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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL87152_cuf2 >transcript:BL87152_cuf2-protein ID=transcript:BL87152_cuf2-protein|Name=transcript:BL87152_cuf2|organism=Branchiostoma lanceolatum|type=polypeptide|length=471bp
HNHTLHSENVDTTRTDDTDSLQKSLEERNRESDVLPTDDDDDDDEFAACF
EGIPSQSSSKAGYHDKTIHKESAVTGPSRKSDMTREGFEQLLKNKLKESR
DSRKLQIRSRHLGLVDFLPSESNPLLQLENLDSHISSKKTDDYPKQSEVP
QAKEKSSGLTRLSQGLSHGRHVEMQLACEVFQQILEERQEEISPGDIDIT
HTNTCLVSGVGQKHSCVADGVVVKVGADQLASIVRGKNKQRNILIINGDI
TENFHHKGYKNALEVSSVSYGAGYGSYKVPKSWLERVRKVILDCDVGLLV
AKGIVDQDVMDVCMSVNCVVVQEVKYSTLQTLADATGAIILTYVHSTTSQ
DVGAVTSVGLLENHAFQSDKGASVLIKIGTPERTWSVVLCSLTKAELHDV
EQHFWSCLNRLKNVLSERKVLPGGGSPELTCIRCLRDTTGADLPLASFHP
RSWLSSCFHQFSGLFIACRKL Run BLAST on NCBI mRNA from alignment at Sc0000018:3095713..3100262+ Legend: exonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL87152_cuf2 ID=transcript:BL87152_cuf2|Name=transcript:BL87152_cuf2|organism=Branchiostoma lanceolatum|type=mRNA|length=4550bp|location=Sequence derived from alignment at Sc0000018:3095713..3100262+ (Branchiostoma lanceolatum)
CACAATCACACACTCCATTCTGAAAATGTAGATACTACCAGAACTGATGA
CACAGACTCACTACAAAAATCATTGGAAGAAAGGAATCGAGAAAGCGATG
TGTTGCCTACTGATGATGATGACGATGATGATGAATTTGCTGCTTGTTTT
GAAGGAATCCCATCACAATCTTCAAGTAAAGCTGGTTATCATGACAAAAC
TATTCACAAAGAATCTGCTGTAACTGGGCCATCAAGGAAATCTGACATGA
CAAGGGAAGGTTTTGAGCAGCTTTTGAAAAACAAGCTAAAGGAATCAAGA
GACTCTAGAAAACTGCAGATAAGAAGTCGACACCTTGGACTTGTAGATTT
TTTACCATCAGAGTCAAATCCTCTTTTGCAACTTGAAAATCTTGATTCTC
ACATCTCTTCAAAGAAAACAGACGACTATCCCAAACAAAGTGAAGTGCCT
CAAGCCAAAGAGAAGTCTTCAGGACTGACAAGATTATCACAGGGTTTGAG
TCATGGAAGACATGTTGAAATGCAGTTGGCATGTGAAGTGTTTCAGCAGA
TACTGGAGGAAAGGCAAGAAGAAATCTCACCTGGAGACATAGATATAACT
CATACAAACACCTGTCTTGTCAGTGGAGTTGGTCAAAAACATTCCTGTGT
TGCTGACGGAGTTGTTGTCAAAGTGGGTGCAGATCAATTAGCATCTATTG
TCCGAGGGAAGAACAAACAGCGGAACATCTTGATTATAAATGGAGACATT
ACGGAGAACTTTCACCACAAAGGGTACAAGAACGCTCTGGAAGTTTCAAG
TGTTTCGTACGGTGCAGGATATGGATCATATAAAGTTCCAAAATCGTGGC
TAGAGAGAGTCCGGAAGGTTATACTAGACTGTGACGTAGGGCTACTTGTT
GCAAAAGGCATCGTGGACCAAGATGTAATGGATGTTTGCATGTCTGTAAA
CTGTGTGGTGGTTCAAGAAGTGAAATATTCCACATTGCAGACTTTAGCTG
