transcript:BL86166_cuf0 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL86166_cuf0
Unique Nametranscript:BL86166_cuf0
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



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Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL86166_cuf0

>transcript:BL86166_cuf0-protein ID=transcript:BL86166_cuf0-protein|Name=transcript:BL86166_cuf0|organism=Branchiostoma lanceolatum|type=polypeptide|length=109bp
RALTPLYFHPTNFMKYHFLANRRVWWSVTLYIHTRSTYNAHAHIIQPIEP
NRETNFGKNGLDCDYLFSTDPSTPHRIKIQILLDPPRNIIQNPASSTPHP
FLFFGTAQF
Run BLAST on NCBI

mRNA from alignment at xfSc0001933:2016..2343-

Legend: CDSpolypeptideexonthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL86166_cuf0 ID=transcript:BL86166_cuf0|Name=transcript:BL86166_cuf0|organism=Branchiostoma lanceolatum|type=mRNA|length=328bp|location=Sequence derived from alignment at xfSc0001933:2016..2343- (Branchiostoma lanceolatum)
CGTGCCCTGACCCCCCTTTATTTTCATCCGACTAATTTCATGAAATATCA
TTTTCTCGCCAATAGAAGGGTCTGGTGGTCTGTAACTTTGTACATACATA
CAAGAAGTACATACAATGCCCATGCACACATCATTCAGCCTATAGAACCT
AATAGGGAGACAAATTTTGGAAAAAATGGACTCGACTGTGATTACCTGTT
TAGTACCGACCCTAGCACCCCACACAGAATAAAAATCCAGATTTTGCTTG
ACCCCCCTCGAAATATAATCCAAAATCCGGCCTCTTCAACCCCCCATCCA
TTTTTATTTTTTGGAACGGCCCAATTCC

Coding sequence (CDS) from alignment at xfSc0001933:2016..2343-

>transcript:BL86166_cuf0 ID=transcript:BL86166_cuf0|Name=transcript:BL86166_cuf0|organism=Branchiostoma lanceolatum|type=CDS|length=327bp|location=Sequence derived from alignment at xfSc0001933:2016..2343- (Branchiostoma lanceolatum)
CGTGCCCTGACCCCCCTTTATTTTCATCCGACTAATTTCATGAAATATCA
TTTTCTCGCCAATAGAAGGGTCTGGTGGTCTGTAACTTTGTACATACATA
CAAGAAGTACATACAATGCCCATGCACACATCATTCAGCCTATAGAACCT
AATAGGGAGACAAATTTTGGAAAAAATGGACTCGACTGTGATTACCTGTT
TAGTACCGACCCTAGCACCCCACACAGAATAAAAATCCAGATTTTGCTTG
ACCCCCCTCGAAATATAATCCAAAATCCGGCCTCTTCAACCCCCCATCCA
TTTTTATTTTTTGGAACGGCCCAATTC
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL86166gene:BL86166Branchiostoma lanceolatumgene
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL86166_cuf0-E1BL86166_cuf0-E1-1564476830-526214Branchiostoma lanceolatumexon
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL86166_cuf0transcript:BL86166_cuf0-proteinBranchiostoma lanceolatumpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
xfSc0001933genomexfSc0001933:2016..2343 -
Properties
Property NameValue
Transcript idBL86166_cuf0
Biotypeprotein_coding