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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL86359_cuf0 >transcript:BL86359_cuf0-protein ID=transcript:BL86359_cuf0-protein|Name=transcript:BL86359_cuf0|organism=Branchiostoma lanceolatum|type=polypeptide|length=170bp
MATGDTSGLLPAYSENVWVEMKGSGVEPEQESLCPGQHVSVPQQYLPQQQ
TAPLQQYVVLLQPNGQAAVVTSDARPLMNDQEPTFVTPEQGDIRTYMGLS
IFTALLCCLPVGALAIAKSCEVKDAKASRDSNRAKKASNVALCLNDLSAF
LGIICWVLLIIRIVLVSKYQ Run BLAST on NCBI mRNA from alignment at Sc0000021:369838..378593+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL86359_cuf0 ID=transcript:BL86359_cuf0|Name=transcript:BL86359_cuf0|organism=Branchiostoma lanceolatum|type=mRNA|length=8756bp|location=Sequence derived from alignment at Sc0000021:369838..378593+ (Branchiostoma lanceolatum)
AATCCGTTTCCCGTTGCATTTACTTCCTCGTCCTAAAAGGATATATTTAG
TAACGAGACAGACATCGCACAGATTTTCAGTCAGAGGTTGCAATGGCGAC
TGGAGATACTTCTGGGCTTCTTCCCGCTTATTCTGAAAACGTGTGGGTTG
AAATGAAAGGCAGTGGCGTCGAGCCAGAGCAAGAAAGCCTGTGCCCAGGG
CAGCATGTGTCTGTACCTCAGCAGTACTTACCACAACAGCAGACCGCTCC
ACTCCAGCAGTATGTCGTACTGCTACAGCCGAACGGACAGGCAGCAGTGG
TAACAAGTGACGCACGTCCTCTGATGAATGACCAGGAGGTATGATTTGAT
ATTTCGTTTTAAAAGTTAAAGTTAAAGTGACCCGGGCGTCTCCATTTCTA
TAGCCCTTGGGCCACACACATTTGTGCAAGTCACTACAGCAGGGGGCTGG
TCCGCTGGTAGTGATGTGTGTCCCATACTCTTTCCCAAATGCTGAGTGCT
ATGCAGAGAAAGCAGTATGTGCCATTTTTAAAGTCTTTGGTATGACCCGG
CCGGGGTTCGAGCTCACGACCTACCGTGTGCAAGGCGAGCACTCTACCAA
CTCGGCCATTGCGCCGGTGTACAATATTTCGTTTGGATGATCTTATTTTC
TGCTGGTTAGGTCAGAGAAGACCCAGACTTTTCAACTATGTCCCTAACAG
GTGNCTTATTTTCTGCTGATTAGGTCAGAGAAGACCCAGACTTTTCAACT
ATGTCCCCAACAAGTGACTCTTAAAATGTCTAAAAGTATGAATATACTCA
TAAATGAGACGGTGCTGCCTTATTCTATTGTCACCAGGTCGAGTGATTTT
TGTTGGGGGGAGGACCTTGGACCCACTTGACTAGATAAGACCGAGAACTT
CTTGAACGTCCTTGTATGCAACGCTTTCATTTTCTTTATATATTGTTTTC
TTTAATTTAGCCAACCTTCGTGACACCGGAGCAGGGCGATATTCGTACCT
ACATGGGCCTGTCCATTTTCACAGCCTTGCTCTGTTGTCTGCCTGTTGGC
GCATTGGCAATCGCCAAATCGTGCGAGGTAAGATGATTTTTGTACGATTT
CTCTGTGTTGTTTAGTGTCTTCTCAGTCATAATTTTATATTTTGCAGAAT
