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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL86030_cuf1 >transcript:BL86030_cuf1-protein ID=transcript:BL86030_cuf1-protein|Name=transcript:BL86030_cuf1|organism=Branchiostoma lanceolatum|type=polypeptide|length=415bp
MSHRCAVVGCDNDRRHPEKWIIKKHVTDHMGNGSLVFHSCPLKHFKKWEK
IIDRKNYAVTKNTRICSNHFVYGQPRKQAPHPSLHLRGKSVARRRRLVKK
ASSVSDPSSQTVTTVNVGKAIEQASPREPLSKPYYESTYLMMKDELISIL
DAISSAMGTEDDVEKLRDLLRLTIQLLRGVKEQLETVVELRSLDQFGLRR
FEGSDEDIRFWTGFYSYEALMAFYDNFIEASEDKLRYWASVNAQRTDDTR
AKCGKKHSTLPIDEMFMTLVKLRQGSANKDLADRFGVSPPHVVTWINFMH
SVLSDINIWMSKSKVRKYMPKCFQGLYKDVRVIIDCTEIHMERPSDFEVQ
AATYSVYKHCNTLKALIGISPSGVPTFISDLFEGSISDNDITLQSGLLNQ
CEREDAIMAQIGDLP Run BLAST on NCBI mRNA from alignment at Sc0000009:2762888..2766398- Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL86030_cuf1 ID=transcript:BL86030_cuf1|Name=transcript:BL86030_cuf1|organism=Branchiostoma lanceolatum|type=mRNA|length=3511bp|location=Sequence derived from alignment at Sc0000009:2762888..2766398- (Branchiostoma lanceolatum)
CCCAAAACATTATTACGTCACAGTTTGTTTACCGCAATGAATGCCGGGAC
AGTTTGTGGTCAATCGATGTTTACATTGTGAAGCGTTGTGAAGCGCGGTG
CTGTCAGTGCTTGCGTCGGTGTTTGAGGAGGGCGCAACGTGCCGCGACGC
AGGTGTTCCGACACGGCAGGTACGAACACCTGTTCTAAAGAACATTCTAG
AACGGTCGGTTAAGAATTAAAGATCATTTTAAGTTTTCAAAGACAGGTGT
GTGGACGTGATTGATTTTCGCTGCCTCTAGTGTCATAATGTGAAGAAGAA
CAGTTCCAGTCGTGAACATGTCCCATCGCTGCGCCGTTGTTGGATGCGAT
AATGACAGAAGGCACCCAGAAAAGTAAGTAGAAAGTATTTCAATCAACGA
AGAAAGCTAACGTGAAAAAGTCGTGGTAAGAGTAATCCGGAGAAAAAGGA
TGCCGTCTGCTACTTAGTTGTCTTCGTAACGTAACATTATGATGTAACGT
TGAGACATAGAAGACATTGACTTACTTCCTAATAGAGATTCGTTGTATAC
ATTTAAGATTGGTAAAAAAGTTTCATTCATTTTCTGGTCTTTGTAGTAGA
AATGTTTGCCGTCTTATTTAGTTGATTTTTGCCTTTTTTTCAGATGGATA
ATCAAGAAACACGTAACGGACCATATGGGAAACGGTTCTCTTGTTTTTCA
CAGTTGCCCCCTGAAACACTTCAAGAAATGGGAAAAAATCATAGACAGAA
AGAACTACGCGGTCACAAAAAATACAAGGATTTGTAGCAACCATTTCGTG
TACGGACAACCAAGAAAACAGGCGCCGCATCCGTCGTTACACCTGAGAGG
