|
|
Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL86541_cuf3 >transcript:BL86541_cuf3-protein ID=transcript:BL86541_cuf3-protein|Name=transcript:BL86541_cuf3|organism=Branchiostoma lanceolatum|type=polypeptide|length=505bp
TLFTYDVISHQNEAWHARAHRKDRTIMSAFHCCVPSCVGDSRYNTGRELT
FHRIPHDADQRKAWIVKIRRDVGKRFKISASTRVCSAHFRAEDFLRTLNG
LTRLRPGAVPSVFDWTEPAAERRTLRRTNDVAPDGVGSTSQEAPIEQLGS
SADPTPSPSADHDYGSQPLTTASKLEAAQAEIARLQGQVMELEKEKFFLE
RFSSDQQSISFYTGFKNYETLLSLFTSLQPTANTMIRWTQMQRHSSNINN
VKISAFNESSLPLIDQFFMFLCRVRRGFPEKDLAVRFGLSQSSVSRILLT
WANYLYFMLGSLQIWPSRTVVDRNMPECFRKTYPMTRVVIDCTELKVQTP
SSKVLNSETYSQYKSHTTFKGLIGITPCGIVCFVSTLYTGCISDKEITRK
SGLVDLIEPGDSVMADKGFLIQDILDNKQATLVIPPFLGQKGKFSASEVS
QTHDIARLRIHVERAIRRIKEYHIFDGVVPLSLAASINHIWTICAILTNF
RGPLF Run BLAST on NCBI mRNA from alignment at Sc0000013:1574308..1577957- Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL86541_cuf3 ID=transcript:BL86541_cuf3|Name=transcript:BL86541_cuf3|organism=Branchiostoma lanceolatum|type=mRNA|length=3650bp|location=Sequence derived from alignment at Sc0000013:1574308..1577957- (Branchiostoma lanceolatum)
GACCCTATTCACGTATGACGTCATCTCGCACCAAAACGAGGCTTGGCACG
CAAGAGCGCACAGGAAGGATAGAACCATCATGTCCGCTTTTCATTGTTGT
GTGCCGTCCTGTGTCGGCGACAGCCGGTACAATACGGGGAGGGAACTTAC
GTTTCACAGGATTCCACATGACGCAGATCAGCGTAAGGCATGGATCGTCA
AGATCAGACGCGACGTTGGGAAACGCTTCAAGGTATTCTCCCGTTTTTTT
CGTAATGTTTTGATAGGTGTTACGTTACATGGGGGAGGGGCAGGGGCGGG
GCGGTAAACTCGGTGTGTCATTTTAGGTCCGCTGTGGGCAAGCCTGTGCC
GCAAAAATTTCAAACCTTTCTCTCAGAATATGTTCAGAGTAGTCTCCCAC
TTGTGATGCCTGAGTTTTAAGTCGATTCGTTGATCCGAAGTGACAAAAAT
ATAGATCGAAGTTTGTCTGTTTGTTTGGACCTTTGTTTACTTCCGTGTTT
TCACGGTCCATATGCAGCAATCCTATACCCCGAGGCCGAGTATTGTAACT
TTACCACGCAAAATATCGTTCGCGCAACCGGTGCTCAAAGATCCGCCACT
TCCATCATATTATTATTCAGGGAGATGGCCCTTGTATGTCTATGAATTTT
CCATGCTGTTTCAACATAATTTCTCTGGTGACTCATCTTCCAGAGTGACG
TGTATTGAACGTTAAAAGTGATTCAAAGTGGTTGCAGTATACTTAGGACA
TTCAATATTTACTAATCGGGCTACTAAGTCAATGAATGATGCATATATGT
ACTAAAATCATGTTTATTCATGTCTTTGAAGTTGTTTTATGACTAGGATC
CAATGAAGTGGTCTGAAATGTAGTCTTCAAACACTGAGGTTGAATTGGAA