ATTCCAATAATAAATTGATCCCAAGGCATTCAGGTCGCGGGGTATTGCCG
TATAGAGGAAAGGAATTACGTGCCATGGATTGCCCATAGAACGAGAGTCT
GAAGACCCAAAATCTCCATGAAATTTGTTTTTATATATGATGTGTTTTTA
TTTGCTCAAGTTATCTATTGTTATGTTGGTCTTTTTTCATGGAGATAACA
AATATACAGGTTAGGTTGTATATACCTTTGTGGTTTGAGCTCCAGCTGTC
GGGCCCTGGGGAATATATTCGACTCAGTTTCGCTACCAACAGGTGTGCTA
TAATATGCGATAAACAACACTGCAAATACAGATTTTCCTCATTACTTATG
CAAATTCAGTCCCAATTTGCATAATTTGCACTTCAGTGTGTACATCTATG
TCTAACCTGCCTGCGTACCAAATAATATGAAAATCTCTTGTTCCTTTCTA
CGCCAATGCAGTTCCAGTGACACATACAAGGGGGCCCAAAATCGACCTTG
ACCTTTCTCCTCCCAACACCTACTGACATACCAAATATCATTACAATCCA
TTTACATGTTCTACAATTATGCTGATTTTAAGCATCCGGTGACACAAACA
TACAACCGGTGACACAAACACGCAAACACACACGCAAAGACACTCAAAAC
AATATCCCCATGAAAAAGTATTTTTATATGGAGATAATAACGAACATGGA
AGGCGGGAAGTACGTACATGTACGTCGTGTGAGCTTCGCAGTATATGTCA
TGTTTGTTTGTTTGTTTATTAACATGTTGATTTCTTTACAAAATTGTTTG
TTAGGTGAAGGACGCTAAGGCTTCTCGTGACTCCGACAGGGCCAAAAAGG
CGTCAAATGTAGCCCTATGCCTCAACGATTTATCGGCGTTCCTGGGGATC
ATTTGCTGGGTCTTGTTGATCATTCGGATCGTTCTGGTCAGCAAATACCA
ATGATTCAAATCAAGATGTGAGTAATGAAACGACTAGGTCAAACTACTCC
CTACTATTTATTACAAGGTGTTTCACAATTAATTGGAGGAAAATAGAAAA
TAGCTATAGGTAAAGAAAATACGAAGAACGAATGGACATGGTACGCATGC
AATGAGAACACTTGGATTAGAATTGAAGTCACACCACTATCACCATCATT
ACCATCATCACCATCATCATTATCATCATTATCATTGTAACCTGTAAATC
GTTTACTACTTCATTTGATTGATTGATTGATTGTTTATTTTATTGTTAGG
CGAATGAGGCAAAGACCTACGGGGACAAAAAGGCGTCGATCGCGGCAGCC
CTAACTGTCAACGGGATTGGGATCGATCGTTCTGGGGATTATTTTCATTA
TCATCCTGGTTATTCTTAGGTTACAATATTATAATTGACTTCCATGTTGC
GATATCTAGATTGCATTGCTTGTTTAAAAGAGTAAATGCATTGGGTATAC
GCAAAAAGAAAATTAGTAGAGAAGTAAAATTTGTCTCACTAAGAGATAAG
TTTAATTAATGAGGAGTTAGATTTGTGCGAACATTTTGCAGTTCTTGGTA
CGTTCGCCATCTAACGTCTAACAATAAAGTGATGGATTATAATGCAGACA
GAATGCGCTGATGTCAATAAAGAGTAAAACTTGTTGCAACTCGTTTGAGA
TGTTCTATTATCTTTGCAGAGTTGGTTAAAATTACACTTTGTGAAATAAC
AGGAAACCAGTTCATATCAAAATTGTGAAAGGCAAACATTCGGATAAGGC
ACTCGTGTAACACACGTTCAAAGTATTCAGTTCCTGAGCTATGGATCATA
GCGAAAGAAACCTACATTGGTCTATAACCTAAATTAGGAACTTGTACATG
TACGTTTAATCTATGTTCATTGCGTGACAATGCTTCCAGTGTAATGACAA
GATGACAGATGTAAATGTTTTTTTTATTAAAATCTAAATCTTTCTAAAGA