TAAATCGGTAGCCCGCAGAAGGCGTCTTGTCAAAAAGGCCTCTAGCGTTT
CTGATCCCAGTTCCCAAACGGTGACAACTGTTAATGTCGGTAAAGCCATC
GAACAAGCATCGCCACGGGAACCATTAAGCAAACCGTATTATGAAAGTAC
ATATCTAATGATGAAGGATGAACTGATATCCATTCTTGATGCGATCAGTA
GTGCCATGGGAACGGAGGACGATGTCGAAAAACTTCGAGACTTACTTCGC
TTGACGATCCAGCTGCTACGCGGAGTAAAAGAGCAACTAGAGACAGTTGT
AGAACTGAGGTCTTTAGATCAATTTGGTCTCAGGCGGTTTGAAGGGTCGG
ATGAGGACATACGGTTTTGGACCGGCTTCTACAGTTACGAAGCTCTCATG
GCATTTTATGATAACTTCATCGAGGCTAGTGAAGATAAGTTAAGGTATTG
GGCCTCTGTAAACGCACAGCGCACTGATGACACGCGTGCAAAGTGTGGTA
AAAAACACTCGACGCTACCAATCGACGAAATGTTCATGACGTTGGTAAAA
CTGAGGCAAGGTTCTGCAAACAAAGATCTAGCCGACAGGTTTGGCGTGTC
ACCACCTCATGTTGTCACCTGGATTAACTTCATGCACAGTGTACTGTCAG
ATATCAACATATGGATGTCAAAGAGCAAAGTCCGCAAGTACATGCCGAAG
TGTTTTCAGGGTTTGTACAAGGACGTGCGTGTGATCATTGACTGTACAGA
AATACACATGGAAAGACCATCGGACTTTGAAGTTCAAGCCGCAACGTATT
CTGTATACAAACACTGCAACACGCTGAAGGCGCTTATAGGTATCAGTCCA
TCAGGCGTACCAACATTCATATCTGATTTATTCGAAGGATCAATCAGCGA
TAACGACATTACACTACAGTCCGGACTGCTCAATCAATGTGAGCGAGAGG
ACGCCATCATGGCTCAGATAGGGGATTTACCATGAAAGAGGCAGTGGCAA
GGCGTGGCTTGCGTCTCGTGGTACCACATTTCTTGTTGGACAAACAGCAA
ATGGAAGTGAACAAACTGGTTGAGTCAGTGGCCCTGGCAAGAGTACGTAT
CCATGTGGAAAGATGTATGGGACGTATCAAGCAATGGAATTTCTTGTCTA
ACCGTGTCCCAATCACTTACTGGAAACAGATTAATCATATATTTCAAGTG
TGCACCAGACTTGTTTTATTCTGGCCACCACTTATCGATAGTGATAACTA
AACAGTATCTTAACATACTAATGTTTAAACAAGTAGTACAATTATTTCTG
GTATGAAACATTCTACGCCGACATGAGAGGGCAGTGCTTAATATATCAAT
CAGCGAATGTATCTGTCGAGAATAGAATGATGCATATTTGTCTATGATAA
GTAACACTGAATAATGATACGTTATTTTTTCACCAACATATATATATGAT
TAATCTGTTTCCAGTAAGTGATTGTGGTTGTAATATGACCAGCTGCTTCC
GCGCCGCGTGCCTGCGAAGCTGGTGTGTTACGCCTAATGGCGGTTATACC
AGCTATATGGATACAGATATAGAAATAAGATTTACATTAAACTGATACTT
ACATTACGTATAGCAAGCAGTAATTGTATTAAAGTTCTCAATGTACCACG
AGACGCAAGCCACGCCTTATAGCTGATATCGTTCTTATCATAAAATTGAA
ACATTTTGATGTATTAACGTATTGATATCAACGTTTTACTAGCTCTGACC
ATATGGGTTCGACAGCATCACAATGATAGAAAACGTGTTCACATGTCCTT
CTCTGAAATGGACAGTTCACGTAACTTAACTCTAGTTGGCTAAACATTTT
ATTAAAAAAGGTTTTCGGATATTATTATACCAGACATTTTTAATCCAGTG
