transcript:BL86410_cuf0 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL86410_cuf0
Unique Nametranscript:BL86410_cuf0
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL86410_cuf0

>transcript:BL86410_cuf0-protein ID=transcript:BL86410_cuf0-protein|Name=transcript:BL86410_cuf0|organism=Branchiostoma lanceolatum|type=polypeptide|length=209bp
RSPVAAEAGSPVAAEAGSPVAAEARSSVPAEASSPVPAEARSPVQAEARS
PVISPAGEEEEEEDVFAEDAAASAQLAISDSDQSIEAFPPSESPPSPPPS
PVSDSEEARRVSALPPISVDAAVSLLEAELVQSTQAAGIAAGSDLQGTQA
AGIAAGSDLQGTQAAGIAAGSDLQGTQAAGIAAGSDLQGTQAAGTAAVDA
GSNLQDGRE
Run BLAST on NCBI

mRNA from alignment at xfSc0014816:1..628-

Legend: CDSpolypeptideexonthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL86410_cuf0 ID=transcript:BL86410_cuf0|Name=transcript:BL86410_cuf0|organism=Branchiostoma lanceolatum|type=mRNA|length=628bp|location=Sequence derived from alignment at xfSc0014816:1..628- (Branchiostoma lanceolatum)
CGCTCACCTGTGGCAGCAGAGGCCGGTTCACCTGTGGCAGCAGAGGCCGG TTCACCTGTGGCAGCAGAGGCCCGCTCATCTGTGCCAGCAGAGGCCAGCT CACCTGTGCCAGCAGAGGCCCGCTCACCTGTGCAAGCAGAGGCCCGCTCA CCTGTAATCTCACCTGCAGGAGAAGAGGAGGAGGAGGAGGATGTGTTTGC TGAAGATGCTGCAGCTTCAGCTCAACTGGCCATCTCAGATTCTGACCAAT CAATAGAAGCTTTTCCCCCCTCCGAGTCGCCCCCCTCCCCTCCCCCGTCC CCTGTGTCTGATAGTGAAGAAGCCAGACGAGTGTCAGCTCTTCCTCCCAT ATCTGTGGACGCTGCAGTCAGTCTACTGGAGGCCGAGCTAGTACAGAGCA CTCAGGCTGCAGGGATTGCTGCAGGGTCAGACCTACAGGGCACTCAGGCT GCAGGGATTGCTGCAGGGTCAGACCTACAGGGCACTCAGGCTGCAGGGAT TGCTGCAGGGTCAGACCTACAGGGCACTCAGGCTGCAGGGATTGCTGCGG GGTCAGACCTACAGGGCACTCAGGCTGCAGGGACGGCTGCAGTGGATGCC GGGTCAAATCTGCAGGATGGTAGAGAAA

Coding sequence (CDS) from alignment at xfSc0014816:1..628-

>transcript:BL86410_cuf0 ID=transcript:BL86410_cuf0|Name=transcript:BL86410_cuf0|organism=Branchiostoma lanceolatum|type=CDS|length=627bp|location=Sequence derived from alignment at xfSc0014816:1..628- (Branchiostoma lanceolatum)
CGCTCACCTGTGGCAGCAGAGGCCGGTTCACCTGTGGCAGCAGAGGCCGG
TTCACCTGTGGCAGCAGAGGCCCGCTCATCTGTGCCAGCAGAGGCCAGCT
CACCTGTGCCAGCAGAGGCCCGCTCACCTGTGCAAGCAGAGGCCCGCTCA
CCTGTAATCTCACCTGCAGGAGAAGAGGAGGAGGAGGAGGATGTGTTTGC
TGAAGATGCTGCAGCTTCAGCTCAACTGGCCATCTCAGATTCTGACCAAT
CAATAGAAGCTTTTCCCCCCTCCGAGTCGCCCCCCTCCCCTCCCCCGTCC
CCTGTGTCTGATAGTGAAGAAGCCAGACGAGTGTCAGCTCTTCCTCCCAT
ATCTGTGGACGCTGCAGTCAGTCTACTGGAGGCCGAGCTAGTACAGAGCA
CTCAGGCTGCAGGGATTGCTGCAGGGTCAGACCTACAGGGCACTCAGGCT
GCAGGGATTGCTGCAGGGTCAGACCTACAGGGCACTCAGGCTGCAGGGAT
TGCTGCAGGGTCAGACCTACAGGGCACTCAGGCTGCAGGGATTGCTGCGG
GGTCAGACCTACAGGGCACTCAGGCTGCAGGGACGGCTGCAGTGGATGCC
GGGTCAAATCTGCAGGATGGTAGAGAA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL86410gene:BL86410Branchiostoma lanceolatumgene
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL86410_cuf0-E1BL86410_cuf0-E1-1564476830-543487Branchiostoma lanceolatumexon
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL86410_cuf0transcript:BL86410_cuf0-proteinBranchiostoma lanceolatumpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
xfSc0014816genomexfSc0014816:1..628 -
Properties
Property NameValue
Transcript idBL86410_cuf0
Biotypeprotein_coding