GCTTATATGACTGGTTTATTGAATGAACTGTCTTCACAGCCCAACAGGGC
TGAATAGTGAAATTCAGTACATAATTTCCCATACATAATAAAATACAACA
ACGAACGGACAGTTATATAATGATAGAAGGGAGGGACTCGTCCTATAAAA
AAAGACCATATCACGGACAGCCAGGACAAAATATAGAAAACTGGAAGTGC
TACTGTTGTACAAGGGTCAGAACATCGGTGGACCATGACCTTTGTCCCCC
CCAAGACCTACCTATGAAATATCATCACAATTCATCTAAAGGTTCTTAAG
TTATGCTGAATAGAAATACACACAGAAACATAGACGAGCGCGCTCACAAA
CACACACACACACACACACACAAACAAACACACAAACACACACAGATACA
TACACAGACACGCAAACACACACGTACACACAAACAAACACGTACACACA
CACACACACACAAACACACACAGATGCATACACAGACACGCAAACACAAA
CACACACACANACACACACACGCAAACACAAACACACACACACACAGAAA
CACAGAAAAACACATCCAAAACACACCTCCAATTTTCATGGAGTTAAAAA
CGTAGAACAAACGTAAATCATTAAAATGCCTTCACCGTACGCATAAACCA
AGTCTATGTTTTACACTGATCACGCCATGACGGTCGAACATGTGTAGAGT
TTGAACTATAGCTACGACGTAAACCTTGTCGATTCCATGCTCCTTCATAG
TGTAAACGCTAGCTTAATCTTTCGGCCCGCTAGGTTTGGGGTGCTAACGC
TGTTGGTGCACCAAAGATTTCCTTCCGTATATGATGATCCCTTTTTTGAT
ACAGATCAGAAAATAATCCCGTGGGGCCTGAAAAATCATATTTTTATTGC
AAAAAGATGCACCCAGTCTAGACAAACATGCGTCCATGTCTTTGAATAAT
TTCAAAGCCATCAGACGACCTTAACTCTTCAAAGGTCCGCCGGTGCCAAA
GGCGGCATTAGGACTCTAACGCAATCGTCTGCTGCTACTTAGATGCCCGC
CTTAAAGGGATTTGGAGCGAAATTGGATTCTTGGATCTTTGAACTATTTA
TCTTCTTTACATTGGATGTCGTCACCGTATTCCGGACCTGTCTAGTGCCT
ACCTGCCTACGTGCTCAGGCCAGAAACTGGCCCCTCGCTTTCCAAGCAGT
CCTGTCCTTTGCCCTAGCCTCTGCTTCCCAACTGTTTAAGCCCGTGTCCT
CCACAATTTGGTCCTTCCATCTCTTCGGTGGTCTTCCCCGGGGTCTGGGG
GTACGGGTAGCGAATTCCTGGCTGTAGGCTTTGTAGACTAGTGTTTGTGG
GGGTCGTCTCATGACCTGTCCAAACCACCTCAGCCTTCTCGTCTGTACCA
TTTCCACGATGGTCTTTGATGGACCAGACCAGTTCAATCGCGAGAGTTAA
ATTGTAGATGTCGTGGGGTCACTTGCTCTTTGTATTATTAGGTAGTTTGC
CATAGATAGGTCCCGTTGGGAAACTTATGGCGCTGAAGAGTCTGTGAGAA
AAAGGTCAATGCTGATACAGGATAAGGAAAGGGTATGTAACATGATTTCA
GGATGTCTTCAGAGATTTGGCTGAGTCAGCGTTTTCTTGAAGGCAGGCCA
TGCTGTTTCCATGATATGGACGGCATCCGCGCACCCATCACTTTTTTGTC
CGTTTAAAAAAAAAAAGAAAAACGTTTTCGCATCCTCCCAGCAGACCCGA
TATGTTCGTTACCTCCCATAGCGGCCCTGCCCTTCCGAGCCCCTGAACAC
GCTTCTGGCGACGTCACCACTAAACATCTTTCAGCCAATCAGAGGGTTTG
CTAAAGCTCATCTCGAGCAAAGCCGCAAAGGACGCTGGGAAGCTATCAGC
CAATTAGCTACTTGATTATTCATGAGTAACTAACGACTGTTTGTGCCAAA
