transcript:BL87125_cuf0 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL87125_cuf0
Unique Nametranscript:BL87125_cuf0
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



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Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL87125_cuf0

>transcript:BL87125_cuf0-protein ID=transcript:BL87125_cuf0-protein|Name=transcript:BL87125_cuf0|organism=Branchiostoma lanceolatum|type=polypeptide|length=152bp
PSHTEHTERYSNGSETGLINSGHERSENKKCEETPLAPCQPTPDQACENV
MSFLPDYDSRIYCKRYLCDVCGFKTLSASSFSRHRRRHKGEKPFVCGECG
YRAYDNQKLGKHMRTHTGEKPFKCNQCDFKTSHQSGLVQHMKIHAGVKPY
KC
Run BLAST on NCBI

mRNA from alignment at xpSc0039679:13797..14255-

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL87125_cuf0 ID=transcript:BL87125_cuf0|Name=transcript:BL87125_cuf0|organism=Branchiostoma lanceolatum|type=mRNA|length=459bp|location=Sequence derived from alignment at xpSc0039679:13797..14255- (Branchiostoma lanceolatum)
AACCGTCCCACACGGAACATACTGAGCGTTACAGCAACGGTAGTGAGACT
GGTTTAATCAACAGCGGACATGAACGAAGTGAAAATAAGAAATGCGAGGA
AACACCTTTGGCCCCTTGTCAACCGACTCCTGACCAGGCTTGTGAGAACG
TGATGTCCTTTCTTCCTGACTATGACTCACGGATCTATTGCAAACGTTAC
TTGTGTGACGTGTGCGGATTCAAAACGTTGAGCGCAAGCAGTTTCTCTAG
GCATAGACGACGTCACAAAGGAGAAAAACCTTTCGTGTGCGGCGAATGTG
GTTACAGGGCATATGATAATCAAAAGCTTGGCAAACACATGAGAACACAC
ACTGGTGAAAAACCGTTTAAGTGTAATCAATGTGACTTCAAGACGTCACA
TCAAAGCGGGCTAGTCCAACATATGAAAATACACGCTGGTGTGAAACCAT
ACAAATGTG

Coding sequence (CDS) from alignment at xpSc0039679:13797..14255-

>transcript:BL87125_cuf0 ID=transcript:BL87125_cuf0|Name=transcript:BL87125_cuf0|organism=Branchiostoma lanceolatum|type=CDS|length=456bp|location=Sequence derived from alignment at xpSc0039679:13797..14255- (Branchiostoma lanceolatum)
CCGTCCCACACGGAACATACTGAGCGTTACAGCAACGGTAGTGAGACTGG
TTTAATCAACAGCGGACATGAACGAAGTGAAAATAAGAAATGCGAGGAAA
CACCTTTGGCCCCTTGTCAACCGACTCCTGACCAGGCTTGTGAGAACGTG
ATGTCCTTTCTTCCTGACTATGACTCACGGATCTATTGCAAACGTTACTT
GTGTGACGTGTGCGGATTCAAAACGTTGAGCGCAAGCAGTTTCTCTAGGC
ATAGACGACGTCACAAAGGAGAAAAACCTTTCGTGTGCGGCGAATGTGGT
TACAGGGCATATGATAATCAAAAGCTTGGCAAACACATGAGAACACACAC
TGGTGAAAAACCGTTTAAGTGTAATCAATGTGACTTCAAGACGTCACATC
AAAGCGGGCTAGTCCAACATATGAAAATACACGCTGGTGTGAAACCATAC
AAATGT
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL87125gene:BL87125Branchiostoma lanceolatumgene
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL87125_cuf0-E1BL87125_cuf0-E1-1564476830-551852Branchiostoma lanceolatumexon
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL87125_cuf0transcript:BL87125_cuf0-proteinBranchiostoma lanceolatumpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
xpSc0039679genomexpSc0039679:13797..14255 -
Properties
Property NameValue
Transcript idBL87125_cuf0
Biotypeprotein_coding