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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL86477_cuf1 >transcript:BL86477_cuf1-protein ID=transcript:BL86477_cuf1-protein|Name=transcript:BL86477_cuf1|organism=Branchiostoma lanceolatum|type=polypeptide|length=99bp
MLFTLQTIRHRVNAEKVVGEEDPPELKVERYHRPGAPCAGLMVYARLSDG
AWVACGWIREKDKDIVMNLSAGGSVESLTCVLQESYIKKGYHVIKVNIF Run BLAST on NCBI mRNA from alignment at Sc0000000:3476201..3482301- Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL86477_cuf1 ID=transcript:BL86477_cuf1|Name=transcript:BL86477_cuf1|organism=Branchiostoma lanceolatum|type=mRNA|length=6101bp|location=Sequence derived from alignment at Sc0000000:3476201..3482301- (Branchiostoma lanceolatum)
AAATAACGGAGGGGGCCCCAAATTCGCCACTTTTTTTCTAAATCACATTT
TTCAAATGTAAATTTTGTGAACCTGGTGATACCATGGGGCTATATTATAA
ATGCAGTTGTTAGACTTTTTACATACGTGTTGTCATGGTGATTGATCGAA
TATTAAGGTGAAAGGTCAATCGGTTGTTACGCGCCGTAATTGCGTTGTCT
TTTCCAGGGTGGTCCATAAATTCGCCACTTTTACAAGAAGTCAAGATTTG
CCCAAAATGTTGACTAAACCTGCTTTCCAGGCACTGGATTTTATTGCCAA
CGTTAAGGGGTTCCCTTTCTGTGGCAAGCAGGCAAATACTTTGTAGAGCG
TCGGAATGAAACACGCATTTTTGAATATGGTTAAGTCGGCTCTGCACAAC
ATGAACTTCTAGAGTTCTATGCAGAACGGCATGACGGAAATAGTATGTCG
GGACGATAGCAAACCTACATCAAACTTATCTAATCACCTGGAAGCCTGCA
CAGGAATTAATCCATAGAAGTGATACAGTTTTTTTCTTCATAATCCAGCC
TATTCTTACGGTTTCCAAGTTACGTTGTGTGCCCAAACGTTGGCGAGGAA
CGGGCCCATCCCTGCGGCCACGTCGCACAGTGACGTATTCTATACGCCGT
GATACGTCTATAAAGATGTTTATCCGGGGATATTTGCTACAAAAATGAGC
CGAGACACTACAAGCTTGTGCGACACGACGCACGATCATCCATTTACGAA
ACATATCGCACCCTCAGTCGATACGCGGTACGCCAATGCATTCACGATAG
CAGCGGCTACTGTAAGCTGCGGCCAAACAAACAGTCCGGGAAAACATCAT
CCTGCGGCAGATCCGTTCTCATGTTCAAATGCACGGTCGTGGCTACTAGT
ATCTTAAACCTTGAGATCGAATATTTGAGGGCCTGCTACAGCTATTAAAA
TGCGAGTAACACACGTTTGCACTACAGGCAGCCCGTCAAAATGTCCTACA
TGCAAACCACCAGGCACGTGATGACTCAGGTCATCGGCCTGTACCAAGAG
CAAACTGCACTGCTGTTGAGGGGAGTACGATGTTCGTTCACAGCTACCGT
CTTGTTGGGATGTTCGTTTTAGAAAGAAAAACATAACATGTGCATTAAGT
AAAGAATGAAAAAGCATTACTTTTATTACATTATAATTATTTTGTAATAT
AAGTGATGAAGGTCTGCATGCTTTTTTCACCCCCTAAAGCAGTTGGTTTC
ATCGACATTGCACTGAGTTTTGAATGTCTCGGGCATTCTAATGTTTTTAA