TAAGGCTAGCTCATTAATTATTTATGAGCAACTATCAGTGACGCCCTCAG
AAGCCAAAATCTCCGTTCAAAAGATCAGGACTGAGACCGGGAGGGTTTGC
CGAACATTTCCCGAGCGGGTTTCAGCGCTGATAAAGGAGGGTGCGTTTTA
GAACAGAATGAAAATCGTACAAAGCAGCTGCAAAATGAGAAAATATATTA
AAAACAAATATTGGAAGATTGATATCAATATCGTAGAATGCCGATGTCAA
TTCGAAAGTCATAGACTAAGTTGAGAAAAAAGAAGAATCTATTGTTTCGC
CAATTTTTGTACGCCCGCATCATCAATTCATGTTTGGGCTCAAAGAAGAT
GGCATTCATATAGTCGAATCAACATGGCCTATAGACCTCAGATCGGCAGC
TTGCCCTATATAAATCCAGTTATTTAACTTGTGGCGCTAGATAGTCGGCC
TCAAGTAGGTCATTCCCCGCACAAGATGAAGGAGGCGTATGTCTTCATGA
TGTCCTTAGAAGTTCGACCGCTTTTCTTTGTCCAAGAAGTGGCCGATGAT
TTGATTTTCGGATCCATTCAGCTTCTTGTGAGATATGATAAAAGAGCTCG
GTAACTAATCGTTTGGCTACATCGCAAGTTCACTATAGGTCGTCTTGCTA
CAAAGCAAGTCATTTCGCTACTGATAAAGATGCAGCTTTCGAGCCTAAAG
TCGGCCCCAGTTCGAACATGCATATGGCCATGGCGGGCCTGTGTATATGA
GGGAGCTTCAGGAATAAGCCTCAAGCTTCAAACCTCGGCAAGTAAAAGAT
CAACACACTTATTGAGCCAGAAGAGTAGGACGAACCTGTGTGCTTGGGTA
AATATGCGAACCTTAGCGACTGTAAATAAATGTACAAAAATTCAACTTCT
TTTTCAAGAGAAGTCTAATACAAAGAGGAACAAATGGCCTCATCGATGTT
ATGGTGTATTGTTGCTACGGCAGCTCAGATATTGTTTCTGCAACATTTAG
GGCTAAATAAAAAAAAGGGTAACTTTGACCTGTCTATTATTTCATTGAAA
ACAGGTTGCAAATGTAAACTTCAGCTTTTTGATAAGAAAAAAAATGTGTG
TACTTTTTGATTTTCTCTTCTGTAAAGTGGCCCCACTTAAGCTTTCTGTT
CCTGAATCCCCCCCTTTTGAAAATCCGTTTCCCGTTGCATTTACTTCCTC
GTCCTAAAATAATATATTTAGTAACGAGACAGACATCGCACAGATTTTCA
GTCAGAGGTTGCAATGGCGACTGGAGATACTTCTGGGCTTCTTCCCGCTT
ATTCTGAAAAAGTGTGGGTTGAAATGAAAGGCAGTGGCGTCGAACCAGAG
CAAGAAAGCCTGTGCCCAGGGCAGCATGTGTCTGTACCTCAGCAGTACTT
ACCACAACAGCAGACCGCTCCACTCCAGCAGTATGTCGTACTGCTACAGC
CGAACGGACAGGCAGCAGTGGTAACAAGTGACGCACGTCCTCTGATGAAT
GACCAGGAGGTATGATTTATTTATCATTTATTTCGATTTTACCACATTTG
TGGAAGGATTGACATAACAGGTGAACTATCACCTTTTCAAGATGTCATCC
CAGACCGAACTGTAAGGTTTGGGCCATCGCACACCGGGGCATGCCCCTAC
TCTTTTTCGAAAGGTGTGGTGGGTTCTTTAACGTGCGCGGGATGTGGTTC
TCCCCAAACACGGGACCTCCATTTAACGTCCTATCCGAGGGACGTTCCTA
ACCCTAGATGAGCTAGGTACTCATTTACACTTGAGTGAAGTGAGGAAAGA
CGTGTTAAGTGCCTTTCCCAAGAGCACAAGTCCGGACATGTCTCTGGGCA
CACCGGGATACGAACCGGGGACCCATTGTTTGACAGCCGAGTGATCTACC