ATGCCACAGGAGCCATCATCCTAACCTATGTACACAGCACAACAAGTCAG
GACGTGGGGGCTGTGACGTCTGTGGGACTCTTGGAAAACCACGCATTCCA
GAGTGACAAGGGAGCGTCGGTGTTGATTAAGATTGGCACCCCGGAACGGA
CGTGGAGCGTCGTTCTCTGTAGCCTGACTAAAGCAGAACTGCACGATGTG
GAGCAGCACTTTTGGAGCTGCCTTAATAGGTAATGTGTAGTCTCTACTGT
ATGATGGCAATATGTTTTGATAGAGGCTACACCTTAATTGTCCATATTGT
AAGATATAACCCAAGAATGTTAAGGTGGAAACTTTGCTATCCCAAACAAG
ACCACAAAAATATGGAATGAATACATTAAATGACTTAATTAAAAAGGGGG
AATACAATGTACAATGAACCAGGTATAAAACCTGGTTCTCCCAACTATTT
CCTTTGTCACTGACGAAAGATAGCGGATGCTGTCTGAAACGTCTGACTGT
TTCAAAATTTTATCCAGTTGTTTGAGTAACTATTTTTGGCATATCTTATT
ACCTGGATGTCTAACTGTCATCAATGTACTGTGCATATTTCTTTAATGAT
ATGTAATTTTTCAGGTTGAAGAATGTGTTGTCTGAAAGGAAGGTGCTTCC
AGGTGGCGGCTCACCTGAACTCACCTGTATCAGGTGTCTCAGGGATACAA
CAGGTGCAGATCTTCCTCTGGCCAGCTTTCATCCGAGGTCTTGGCTGTCA
TCTTGCTTTCATCAGTTCAGGTATGTTAGATAGAACTTAAAAGTCTTTGA
GGAATGAGTTTTGAGATGTGACTATGAAACATCATGTCACATTTCAATGA
ATATGAGAAATTTCCTTGATCATTCAGAAGGTGTTGTTTACTGTATTGCA
TGTATTTCTTGTTTTAAAAAGTACAAATTGGACATGTCTCTTTGTTCATA
GGCTAGTGGTCTTTTCATCGCTTGCAGAAAGCTTTGAGCAGTACTTGTTG
TCAGTCATGGTCAACTCTGGACAGTTGTCATCTCTACATCACGCCAGGGC
TGAACTGGAGTCTTTACTTGAGGGAAAGCAAGAAAATAATGTTTCCTCGG
AAAGGGTTTTAGATCGAACTTCAAAAACTGCATCAAACGAACTTGAAAGT
TTCAGTCTGCATCAACCAGTTTCGGTCTGTATCAACCAGTCAACAATGCG
TGAGATGCCCATGAAAGAAGATGCTAGACTTTATTTGGGAGGTAAGGGAG
GAACACAATTCTTACCAAAACCTGTTGAAGACGGTAAACTAGAAGAATCT
AGATCAGAAATGCAGACAAGCTCTGTATGTTGTGGGAGTCTGTCCATGGA
TGCAGGTACAGATATTGATGGTGAAGTACTGGACTGTATGTGTAAGCTAG
AGGCATGGAGAAGTGCTGCATCGCTAGTGCAGTTGGTACTTAGGACAGAT
GCAGAAATCATCAATGGGGCTGAGGACGATTTTTATAAAGTCTTGTAGAA
CAACATGGCAACCTGAACCACGAAATCCAATTCATAAACCTCAAACAGAA
CAGTTTTGATGGAATATTTTACATGAGGCTTTCAAAATTGTCTCCTGGCT
GACCAGTAATATTACTTCTCTAAAAAAGAATACCGGTACGAGTAACCAGT
TCTGTTGCAATAGTGCCACCTTGCAGAATGTTGTAAAACTGCACCCTTCT
TTACTCTAGCATTTGTATCACCTTTCAGAATGGCATCAAACTGCATGTCC
ATTTGCACCGAATAAGATTCTAATGTCAATATTTTGCTGTAAGAACATGT
CATTGTGCTGTTCAGACTGCCTTCCATAGAAGTTAGAAGATGCAGAAGTT
ATATAAACCTATCATCATTATATCAGACTTTTCGTCTTCTCCAGTAGCCT
CTGTCTTTCATGTCCTGCTCAAGCTTTTATTTCCAGTGTCAGATGGTTGG
GTTACTTGGGTACAGTGCAACATTTTGACATGAATCCTTGCTCAAATAGT
CCTCAATAGTTGAAAACTATCATCAGATTAATTATGTGCTTTGGTCACTT
TTCCCGGCAATCAAAATGTCAAGAGAAAGGGTGCAAGAGATGGGACTCTT