GATTGTATTTGACCTTTTTCTGATTTGAGTCTTACAATCTAAAATGGTTT
CACAATACATGATCTAGTTAGTTACTAATGATCAGCTGTTATTGTGTTTC
TGATTGATCTGTTGAATGAAAACCAGAGTATGGTAACATATAGTGTGTAT
ATATCAATACAGTATCAATGATCACATACAATATCATCTTTTGCAATCAA
TTCCAGATATCTGCCTCAACTCGTGTGTGTTCAGCACATTTCCGAGCAGA
AGACTTTCTGCGAACGCTGAATGGGTTGACGAGACTGCGGCCAGGGGCTG
TGCCCTCAGTGTTTGATTGGACTGAACCTGCTGCTGAGCGGCGTACTCTT
AGGAGGACCAACGAGTAAGATTTATCTTATGTTGTGTGCTGACCCGTATT
GCTCATTTGTTTTACGGCAATAATTTCATTCAAACATGCCTACAGTAATT
GTTATTCACTGACAAGCAAAAATTGATCAAACTAAAACCTTCAAAGTAAT
GCAAAAACAGTATGAAATCTCAGAAATTAAGTCAAGGTTTTGGGTATGTT
TCCAATTTCTCATTTTGTATTTCAGTGTGGCTCCAGATGGAGTTGGTTCA
ACCAGTCAAGAAGCCCCAATTGAACAGCTGGGCTCAAGTGCTGATCCAAC
ACCATCACCATCAGCAGATCATGACTACGGATCACAGCCTTTGACAACAG
CTAGTAAGCTGGAGGCTGCACAGGCTGAAATTGCCAGGTTACAAGGGCAG
GTAATGGAGCTGGAGAAGGAGAAGTTTTTCCTGGAACGTTTTTCTTCAGA
CCAGCAATCTATTAGTTTTTACACTGGCTTTAAGAACTACGAAACATTGT
TAAGTCTATTTACATCATTACAACCAACAGCAAATACCATGATCAGGTGG
ACCCAAATGCAGAGACACTCATCCAATATCAACAATGTCAAAATATCTGC
TTTTAATGAATCTTCGCTCCCTCTGATTGATCAGTTCTTCATGTTCTTGT
GCCGTGTGAGGCGGGGGTTTCCTGAGAAGGATTTAGCGGTTAGATTTGGT
TTGTCCCAATCATCTGTAAGTAGGATATTGCTTACCTGGGCAAATTATTT
GTATTTCATGCTGGGTAGTCTGCAAATTTGGCCTTCCCGTACTGTTGTAG
ATAGAAATATGCCTGAATGTTTTCGTAAGACGTACCCCATGACAAGAGTT
GTAATTGATTGTACAGAGTTAAAGGTGCAGACTCCAAGCTCGAAAGTTCT
AAATTCTGAAACGTACTCTCAGTATAAAAGCCATACAACATTCAAGGGGC
TGATTGGGATTACGCCATGTGGTATTGTATGTTTTGTAAGCACATTATAT
ACTGGATGTATCTCTGACAAGGAAATCACACGTAAATCAGGGTTGGTGGA
CTTGATTGAGCCTGGTGATTCAGTAATGGCTGACAAGGGGTTTTTGATTC
AGGACATACTGGACAATAAACAAGCAACTCTAGTGATCCCACCATTCCTC
GGCCAGAAAGGGAAATTCAGTGCCAGTGAAGTCTCACAGACTCATGACAT
AGCCAGATTACGAATTCATGTGGAAAGAGCTATCAGAAGAATAAAGGAGT
ATCACATATTTGATGGTGTAGTGCCATTATCACTGGCTGCATCCATTAAC
CATATTTGGACCATATGTGCAATTCTAACAAATTTCCGGGGACCCTTATT
CTAATAATGTACTGTAACAATATGTAACAATACTAGTAACTTGAGCAATA
CATGTATTTACTTCAAAATATATGATTTTCTTCTGAAACCTCATATTTTG
GCACTGTAAGATGAAAAAAAAAATCATACATGAACAATTTTATGATTTTG
AAATCTTTCTAAAAGGTTTAAGAGAGTCTGTGAGGCCTCACTAGCACTTA
ATTTCCCTTTCTGGCCTAGGAATTGTGGGATCACTAAAGTTACTTGTAGT