TATGGGGGACAAGTTATTTTTACCCTAGCCAATTAAAAGTCACATTTCGT
AATAAATATTACTTGCCATTATCTTAAACTAATTCATGAGCGTTTGATAT
AAAAAAAAGAAAGAAATATACACTTACTAAAGTGGAATAAATGAATACAA
CTTCACATACAATCTGGTACGGCCCACCTAGTTTCGCGCCATTTCAGTCA
GTGACCACTTCTCGTTTTCTGTCACTACTGTCACCTGTCGGAACTGACCG
TACAAACGCAGCAGAACTACGTGAGTATAAGTAACGGTGTATCTATTGTT
CAAGTGAGGCTAGTAAGGGACAGACCTGAAGCCAATATTCATTAACAACT
TCGAAAATTGGTGTAAAAACAGTGCGGCTTAACGTTGGATATTGATAACC
GTTCAATGTCAATGATACAACTTACGTTAGCTAACGTAACAACAGAAAAT
TACATCGTTGAAATTGCTTGGGATTTGACGTTCTTGTATGGGACATAAGA
ATTCATTTACATAGATTTTCTTAGCACAATTAACGCTGTTGTCTGAGTCT
CAAATAACGAGGGGAAACCTTTTCATCATCTACCGATTTCCTGTGACCAA
TGTTCTTTCATCTTTCTCGCAGGTAACCGTCAACAGCCACAGTAAACAGT
AGTATAGTAACACACCCCAACGAAGTGACTCTAGTAGCACAATGGTGAGT
CTCGATAATCGAGTTGCGACTTAATAAACACAATGGAATGTGACAAAATT
ATCATAAAACAAGAAACTGTGTAAACTGTATTGATGCAATACTAAGATTA
TCTATCTCTATCAACAGCTCTTCACGCTGCAGACCATTCGTCATCGGGTC
AATGCTGAGAAGGTGGTAGGAGAGGAAGATCCTCCAGAGCTGAAGGTGGA
GCGGTACCACCGTCCGGGAGCCCCGTGTGCAGGCCTGATGGTCTACGCCA
GACTGTCGGACGGTGCCTGGGTCGCGTGTGGCTGGATAAGGGAGAAGGAC
AAGGACATTGTAATGAACCTGTCAGCCGGAGGCTCAGTTGAAAGCCTGAC
ATGTGTCCTCCAGGAGTCCTACATAAAAAAGGGCTATCATGTCATCAAAG
TCAACATCTTTTAGAGCCACATGAACATGTACAAGTCACAATTACAAAGA
CGTGGCGTTAGATTCCTCAACTGTTATATTGCAACATTATAAAATAATAA
ACAGTTTGTAAGTATAAATAATTTTTCGTTATGAAAGTTGTGTTGTCTAA
CGTGGCTTTTTCTTACAATACATATTGAGCAGAACTTAGTATTACCTTCG
TTAGCGGGTGTTGTAGTCTTTCAGGTAAGCCGGTGCCTTAGACAGTCGAC
GTAGAGATCCCGTGACTTTGGCGCCGCTGGTCGTGGCGTTTTCCTTTTCA
TCAACCCTCTTTTTCTTGGCATTTGTCTTCACCTGTGCAACCTTTCTCTT
TTTTGCCGCCGTCTCATCTGCCTGTTCGCTGCCCTCCGACACCATCTCAT
CTGCTTCCCTTTCTTTCGTTCTCTCCCTCTGAGTCTCCGTGTCTTCTGTC
TCCTTTTGTTTCTTTGCAGTCACCTTCACATCATTCGTCTTTTTTTTCGC
CAATCTTTCTTCTCTCTTTCTCTTCTTTTCGATCTGCTCTTGTAATACAA
CATCTGACGTGAAAACTCGCGCTGTCTTGATTGCCTTTGAGACTCTGGTC
TTTTTCTCTGGCACAAGTGGCGGGACAAGAAGATCGGCAAGCTCAGCAGG
GACCAGCCTACCCAGCAGTGCATGGGCACGTTGAGGGCCGCAAGATTGGC
AACCAGCAACCCCGCATGGCTGACAGGCGGATTGGGGAGGCTGGTCTTCC
AGAGGTTTGCTCTCCTGTGACGTTGACTGGTTGGCTGCGTGCCCAACAGT
CAGGTCTTGGCTCTCCTGTGGCGTTGACTGATTGACCGCCTGCCCAACAG
