transcript:BL86404_cuf0 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL86404_cuf0
Unique Nametranscript:BL86404_cuf0
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



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Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL86404_cuf0

>transcript:BL86404_cuf0-protein ID=transcript:BL86404_cuf0-protein|Name=transcript:BL86404_cuf0|organism=Branchiostoma lanceolatum|type=polypeptide|length=115bp
MEENKPILDFLQPLGLETYVGDFKTRGFTEDSDFQGLTLDDLDSMNITDE
EHRGRIIAAGETFIPSQYVLKVYVFCIFKRCLQQLQHIAIGDSTYQGLCA
KHAFNICCFDFIPAV
Run BLAST on NCBI

mRNA from alignment at xfSc0004058:343..1056-

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL86404_cuf0 ID=transcript:BL86404_cuf0|Name=transcript:BL86404_cuf0|organism=Branchiostoma lanceolatum|type=mRNA|length=714bp|location=Sequence derived from alignment at xfSc0004058:343..1056- (Branchiostoma lanceolatum)
AAATAATTTGCATAGAAAAGACGCGCGAAAGGTGGACAAGTCTGGGCAAG
TGAGGTTTGGCCCCCTTTTTTCGTGACGTCACATCCCAGTGGACCAATCG
TGTGGTTGCTTTACCGGCAAGGGGGCGGGGCCTGTCCGGGGATGTTTTAC
CAACGCGGGATGCCTGCAGTCACAACTTTCTTTCGTATGAAATGCTGGAG
TAGCAACAAGTTCTGTTTTTTTTCTGCCTGCTGATTTCTTTCCAAATGGA
AGAAAATAAGCCTATTCTAGATTTCCTGCAGCCATTGGGACTGGAGACGT
ATGTTGGAGATTTTAAAACTAGGGGTTTTACCGAAGACTCTGATTTTCAG
GGTTTAACACTGGATGACCTGGACAGTATGAACATCACAGATGAAGAGCA
CAGGGGCAGAATAATAGCAGCAGGTGAGACCTTCATACCCAGTCAATATG
TATTGAAAGTATATGTGTTTTGTATATTCAAACGATGTCTTCAACAATTG
CAACACATTGCAATCGGTGATAGCACTTACCAGGGCCTTTGTGCCAAACA
TGCCTTTAATATCTGTTGTTTTGATTTTATTCCAGCTGTTTGAATAGTTT
GTGTGTCGCCCATGTTCTCTTAGAATGATTTTCAGTAAAGCACCTACTAG
ATGTCCAGAATGGTGCAAGCTTGGACCAGTAGTTAGAGAAAGTTTGCCCG
GATCTCATGTAAAC

Coding sequence (CDS) from alignment at xfSc0004058:343..1056-

>transcript:BL86404_cuf0 ID=transcript:BL86404_cuf0|Name=transcript:BL86404_cuf0|organism=Branchiostoma lanceolatum|type=CDS|length=348bp|location=Sequence derived from alignment at xfSc0004058:343..1056- (Branchiostoma lanceolatum)
ATGGAAGAAAATAAGCCTATTCTAGATTTCCTGCAGCCATTGGGACTGGA
GACGTATGTTGGAGATTTTAAAACTAGGGGTTTTACCGAAGACTCTGATT
TTCAGGGTTTAACACTGGATGACCTGGACAGTATGAACATCACAGATGAA
GAGCACAGGGGCAGAATAATAGCAGCAGGTGAGACCTTCATACCCAGTCA
ATATGTATTGAAAGTATATGTGTTTTGTATATTCAAACGATGTCTTCAAC
AATTGCAACACATTGCAATCGGTGATAGCACTTACCAGGGCCTTTGTGCC
AAACATGCCTTTAATATCTGTTGTTTTGATTTTATTCCAGCTGTTTGA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL86404gene:BL86404Branchiostoma lanceolatumgene
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL86404_cuf0-E1BL86404_cuf0-E1-1564476830-532593Branchiostoma lanceolatumexon
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL86404_cuf0transcript:BL86404_cuf0-proteinBranchiostoma lanceolatumpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
xfSc0004058genomexfSc0004058:343..1056 -
Properties
Property NameValue
Transcript idBL86404_cuf0
Biotypeprotein_coding