ATGTACGACAATATGTAAAACTGAAATATTGTAACAGTTATATTATGATT
CATCCAACATGTAATAAACTACAAAATTAATATTATTACCACTTGATAGC
CATGATCTTACACTGTGATCAATGTTTTAAAGGTATGAAATGTGTCACTT
TATAGTCTGCTAGCTTGGATTCTGCACCTTTAACTCTATACTATGAAATA
TAACATGCCTCTATGTTTTTTTATACCAGTATTGCTTATATCAGAATTAG
CCTGAGTACCATCCTCCATAGTGACCGCTGGCTCAATGCTTTTCGCTTGC
TAATTTGTAGTTAGTAAGTGAAAAGCATTGAGCCATGGGTCACTACTGAG
GATGGTACTCAGATTACATCATTTTATGGTATGCTAGTTATTCTACTCAA
TATCAATATTTGATACTACTGCGTCTGCCACTTCCATTTTAGTGATTAGA
AACCCTGTAGTTGAGTCAAGTTAGTACCTGATCATGGTATTTGCTGTTGG
TTGTAATGTAAAAAGTATGAAGCATGGAATCAATTATTATCACTTAATAT
AAGTGCTGTATTTGTTCTCAAGTTATGTTGAGTTATAAATGTATGTCATA
GACATAAACAAATTGCATAATTCAACACACATGTCTTAAGGTAAAAACTG
ACATGTACAATATTAATCTATATCTAACAGGATCACATGTCATTCAAGCA
GATGTAATTAGAGTTATGAATCTTGACATCAACAAATTCCTTTACAACTG
CTTTGTACATATGACAAAATCCAGATTGCACTTCTGCAACATATGCTTGA
Coding sequence (CDS) from alignment at Sc0000013:1574308..1577957- >transcript:BL86541_cuf3 ID=transcript:BL86541_cuf3|Name=transcript:BL86541_cuf3|organism=Branchiostoma lanceolatum|type=CDS|length=4554bp|location=Sequence derived from alignment at Sc0000013:1574308..1577957- (Branchiostoma lanceolatum)
ACCCTATTCACGTATGACGTCATCTCGCACCAAAACGAGGCTTGGCACGC
AAGAGCGCACAGGAAGGATAGAACCATCATGTCCGCTTTTCATTGTTGTG
TGCCGTCCTGTGTCGGCGACAGCCGGTACAATACGGGGAGGGAACTTACG
TTTCACAGGATTCCACATGACGCAGATCAGCGTAAGGCATGGATCGTCAA
GATCAGACGCGACGTTGGGAAACGCTTCAAGATATCTGCCTCAACTCGTG
TGTGTTCAGCACATTTCCGAGCAGAAGACTTTCTGCGAACGCTGAATGGG
TTGACGAGACTGCGGCCAGGGGCTGTGCCCTCAGTGTTTGATTGGACTGA
ACCTGCTGCTGAGCGGCGTACTCTTAGGAGGACCAACGATGTGGCTCCAG
ATGGAGTTGGTTCAACCAGTCAAGAAGCCCCAATTGAACAGCTGGGCTCA
AGTGCTGATCCAACACCATCACCATCAGCAGATCATGACTACGGATCACA
GCCTTTGACAACAGCTAGTAAGCTGGAGGCTGCACAGGCTGAAATTGCCA
GGTTACAAGGGCAGGTAATGGAGCTGGAGAAGGAGAAGTTTTTCCTGGAA
CGTTTTTCTTCAGACCAGCAATCTATTAGTTTTTACACTGGCTTTAAGAA
CTACGAAACATTGTTAAGTCTATTTACATCATTACAACCAACAGCAAATA
CCATGATCAGGTGGACCCAAATGCAGAGACACTCATCCAATATCAACAAT
GTCAAAATATCTGCTTTTAATGAATCTTCGCTCCCTCTGATTGATCAGTT
CTTCATGTTCTTGTGCCGTGTGAGGCGGGGGTTTCCTGAGAAGGATTTAG