TGCTCAAATGGTCCTCAATTTGAGCCACTACTACAGAGGCTTTGAGTTTC
TTTAATATGCCTGGTGCCTCTGTAATCTTCTGGATCCCAGATTACAGACT
GCAGTAAGCTTTCTCCTGCTCTGTAATCTACTTCCTGCAGGTGTGGTTTT
ACTATGTCCAGGTGGGTTTTCTCCTTACACCGTCCTTGCTGTTTTACTCC
TCCCTTTCAAACATCAAAAGTGTAACAGTCGCAACTCTAATTGGTTGTAA
AATGGACCCAACCATCCACCCATCTGGGAAGAGCCTGCTATCAGGCTAGC
CATGTGTATGATTTGCTGACCCGGCTTCTTTGTAGTTGTTGAATGACATA
CCTCCCTAATAAGCCGTACGTTCTTTTGTGTTAGGAACAGTAAAAGAGTC
ATTCAATCAAAGCTAATTTTGCCCTGGAGATGTTGAAAATTGAGCTGGGC
AATGTTTCTTGTGTTAGTTCTTTGTTGTGTCCACTGTGTTAATGATGTGC
TAAGGGAAGAACATTACCCTCTTTGGTATAATTAAGACCTTTTTCAATCT
CCAGCATGTAATTGACAAGTCGTTTCTCCTGTTAGGTAAAAGACATTGTA
GGCCCCTTTGCCCTTAGACTTTTTAGCTGACCAAAGAACATGTTGTAACT
TGATAGTNATAACTTGAAAGTCCATCTAAAAGTAAAAACACACTGTTATT
TTGTGTACTTTACTAATCTTGGGAATACAACACAAAAGTTAACGCTGTCA
TAAACCAGTCTTACACAACTATGAAAACACTCTGCTGTTTACAAAATATT
AGTCAACTTTTGACCTTCCTTAATTAATGAAGGAAGGAAAATCTGTCCTG
TTGTAGTGAGGTTGACAAGAGGTTTTCTAATTTTTCTGTCCTTTTTGTTT
GTATTGTTGTTGTTTTTTTATTCATGACCGTTTTTTCGTTTTAGATCAAG
GCAATATTTTATTGGAAGATTGATATGGAGAATTCTCCTTTTCAAAATTA
TGGTCCGGCTAGAATACTGATGTAGCTATATATGACACAACTGTCGCCCG
TTAGGAGTAGTTATCAATGCACCAAACAAAAGCAGTTGCTTAGTGGATTT
TTTAGCAGATTCTTCTACACTCTCATTACTTGTTCTTTCTCCTCTGTTCT
TTTCTTGCATTTATTGCTCTGTTTGAGGTCAAGAAGAGTTCAGGACTTCC
CGTCTGGTGGTCAGCCTGGGGTCAGTAGGCGAACATAAACATCAGTTGGT
TTATTCACACAACTGGCCATAAAAGTCAGCTGGCCTGTTGTCCTCAGTAC
TCCCTCACTCCAGGTGATATATGACCTCAATTCAGCCAATTAGCATGTCT
GTTTGATGTGATGTTTATGTGTTAGGGGAGTGGTGAAGGGTGTTTAAACT
GAAGTGTTTGGTCTCTCACAGTCAACACTCCCATCTGTCCATAGATGACT
Coding sequence (CDS) from alignment at Sc0000018:3095713..3100262+ >transcript:BL87152_cuf2 ID=transcript:BL87152_cuf2|Name=transcript:BL87152_cuf2|organism=Branchiostoma lanceolatum|type=CDS|length=4248bp|location=Sequence derived from alignment at Sc0000018:3095713..3100262+ (Branchiostoma lanceolatum)
CACAATCACACACTCCATTCTGAAAATGTAGATACTACCAGAACTGATGA
CACAGACTCACTACAAAAATCATTGGAAGAAAGGAATCGAGAAAGCGATG
TGTTGCCTACTGATGATGATGACGATGATGATGAATTTGCTGCTTGTTTT
GAAGGAATCCCATCACAATCTTCAAGTAAAGCTGGTTATCATGACAAAAC
TATTCACAAAGAATCTGCTGTAACTGGGCCATCAAGGAAATCTGACATGA
CAAGGGAAGGTTTTGAGCAGCTTTTGAAAAACAAGCTAAAGGAATCAAGA