CACCTACCGGTAATCCTGAATTGATACATTCCGTTTAACTCGATCTTTCT
TCTAGAAAAATCTATAGATTAGTTATCAGATTAGCTTCTTTAAAACGTTA
ATCATTTCTTTCCAAACTCCTGCAAAACTAGTGCTGGTACAATGAATTTG
GAGTGAAACTGCAAGAGTTTTGCTANCGATAAAAAGGCACCCGCTACGGG
TTATTGAACCTTCGAGAAATGCCCATGTGACTTGTTTTAATAGGAGATAT
TAAACAGGTACGGGGCAAAAGGAACAATTTCAGAACCGGCCTAATGTGAC
AAGAAACTTACCGGGTACACAAGCTGTGTTTGGATTCTCCCCGCGTTGAA
CTGAAACCCCGACAGCTTAACCATCTCTCCAGTTCTTCCTTGGTGTTGTC
TACGACAATCTCCGACGGTAATGTGGCTCCCTTTATACTACTTTCGTCTA
CTATTACGACTAAGTCATCCATTACGGCATGTAATGCAGTGTTAACAACG
CTAGACGTAGCATAAATAAAGCACGTCCACACACCTGTCTTTGAAAACTT
AAAATGATCTTTAATTCTTAACCGACCGTTCTAGAATGTTCTTTAGAACA
GGTGTTCGTACCTGCCGTGTCGGAACACCTGCGTCGCGGCACGTTGCGCC
CTCCTCAAACACCGACGCAAGCACTGACAGCACCGCGCTTCACAACGCTT
CACAATGTAAACATCGATTGACCACAAACTGTCCCGGCATTCATTGCGGT
AAACAAACTGT Coding sequence (CDS) from alignment at Sc0000009:2762888..2766398- >transcript:BL86030_cuf1 ID=transcript:BL86030_cuf1|Name=transcript:BL86030_cuf1|organism=Branchiostoma lanceolatum|type=CDS|length=2496bp|location=Sequence derived from alignment at Sc0000009:2762888..2766398- (Branchiostoma lanceolatum)
ATGTCCCATCGCTGCGCCGTTGTTGGATGCGATAATGACAGAAGGCACCC
AGAAAAATGGATAATCAAGAAACACGTAACGGACCATATGGGAAACGGTT
CTCTTGTTTTTCACAGTTGCCCCCTGAAACACTTCAAGAAATGGGAAAAA
ATCATAGACAGAAAGAACTACGCGGTCACAAAAAATACAAGGATTTGTAG
CAACCATTTCGTGTACGGACAACCAAGAAAACAGGCGCCGCATCCGTCGT
TACACCTGAGAGGTAAATCGGTAGCCCGCAGAAGGCGTCTTGTCAAAAAG
GCCTCTAGCGTTTCTGATCCCAGTTCCCAAACGGTGACAACTGTTAATGT
CGGTAAAGCCATCGAACAAGCATCGCCACGGGAACCATTAAGCAAACCGT
ATTATGAAAGTACATATCTAATGATGAAGGATGAACTGATATCCATTCTT
GATGCGATCAGTAGTGCCATGGGAACGGAGGACGATGTCGAAAAACTTCG
AGACTTACTTCGCTTGACGATCCAGCTGCTACGCGGAGTAAAAGAGCAAC
TAGAGACAGTTGTAGAACTGAGGTCTTTAGATCAATTTGGTCTCAGGCGG
TTTGAAGGGTCGGATGAGGACATACGGTTTTGGACCGGCTTCTACAGTTA
CGAAGCTCTCATGGCATTTTATGATAACTTCATCGAGGCTAGTGAAGATA
AGTTAAGGTATTGGGCCTCTGTAAACGCACAGCGCACTGATGACACGCGT
GCAAAGTGTGGTAAAAAACACTCGACGCTACCAATCGACGAAATGTTCAT
GACGTTGGTAAAACTGAGGCAAGGTTCTGCAAACAAAGATCTAGCCGACA
