAT
GCTGGAGATGGGAAGATGGACACGCATGCTGGAGATGGGAAGATGGACAC
GCATGCTGGAGATGGGAAGATGGACACGCATGCTGGAGATGGGAAGATGG
ACACGCATGCTGGAGATGGGAAGATGGACACGCATGCTGGAGATGGGAAG
ATGGACACGCATGCTGGAGATGGGAAGATGGACACGCATGCTGGAGATGG
GAAGATGGACACGCATGCTGACAGCTCTGATTACACACACATGTTCAACC
AGCTTACTCTCACGAGTGAAGATTTTAGTGATCTCGCAATCGGCTTCCTG
ACTCCTCCTACAGAACTTGAATCCACTCCACCACTTGAATCCACTCCACC
ACCGACCTACAGTATCATTTTCGACAACCTGGACTTTCACAAACAAACAC
ATCACCAGTCAGAAACCAACCGCAACCAATCAATCCACTGGACTCACCAC
ATCGCTGTTCAGGATCGGATTTCTACCCATCATCTCCCCAACAATGAACC
TACTAAGCCCCTTCCACTCTTCCAAATAGGAGACTGTCTTCCCACACCAG
AAATTGAAGCCCACATGCGTAATGAATCCATAATCCTGGGTAGCAGAATA
ATCACACAGCACATGCCAGCTTTCAAAAAGTTAGCACCTGTTGTGATTTA
CCATATACCACATGAGTACTCAGAGACCATGTCAGAGCAGTCAACTGAGT
TTCCTCTTGGGCTGCTTTTCAAGAACGAGAGTATCAGCTCGGATCTCGTT
GACATTCTACAACACATGCAGAGAGAATATGTCCCAAGAACACCAATGGG
ACTGCTCAGCGTTCCCGTCGGTGGAGACCGGTTGACAGAAGGCAACAGCA
GGGGTGTACAGTGGGCCTTTGGGAACGGCGAGACGCCTGAAGACAGACTT
GAA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000059 | genome | Sc0000059:797330..799750 - |
Properties
| Property Name | Value |
|---|
| Transcript id | BL87217_cuf0 |
| Biotype | protein_coding |
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