GACTCTAGAAAACTGCAGATAAGAAGTCGACACCTTGGACTTGTAGATTT
TTTACCATCAGAGTCAAATCCTCTTTTGCAACTTGAAAATCTTGATTCTC
ACATCTCTTCAAAGAAAACAGACGACTATCCCAAACAAAGTGAAGTGCCT
CAAGCCAAAGAGAAGTCTTCAGGACTGACAAGATTATCACAGGGTTTGAG
TCATGGAAGACATGTTGAAATGCAGTTGGCATGTGAAGTGTTTCAGCAGA
TACTGGAGGAAAGGCAAGAAGAAATCTCACCTGGAGACATAGATATAACT
CATACAAACACCTGTCTTGTCAGTGGAGTTGGTCAAAAACATTCCTGTGT
TGCTGACGGAGTTGTTGTCAAAGTGGGTGCAGATCAATTAGCATCTATTG
TCCGAGGGAAGAACAAACAGCGGAACATCTTGATTATAAATGGAGACATT
ACGGAGAACTTTCACCACAAAGGGTACAAGAACGCTCTGGAAGTTTCAAG
TGTTTCGTACGGTGCAGGATATGGATCATATAAAGTTCCAAAATCGTGGC
TAGAGAGAGTCCGGAAGGTTATACTAGACTGTGACGTAGGGCTACTTGTT
GCAAAAGGCATCGTGGACCAAGATGTAATGGATGTTTGCATGTCTGTAAA
CTGTGTGGTGGTTCAAGAAGTGAAATATTCCACATTGCAGACTTTAGCTG
ATGCCACAGGAGCCATCATCCTAACCTATGTACACAGCACAACAAGTCAG
GACGTGGGGGCTGTGACGTCTGTGGGACTCTTGGAAAACCACGCATTCCA
GAGTGACAAGGGAGCGTCGGTGTTGATTAAGATTGGCACCCCGGAACGGA
CGTGGAGCGTCGTTCTCTGTAGCCTGACTAAAGCAGAACTGCACGATGTG
GAGCAGCACTTTTGGAGCTGCCTTAATAGGTTGAAGAATGTGTTGTCTGA
AAGGAAGGTGCTTCCAGGTGGCGGCTCACCTGAACTCACCTGTATCAGGT
GTCTCAGGGATACAACAGGTGCAGATCTTCCTCTGGCCAGCTTTCATCCG
AGGTCTTGGCTGTCATCTTGCTTTCATCAGTTCAGTGGTCTTTTCATCGC
TTGCAGAAAGCTTTGACACAATCACACACTCCATTCTGAAAATGTAGATA
CTACCAGAACTGATGACACAGACTCACTACAAAAATCATTGGAAGAAAGG
AATCGAGAAAGCGATGTGTTGCCTACTGATGATGATGACGATGATGATGA
ATTTGCTGCTTGTTTTGAAGGAATCCCATCACAATCTTCAAGTAAAGCTG
GTTATCATGACAAAACTATTCACAAAGAATCTGCTGTAACTGGGCCATCA
AGGAAATCTGACATGACAAGGGAAGGTTTTGAGCAGCTTTTGAAAAACAA
GCTAAAGGAATCAAGAGACTCTAGAAAACTGCAGATAAGAAGTCGACACC
TTGGACTTGTAGATTTTTTACCATCAGAGTCAAATCCTCTTTTGCAACTT
GAAAATCTTGATTCTCACATCTCTTCAAAGAAAACAGACGACTATCCCAA
ACAAAGTGAAGTGCCTCAAGCCAAAGAGAAGTCTTCAGGACTGACAAGAT
TATCACAGGGTTTGAGTCATGGAAGACATGTTGAAATGCAGTTGGCATGT
GAAGTGTTTCAGCAGATACTGGAGGAAAGGCAAGAAGAAATCTCACCTGG
AGACATAGATATAACTCATACAAACACCTGTCTTGTCAGTGGAGTTGGTC
AAAAACATTCCTGTGTTGCTGACGGAGTTGTTGTCAAAGTGGGTGCAGAT
CAATTAGCATCTATTGTCCGAGGGAAGAACAAACAGCGGAACATCTTGAT
TATAAATGGAGACATTACGGAGAACTTTCACCACAAAGGGTACAAGAACG
CTCTGGAAGTTTCAAGTGTTTCGTACGGTGCAGGATATGGATCATATAAA
GTTCCAAAATCGTGGCTAGAGAGAGTCCGGAAGGTTATACTAGACTGTGA
CGTAGGGCTACTTGTTGCAAAAGGCATCGTGGACCAAGATGTAATGGATG
TTTGCATGTCTGTAAACTGTGTGGTGGTTCAAGAAGTGAAATATTCCACA