CGGTTAGATTTGGTTTGTCCCAATCATCTGTAAGTAGGATATTGCTTACC
TGGGCAAATTATTTGTATTTCATGCTGGGTAGTCTGCAAATTTGGCCTTC
CCGTACTGTTGTAGATAGAAATATGCCTGAATGTTTTCGTAAGACGTACC
CCATGACAAGAGTTGTAATTGATTGTACAGAGTTAAAGGTGCAGACTCCA
AGCTCGAAAGTTCTAAATTCTGAAACGTACTCTCAGTATAAAAGCCATAC
AACATTCAAGGGGCTGATTGGGATTACGCCATGTGGTATTGTATGTTTTG
TAAGCACATTATATACTGGATGTATCTCTGACAAGGAAATCACACGTAAA
TCAGGGTTGGTGGACTTGATTGAGCCTGGTGATTCAGTAATGGCTGACAA
GGGGTTTTTGATTCAGGACATACTGGACAATAAACAAGCAACTCTAGTGA
TCCCACCATTCCTCGGCCAGAAAGGGAAATTCAGTGCCAGTGAAGTCTCA
CAGACTCATGACATAGCCAGATTACGAATTCATGTGGAAAGAGCTATCAG
AAGAATAAAGGAGTATCACATATTTGATGGTGTAGTGCCATTATCACTGG
CTGCATCCATTAACCATATTTGGACCATATGTGCAATTCTAACAAATTTC
CGGGGACCCTTATTCTAAACCCTATTCACGTATGACGTCATCTCGCACCA
AAACGAGGCTTGGCACGCAAGAGCGCACAGGAAGGATAGAACCATCATGT
CCGCTTTTCATTGTTGTGTGCCGTCCTGTGTCGGCGACAGCCGGTACAAT
ACGGGGAGGGAACTTACGTTTCACAGGATTCCACATGACGCAGATCAGCG
TAAGGCATGGATCGTCAAGATCAGACGCGACGTTGGGAAACGCTTCAAGA
TATCTGCCTCAACTCGTGTGTGTTCAGCACATTTCCGAGCAGAAGACTTT
CTGCGAACGCTGAATGGGTTGACGAGACTGCGGCCAGGGGCTGTGCCCTC
AGTGTTTGATTGGACTGAACCTGCTGCTGAGCGGCGTACTCTTAGGAGGA
CCAACGATGTGGCTCCAGATGGAGTTGGTTCAACCAGTCAAGAAGCCCCA
ATTGAACAGCTGGGCTCAAGTGCTGATCCAACACCATCACCATCAGCAGA
TCATGACTACGGATCACAGCCTTTGACAACAGCTAGTAAGCTGGAGGCTG
CACAGGCTGAAATTGCCAGGTTACAAGGGCAGGTAATGGAGCTGGAGAAG
GAGAAGTTTTTCCTGGAACGTTTTTCTTCAGACCAGCAATCTATTAGTTT
TTACACTGGCTTTAAGAACTACGAAACATTGTTAAGTCTATTTACATCAT
TACAACCAACAGCAAATACCATGATCAGGTGGACCCAAATGCAGAGACAC
TCATCCAATATCAACAATGTCAAAATATCTGCTTTTAATGAATCTTCGCT
CCCTCTGATTGATCAGTTCTTCATGTTCTTGTGCCGTGTGAGGCGGGGGT
TTCCTGAGAAGGATTTAGCGGTTAGATTTGGTTTGTCCCAATCATCTGTA
AGTAGGATATTGCTTACCTGGGCAAATTATTTGTATTTCATGCTGGGTAG
TCTGCAAATTTGGCCTTCCCGTACTGTTGTAGATAGAAATATGCCTGAAT
GTTTTCGTAAGACGTACCCCATGACAAGAGTTGTAATTGATTGTACAGAG
TTAAAGGTGCAGACTCCAAGCTCGAAAGTTCTAAATTCTGAAACGTACTC
TCAGTATAAAAGCCATACAACATTCAAGGGGCTGATTGGGATTACGCCAT
GTGGTATTGTATGTTTTGTAAGCACATTATATACTGGATGTATCTCTGAC
AAGGAAATCACACGTAAATCAGGGTTGGTGGACTTGATTGAGCCTGGTGA
TTCAGTAATGGCTGACAAGGGGTTTTTGATTCAGGACATACTGGACAATA