GGTTTGGCGTGTCACCACCTCATGTTGTCACCTGGATTAACTTCATGCAC
AGTGTACTGTCAGATATCAACATATGGATGTCAAAGAGCAAAGTCCGCAA
GTACATGCCGAAGTGTTTTCAGGGTTTGTACAAGGACGTGCGTGTGATCA
TTGACTGTACAGAAATACACATGGAAAGACCATCGGACTTTGAAGTTCAA
GCCGCAACGTATTCTGTATACAAACACTGCAACACGCTGAAGGCGCTTAT
AGGTATCAGTCCATCAGGCGTACCAACATTCATATCTGATTTATTCGAAG
GATCAATCAGCGATAACGACATTACACTACAGTCCGGACTGCTCAATCAA
TGTGAGCGAGAGGACGCCATCATGGCTCAGATAGGGGATTTACCATGAAT
GTCCCATCGCTGCGCCGTTGTTGGATGCGATAATGACAGAAGGCACCCAG
AAAAATGGATAATCAAGAAACACGTAACGGACCATATGGGAAACGGTTCT
CTTGTTTTTCACAGTTGCCCCCTGAAACACTTCAAGAAATGGGAAAAAAT
CATAGACAGAAAGAACTACGCGGTCACAAAAAATACAAGGATTTGTAGCA
ACCATTTCGTGTACGGACAACCAAGAAAACAGGCGCCGCATCCGTCGTTA
CACCTGAGAGGTAAATCGGTAGCCCGCAGAAGGCGTCTTGTCAAAAAGGC
CTCTAGCGTTTCTGATCCCAGTTCCCAAACGGTGACAACTGTTAATGTCG
GTAAAGCCATCGAACAAGCATCGCCACGGGAACCATTAAGCAAACCGTAT
TATGAAAGTACATATCTAATGATGAAGGATGAACTGATATCCATTCTTGA
TGCGATCAGTAGTGCCATGGGAACGGAGGACGATGTCGAAAAACTTCGAG
ACTTACTTCGCTTGACGATCCAGCTGCTACGCGGAGTAAAAGAGCAACTA
GAGACAGTTGTAGAACTGAGGTCTTTAGATCAATTTGGTCTCAGGCGGTT
TGAAGGGTCGGATGAGGACATACGGTTTTGGACCGGCTTCTACAGTTACG
AAGCTCTCATGGCATTTTATGATAACTTCATCGAGGCTAGTGAAGATAAG
TTAAGGTATTGGGCCTCTGTAAACGCACAGCGCACTGATGACACGCGTGC
AAAGTGTGGTAAAAAACACTCGACGCTACCAATCGACGAAATGTTCATGA
CGTTGGTAAAACTGAGGCAAGGTTCTGCAAACAAAGATCTAGCCGACAGG
TTTGGCGTGTCACCACCTCATGTTGTCACCTGGATTAACTTCATGCACAG
TGTACTGTCAGATATCAACATATGGATGTCAAAGAGCAAAGTCCGCAAGT
ACATGCCGAAGTGTTTTCAGGGTTTGTACAAGGACGTGCGTGTGATCATT
GACTGTACAGAAATACACATGGAAAGACCATCGGACTTTGAAGTTCAAGC
CGCAACGTATTCTGTATACAAACACTGCAACACGCTGAAGGCGCTTATAG
GTATCAGTCCATCAGGCGTACCAACATTCATATCTGATTTATTCGAAGGA
TCAATCAGCGATAACGACATTACACTACAGTCCGGACTGCTCAATCAATG
TGAGCGAGAGGACGCCATCATGGCTCAGATAGGGGATTTACCATGA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000009 | genome | Sc0000009:2762888..2766398 - |
Properties
| Property Name | Value |
|---|
| Transcript id | BL86030_cuf1 |
| Biotype | protein_coding |
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