TTGCAGACTTTAGCTGATGCCACAGGAGCCATCATCCTAACCTATGTACA
CAGCACAACAAGTCAGGACGTGGGGGCTGTGACGTCTGTGGGACTCTTGG
AAAACCACGCATTCCAGAGTGACAAGGGAGCGTCGGTGTTGATTAAGATT
GGCACCCCGGAACGGACGTGGAGCGTCGTTCTCTGTAGCCTGACTAAAGC
AGAACTGCACGATGTGGAGCAGCACTTTTGGAGCTGCCTTAATAGGTTGA
AGAATGTGTTGTCTGAAAGGAAGGTGCTTCCAGGTGGCGGCTCACCTGAA
CTCACCTGTATCAGGTGTCTCAGGGATACAACAGGTGCAGATCTTCCTCT
GGCCAGCTTTCATCCGAGGTCTTGGCTGTCATCTTGCTTTCATCAGTTCA
GTGGTCTTTTCATCGCTTGCAGAAAGCTTTGACACAATCACACACTCCAT
TCTGAAAATGTAGATACTACCAGAACTGATGACACAGACTCACTACAAAA
ATCATTGGAAGAAAGGAATCGAGAAAGCGATGTGTTGCCTACTGATGATG
ATGACGATGATGATGAATTTGCTGCTTGTTTTGAAGGAATCCCATCACAA
TCTTCAAGTAAAGCTGGTTATCATGACAAAACTATTCACAAAGAATCTGC
TGTAACTGGGCCATCAAGGAAATCTGACATGACAAGGGAAGGTTTTGAGC
AGCTTTTGAAAAACAAGCTAAAGGAATCAAGAGACTCTAGAAAACTGCAG
ATAAGAAGTCGACACCTTGGACTTGTAGATTTTTTACCATCAGAGTCAAA
TCCTCTTTTGCAACTTGAAAATCTTGATTCTCACATCTCTTCAAAGAAAA
CAGACGACTATCCCAAACAAAGTGAAGTGCCTCAAGCCAAAGAGAAGTCT
TCAGGACTGACAAGATTATCACAGGGTTTGAGTCATGGAAGACATGTTGA
AATGCAGTTGGCATGTGAAGTGTTTCAGCAGATACTGGAGGAAAGGCAAG
AAGAAATCTCACCTGGAGACATAGATATAACTCATACAAACACCTGTCTT
GTCAGTGGAGTTGGTCAAAAACATTCCTGTGTTGCTGACGGAGTTGTTGT
CAAAGTGGGTGCAGATCAATTAGCATCTATTGTCCGAGGGAAGAACAAAC
AGCGGAACATCTTGATTATAAATGGAGACATTACGGAGAACTTTCACCAC
AAAGGGTACAAGAACGCTCTGGAAGTTTCAAGTGTTTCGTACGGTGCAGG
ATATGGATCATATAAAGTTCCAAAATCGTGGCTAGAGAGAGTCCGGAAGG
TTATACTAGACTGTGACGTAGGGCTACTTGTTGCAAAAGGCATCGTGGAC
CAAGATGTAATGGATGTTTGCATGTCTGTAAACTGTGTGGTGGTTCAAGA
AGTGAAATATTCCACATTGCAGACTTTAGCTGATGCCACAGGAGCCATCA
TCCTAACCTATGTACACAGCACAACAAGTCAGGACGTGGGGGCTGTGACG
TCTGTGGGACTCTTGGAAAACCACGCATTCCAGAGTGACAAGGGAGCGTC
GGTGTTGATTAAGATTGGCACCCCGGAACGGACGTGGAGCGTCGTTCTCT
GTAGCCTGACTAAAGCAGAACTGCACGATGTGGAGCAGCACTTTTGGAGC
TGCCTTAATAGGTTGAAGAATGTGTTGTCTGAAAGGAAGGTGCTTCCAGG
TGGCGGCTCACCTGAACTCACCTGTATCAGGTGTCTCAGGGATACAACAG
GTGCAGATCTTCCTCTGGCCAGCTTTCATCCGAGGTCTTGGCTGTCATCT
TGCTTTCATCAGTTCAGTGGTCTTTTCATCGCTTGCAGAAAGCTTTGA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| Sc0000018 | genome | Sc0000018:3095713..3100262 + |
Properties
| Property Name | Value |
|---|
| Transcript id | BL87152_cuf2 |
| Biotype | protein_coding |
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