ACTGCGCCACACGGACGCCACTGTATGATGTGATATTTCGGTTGGATGAT
CTTATTTTCTGCTGATTAGGTCAGAGAAGACCCAGACTTTTCAACTATGT
CCCCAACAAGTGACTCTTAAAATGTCTAAAAGTATGAATATACTCATAAA
TGAGACGGTGCTGCCTTATTCTATTGTCACCAGGTCGAGTGATTTTTGTT
GGGGGGAGGACCTTGGACCCACTTGACTAGATAAGACCGAGAACTTCTTG
AACGTCCTTGTATGCAACGCTTTCATTTTCTTTATATATTGTTTTCTTTA
ATTTAGCCAACCTTCGTGACACCGGAGCAGGGCGATATTCGTACCTACAT
GGGTCTGTCCATTTTCACAGCCTTGCTCTGTTGTCTGCCTGTTGGCGCAT
TGGCAATCGCCAAATCGTGCGAGGTAAGATGATTTTTGTACGATTTCTCT
GTGTTGTTTAGTGTCTTCTCAGTCATAATTTTATATTTTGCAGAATATTC
CAATAATAAATTGATCCCAAGGCATTCAGGTCGCGGGGTATTGCCGTATA
GAGGAAAGGAATTACGTGCCATGGATTGCCCTGTAGAACGAGAGTCTGAA
GACCCAAAATCTCCATGAAATTTGTTTTTATATATGATGTGTTTTATTTG
CTCAAGTTATCTATTGTTATGTTGGTCTTTTTTCATGGAGATAACAAATA
TACAGGTTAGGTTGTATATACCTTTGTGGTTTGAGCTCCAGCTGTCGGGC
CCTGGGGAATATATTCGACTCAGTTTCGCTACCAACAGGTGTGCTATAAC
ATGCGATAAACAACACTGCAAATACAGATTTTCCTCATTACTTATGCAAA
TTCAGTCCCAATTTGCATAATTTGCACTTCAGTGTGTACATCTATGTCTA
ACCTGCCTGCGTACCAAATAATATGAAAATCTCTTGTTCCTTTCTACGCC
AATGCAGTTCCAGTGACACATACAAGGGGGCCCAAAATCGACCTTGACCT
TTCTCCTCCCAACACCTACTGACATACCAAATATCATTACAATCCATTTA
CATGTTCTACAATTATGCTGATTTTAAGCATCCGGTGACACAAACATACA
ACCGGTGACACAAACACGCAATCACACACGCAAAGACACTCAAAACAATA
TCCCCATGAAAAAGTATTTTTATATGGAGATAATAACGAACATGGAAGGC
GGGAAGTACGTACATGTACGTCGTGTGAGCTTCGCAGTATATGTCATGTT
TGTTTGTTTGTTTATTAACATGTTGATTTCTTTACAAAATTGTTTGTTAG
GTGAAGGACGCTAAGGCTTCTCGTGACTCCAACAGGGCCAAAAAGGCGTC
AAATGTAGCCCTATGCCTCAACGATTTATCGGCGTTCCTGGGGATCATTT
GCTGGGTCTTGTTGATCATTCGGATCGTTCTGGTCAGCAAATACCAATGA
TTCAAATCAAGATGTGAGTAATGAAACGACAAGGTCAAACTACTCCCTAC
TATTTATTACAAGGTGTTTCACAATTAATTGGAGGAAAATAGAAAATAGC
TAAAGGTAAAGAAAATACGAAGAACGAATGGACATGGTACCCAATGAGAA
CACTTGGATTAGAATTGAAGTCACACCACTATCACCATCGTTACCATAAT
CACCATCATCATTATCATCATCATCATTGTAACCTGTAAATCGTTTACTA
CGTCATTTGATTGATTGATTGATTGTTTATTTTATTGTTAGGCGAATGAG
GCAAAGACCTACGGGGACTTTGATCGGGCCAAAAAGGCGTCGCGGCGAGC
CCTAAC Coding sequence (CDS) from alignment at Sc0000021:369838..378593+ >transcript:BL86359_cuf0 ID=transcript:BL86359_cuf0|Name=transcript:BL86359_cuf0|organism=Branchiostoma lanceolatum|type=CDS|length=1539bp|location=Sequence derived from alignment at Sc0000021:369838..378593+ (Branchiostoma lanceolatum)