TCAGCCAACGCTTACTTACAGCATCAATGTTGCACGGGAACAGACCAGTA
GCCTGGAACCCCTTCTTTAATGTCGGCATTGTGAACGACTTCTCGTATGC
TGTTTTAAGCAGTCTACTGATATTGCGCTTGCTCAGTTGGAACTGAGAAT
TTTCATAGAGTAGTCCTTGCACGACCGTGTCTAGAGTGTCCTTGAGGCTA
GAGAAGCAGGTTTTATCGAGGGGCTGGAGAAAGTGGGAAGTGTGAGGGGG
AAGGCCAAGGAGGATCACATTTTCTTTCAGGGCTGTTTCGATGGTCTTGA
CAGAAAAGTGTGCCTCACATTGATCCATGATCAGTAGCACTGGCCTTTCT
TGTGGGAGATGTCGCACATAATGATTACAAAACCACTTCTGGAACAGATC
TTTATCCATAAACCCGGAGTCGGAGACTGCATACAGGGTATTGTCCGGAC
CACTCTGTGAGTACGCGCCACTGGGGAAACTTTTCTTGTAGATAATCATT
GGTGCCAGAGATTTTCCTTCTGCTGATATGGCTACGTGAAAGGTGACTCT
GTCTTTGGTTCCCGAGCTTTTGGACGGTACACCCCGGACTCCCTTAGGGA
CAAGCACCCGTGCTCGATTTAGCTCCATACTGATTCCGGACTCATCACAA
TTGTGTACAAGATGTGGCTTATTGTGGAGTTGGTGCGTGTCCAAAATCTC
CTGGTACATTTCAAAGAAGCTGTCAATGACAGCCTGGCTTGACATCTTTG
CTCTCTCTCTTGACAGAGGATCTTGCGCCCTTTGTACGATGTTGGGGTGG
CGCTTCTTAAACCCCCTCCACCATTTCCGGCCAGCAACAAGTCGCCCCGG
GGTGGTCTTACTGCTCTTAAATCGTGGGGGGTCGGCACCCATCACAGAAC
ATTTTCTTTCGTGTATTTCCCCAGCAAGAGCCTTAAGGATGGGGACAGAG
ATGGGGTGTCCCCACTCAGCCATCTTCGTTACGTACTGCTCTAAAACGTC
TTCATCGCTCCCCAGTGCTGTCTGTCGACCAGGGCGGCAGGGGTGCAACC
CATGGATTTTATCTGTGAGCGTTTTCCTTGGCACGTTAAACCTGAGTGCT
GCCTTGTTGGGAGTGGTGCCTCCCGCGACAGCATCAAGGGCTTGTCGCAT
TTGCGACGCCGTGTATCGCATGTACTTTGTCGGGGTTTTGGTTGGGGTTG
TACCCAAGCCATTTACTTGTTCCTGAAGGTCCATGATCGCTCCAAACGTG
TGCTAGATAGAAGACAAAAGAAAGAAAATAAACACTTTATCGCCTTGATT
CAAGATAGTGTCTTTCATTGTTATCGTGAATCATTACTGTCGTCATATTC
TTTTATTCCATCAAATTCCAACCCTATATCTGTATTTTGATATTTTTAGA
CACCCCATACGAAATGATATGCACTCGTCCTAGCTAAACCATTCCCAATT
ACGCGGGTAATCAGGCTTATAAGACTTCGTAACTGTTGGTACTAGACACT
GCATATACTTACACAGTGCTCACATAGTTATATCTAAGCCTTAAAATTTA
TGCAGATAGTTCGCATGTATTGTCTCTTTTGTAATTTGATTATTAGTGTA
GTTATATTTACGTTTAACTCACCCCTCCCCTACATCCCCGTAATCAGGAA
AAATGGTATCTGCCGTAGAGGTCACTATTTGACCTCGGAATGCTGCTGGG
CGAAAAGAGGTGGAAGCACGGCTCAAAGCCGTTTGGCGTAAAGATCAAAG
GCTGATATTACTCAACTAGGACTGCTGAGGATACGTTTTGATACCTGATG
AACCACAGGTAGTACTTCTGGTTAAATCTGTAGCGTGTTTTCTTCACTAC
ATGAAAAATGAACTTTGTAGTCTTTCGTGACCTTCAGTTTATTCGCAAAT
ACGCATAGTTAGTGCGTAGATCTCATTAAAAACAAGCCTTTTGACTATTG
TTGACGATGTATACCGGCTTAATCATAGTTTCTATTTGGTCCAAGACTTG