AACAAGCAACTCTAGTGATCCCACCATTCCTCGGCCAGAAAGGGAAATTC
AGTGCCAGTGAAGTCTCACAGACTCATGACATAGCCAGATTACGAATTCA
TGTGGAAAGAGCTATCAGAAGAATAAAGGAGTATCACATATTTGATGGTG
TAGTGCCATTATCACTGGCTGCATCCATTAACCATATTTGGACCATATGT
GCAATTCTAACAAATTTCCGGGGACCCTTATTCTAAACCCTATTCACGTA
TGACGTCATCTCGCACCAAAACGAGGCTTGGCACGCAAGAGCGCACAGGA
AGGATAGAACCATCATGTCCGCTTTTCATTGTTGTGTGCCGTCCTGTGTC
GGCGACAGCCGGTACAATACGGGGAGGGAACTTACGTTTCACAGGATTCC
ACATGACGCAGATCAGCGTAAGGCATGGATCGTCAAGATCAGACGCGACG
TTGGGAAACGCTTCAAGATATCTGCCTCAACTCGTGTGTGTTCAGCACAT
TTCCGAGCAGAAGACTTTCTGCGAACGCTGAATGGGTTGACGAGACTGCG
GCCAGGGGCTGTGCCCTCAGTGTTTGATTGGACTGAACCTGCTGCTGAGC
GGCGTACTCTTAGGAGGACCAACGATGTGGCTCCAGATGGAGTTGGTTCA
ACCAGTCAAGAAGCCCCAATTGAACAGCTGGGCTCAAGTGCTGATCCAAC
ACCATCACCATCAGCAGATCATGACTACGGATCACAGCCTTTGACAACAG
CTAGTAAGCTGGAGGCTGCACAGGCTGAAATTGCCAGGTTACAAGGGCAG
GTAATGGAGCTGGAGAAGGAGAAGTTTTTCCTGGAACGTTTTTCTTCAGA
CCAGCAATCTATTAGTTTTTACACTGGCTTTAAGAACTACGAAACATTGT
TAAGTCTATTTACATCATTACAACCAACAGCAAATACCATGATCAGGTGG
ACCCAAATGCAGAGACACTCATCCAATATCAACAATGTCAAAATATCTGC
TTTTAATGAATCTTCGCTCCCTCTGATTGATCAGTTCTTCATGTTCTTGT
GCCGTGTGAGGCGGGGGTTTCCTGAGAAGGATTTAGCGGTTAGATTTGGT
TTGTCCCAATCATCTGTAAGTAGGATATTGCTTACCTGGGCAAATTATTT
GTATTTCATGCTGGGTAGTCTGCAAATTTGGCCTTCCCGTACTGTTGTAG
ATAGAAATATGCCTGAATGTTTTCGTAAGACGTACCCCATGACAAGAGTT
GTAATTGATTGTACAGAGTTAAAGGTGCAGACTCCAAGCTCGAAAGTTCT
AAATTCTGAAACGTACTCTCAGTATAAAAGCCATACAACATTCAAGGGGC
TGATTGGGATTACGCCATGTGGTATTGTATGTTTTGTAAGCACATTATAT
ACTGGATGTATCTCTGACAAGGAAATCACACGTAAATCAGGGTTGGTGGA
CTTGATTGAGCCTGGTGATTCAGTAATGGCTGACAAGGGGTTTTTGATTC
AGGACATACTGGACAATAAACAAGCAACTCTAGTGATCCCACCATTCCTC
GGCCAGAAAGGGAAATTCAGTGCCAGTGAAGTCTCACAGACTCATGACAT
AGCCAGATTACGAATTCATGTGGAAAGAGCTATCAGAAGAATAAAGGAGT
ATCACATATTTGATGGTGTAGTGCCATTATCACTGGCTGCATCCATTAAC
CATATTTGGACCATATGTGCAATTCTAACAAATTTCCGGGGACCCTTATT
CTAA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000013 | genome | Sc0000013:1574308..1577957 - |
Properties
| Property Name | Value |
|---|
| Transcript id | BL86541_cuf3 |
| Biotype | protein_coding |
|