ATGGCGACTGGAGATACTTCTGGGCTTCTTCCCGCTTATTCTGAAAACGT
GTGGGTTGAAATGAAAGGCAGTGGCGTCGAGCCAGAGCAAGAAAGCCTGT
GCCCAGGGCAGCATGTGTCTGTACCTCAGCAGTACTTACCACAACAGCAG
ACCGCTCCACTCCAGCAGTATGTCGTACTGCTACAGCCGAACGGACAGGC
AGCAGTGGTAACAAGTGACGCACGTCCTCTGATGAATGACCAGGAGCCAA
CCTTCGTGACACCGGAGCAGGGCGATATTCGTACCTACATGGGCCTGTCC
ATTTTCACAGCCTTGCTCTGTTGTCTGCCTGTTGGCGCATTGGCAATCGC
CAAATCGTGCGAGGTGAAGGACGCTAAGGCTTCTCGTGACTCCAACAGGG
CCAAAAAGGCGTCAAATGTAGCCCTATGCCTCAACGATTTATCGGCGTTC
CTGGGGATCATTTGCTGGGTCTTGTTGATCATTCGGATCGTTCTGGTCAG
CAAATACCAATGAATGGCGACTGGAGATACTTCTGGGCTTCTTCCCGCTT
ATTCTGAAAACGTGTGGGTTGAAATGAAAGGCAGTGGCGTCGAGCCAGAG
CAAGAAAGCCTGTGCCCAGGGCAGCATGTGTCTGTACCTCAGCAGTACTT
ACCACAACAGCAGACCGCTCCACTCCAGCAGTATGTCGTACTGCTACAGC
CGAACGGACAGGCAGCAGTGGTAACAAGTGACGCACGTCCTCTGATGAAT
GACCAGGAGCCAACCTTCGTGACACCGGAGCAGGGCGATATTCGTACCTA
CATGGGCCTGTCCATTTTCACAGCCTTGCTCTGTTGTCTGCCTGTTGGCG
CATTGGCAATCGCCAAATCGTGCGAGGTGAAGGACGCTAAGGCTTCTCGT
GACTCCAACAGGGCCAAAAAGGCGTCAAATGTAGCCCTATGCCTCAACGA
TTTATCGGCGTTCCTGGGGATCATTTGCTGGGTCTTGTTGATCATTCGGA
TCGTTCTGGTCAGCAAATACCAATGAATGGCGACTGGAGATACTTCTGGG
CTTCTTCCCGCTTATTCTGAAAACGTGTGGGTTGAAATGAAAGGCAGTGG
CGTCGAGCCAGAGCAAGAAAGCCTGTGCCCAGGGCAGCATGTGTCTGTAC
CTCAGCAGTACTTACCACAACAGCAGACCGCTCCACTCCAGCAGTATGTC
GTACTGCTACAGCCGAACGGACAGGCAGCAGTGGTAACAAGTGACGCACG
TCCTCTGATGAATGACCAGGAGCCAACCTTCGTGACACCGGAGCAGGGCG
ATATTCGTACCTACATGGGCCTGTCCATTTTCACAGCCTTGCTCTGTTGT
CTGCCTGTTGGCGCATTGGCAATCGCCAAATCGTGCGAGGTGAAGGACGC
TAAGGCTTCTCGTGACTCCAACAGGGCCAAAAAGGCGTCAAATGTAGCCC
TATGCCTCAACGATTTATCGGCGTTCCTGGGGATCATTTGCTGGGTCTTG
TTGATCATTCGGATCGTTCTGGTCAGCAAATACCAATGA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000021 | genome | Sc0000021:369838..378593 + |
Properties
| Property Name | Value |
|---|
| Transcript id | BL86359_cuf0 |
| Biotype | protein_coding |
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