ATTTTTATGTTTATTTATAGATAAATAAGGAGATCTTACCTTGCTATGTC
TTCATTTTTCACCTGGACACATTCGAACAGCCGAAAATGATAGTGCATGT
TCGATCGATTTGTCGGACGTTCGACGAAGGAAAAGTGGGTCAAAATATGT
GCAAATAAATGATTCAAACGAGCCCAAAACGACATATTTCCATACACATC
TTTATTATACAGGTTAGGAAGATCTTTAACAGGTTTGTAGATATGAAAAC
AAGTCCACAGCACCTTTTTTTAAAAGAAAAACAATAGGAGATTGTGAGAC
TGCCGTCCTCGCCAGGTACTCCGCCCACACACCGGGATGTTGTAGCGCGT
CCTCCCTTTCAATTTTTGCTTCGGAACTCGCCGTTTGGCTAAACTTGAAC
AAAGTATTGTATGCATATTAAACTTTAACATTTTATGCTTGGAAGAAAAG
TAAAAGTAACCTTAATATTGTAGCTTAACATGTCAAAAATTAAGGAAACT
CAAAGTGGCGAATTTGGGGTACAGTGGCGAATTTGGGGCCCCCTCCGTTA
CATCTTTTATCCTTTACACTGTATGACGCAAGTGATATTGCCATGGCAAC
AACTCTTACATAAGCTTCTAACATCATCATAATCCACCAGGATAATGCTA
CAGGTACCAGCTCTGCATCCCAAAAATACTGGTAATAACTGTATGAATAA
ATAAACATTTCATCCCAGCAGATATTCTTAGTAATGCTCTTAAATGCTTT
GTGCCACTCAAATTTCCATTACTCTGATAATATAAACACCACATACTACA
TAATATGTACATATATGCAATGAGTCAACTACACATTACTGTCATTGCTA
T Coding sequence (CDS) from alignment at Sc0000000:3476201..3482301- >transcript:BL86477_cuf1 ID=transcript:BL86477_cuf1|Name=transcript:BL86477_cuf1|organism=Branchiostoma lanceolatum|type=CDS|length=600bp|location=Sequence derived from alignment at Sc0000000:3476201..3482301- (Branchiostoma lanceolatum)
ATGCTCTTCACGCTGCAGACCATTCGTCATCGGGTCAATGCTGAGAAGGT
GGTAGGAGAGGAAGATCCTCCAGAGCTGAAGGTGGAGCGGTACCACCGTC
CGGGAGCCCCGTGTGCAGGCCTGATGGTCTACGCCAGACTGTCGGACGGT
GCCTGGGTCGCGTGTGGCTGGATAAGGGAGAAGGACAAGGACATTGTAAT
GAACCTGTCAGCCGGAGGCTCAGTTGAAAGCCTGACATGTGTCCTCCAGG
AGTCCTACATAAAAAAGGGCTATCATGTCATCAAAGTCAACATCTTTTAG
ATGCTCTTCACGCTGCAGACCATTCGTCATCGGGTCAATGCTGAGAAGGT
GGTAGGAGAGGAAGATCCTCCAGAGCTGAAGGTGGAGCGGTACCACCGTC
CGGGAGCCCCGTGTGCAGGCCTGATGGTCTACGCCAGACTGTCGGACGGT
GCCTGGGTCGCGTGTGGCTGGATAAGGGAGAAGGACAAGGACATTGTAAT
GAACCTGTCAGCCGGAGGCTCAGTTGAAAGCCTGACATGTGTCCTCCAGG
AGTCCTACATAAAAAAGGGCTATCATGTCATCAAAGTCAACATCTTTTAG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000000 | genome | Sc0000000:3476201..3482301 - |
Properties
| Property Name | Value |
|---|
| Transcript id | BL86477_cuf1 |
| Biotype | protein_coding |
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