transcript:BL86414_cuf0 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL86414_cuf0
Unique Nametranscript:BL86414_cuf0
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



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Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL86414_cuf0

>transcript:BL86414_cuf0-protein ID=transcript:BL86414_cuf0-protein|Name=transcript:BL86414_cuf0|organism=Branchiostoma lanceolatum|type=polypeptide|length=168bp
LGFIFDCKLSWHDHVQSLVSKASSRLHYLRLLTKQGMCVADLVQIYLSLI
RSVLEYGHVLLVGCSKEQSDSIERVQKRALRIISLGGRRSVPNLPSLKER
REAAAVKLFKDMLSPEHPLHDLVPPQRRTVTGRQLRNKNAFTLPKARTDR
LKQSFLHTAVRLYNDSIS
Run BLAST on NCBI

mRNA from alignment at Sc0000781:18644..19326-

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL86414_cuf0 ID=transcript:BL86414_cuf0|Name=transcript:BL86414_cuf0|organism=Branchiostoma lanceolatum|type=mRNA|length=683bp|location=Sequence derived from alignment at Sc0000781:18644..19326- (Branchiostoma lanceolatum)
GCCTTGGGTTCATCTTCGACTGCAAGCTGTCATGGCACGACCATGTACAA
TCCCTCGTTTCAAAAGCATCGAGCAGGCTGCACTATCTCAGACTACTGAC
TAAACAGGGGATGTGCGTGGCTGACCTGGTTCAGATTTACCTGTCACTTA
TTCGTAGCGTTCTTGAATACGGTCACGTTCTGCTGGTAGGTTGTAGCAAA
GAACAATCGGACAGCATAGAACGTGTACAGAAACGGGCCCTCCGTATTAT
CTCTCTCGGGGGTAGGCGATCAGTTCCCAACCTACCTTCCTTGAAGGAAC
GGAGAGAAGCTGCTGCAGTAAAGCTCTTTAAGGACATGTTAAGTCCCGAA
CATCCACTGCATGATCTTGTGCCTCCTCAAAGACGCACAGTTACTGGCAG
GCAACTGAGGAACAAGAACGCGTTCACTCTCCCCAAGGCAAGAACTGACA
GACTGAAACAGTCGTTTCTCCACACTGCAGTCAGACTTTATAATGACTCT
ATTTCCTAGCATTACCATCAGCCTGTGAGTTCGGATCTATGCTTAGTGTT
TGTTAATATATTATGTATTTTTGTTTGTTGACATTCTGCACGTATAAGTT
TCTTTGTAACAAACCTACGCAATTCAGGGTATATCATGTGTATATTTCCC
TGCCTATGTACGTTTGAGGAAGTAATAAATAAA

Coding sequence (CDS) from alignment at Sc0000781:18644..19326-

>transcript:BL86414_cuf0 ID=transcript:BL86414_cuf0|Name=transcript:BL86414_cuf0|organism=Branchiostoma lanceolatum|type=CDS|length=507bp|location=Sequence derived from alignment at Sc0000781:18644..19326- (Branchiostoma lanceolatum)
CTTGGGTTCATCTTCGACTGCAAGCTGTCATGGCACGACCATGTACAATC
CCTCGTTTCAAAAGCATCGAGCAGGCTGCACTATCTCAGACTACTGACTA
AACAGGGGATGTGCGTGGCTGACCTGGTTCAGATTTACCTGTCACTTATT
CGTAGCGTTCTTGAATACGGTCACGTTCTGCTGGTAGGTTGTAGCAAAGA
ACAATCGGACAGCATAGAACGTGTACAGAAACGGGCCCTCCGTATTATCT
CTCTCGGGGGTAGGCGATCAGTTCCCAACCTACCTTCCTTGAAGGAACGG
AGAGAAGCTGCTGCAGTAAAGCTCTTTAAGGACATGTTAAGTCCCGAACA
TCCACTGCATGATCTTGTGCCTCCTCAAAGACGCACAGTTACTGGCAGGC
AACTGAGGAACAAGAACGCGTTCACTCTCCCCAAGGCAAGAACTGACAGA
CTGAAACAGTCGTTTCTCCACACTGCAGTCAGACTTTATAATGACTCTAT
TTCCTAG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL86414gene:BL86414Branchiostoma lanceolatumgene
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL86414_cuf0-E1BL86414_cuf0-E1-1564476830-498530Branchiostoma lanceolatumexon
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL86414_cuf0transcript:BL86414_cuf0-proteinBranchiostoma lanceolatumpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000781genomeSc0000781:18644..19326 -
Properties
Property NameValue
Transcript idBL86414_cuf0
Biotypeprotein_coding