|
|
Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL85987_cuf1 >transcript:BL85987_cuf1-protein ID=transcript:BL85987_cuf1-protein|Name=transcript:BL85987_cuf1|organism=Branchiostoma lanceolatum|type=polypeptide|length=512bp
MEFRGDPHARAAGAHTLPTDAEMSEFLGVIHGLVGQCIAKNSTQNRHEIS
YILSRLESAIRNLALISSTVLAIMSEPYPYHPGYLEQVLLACRHLQDDLE
QMHSFYANKGEEVDSYRFKVSDSEDYSRGRPRKHITEVQISYLRELGFTW
LKIAELLGVSFSTIKRRQREFDLVGSNYSDISEEDLDMTVVGLKRLLPNH
GETYLWGLLKSQGIYVTRQRLRDSIHRVDPINTALRWFLATSRRTYYVPC
PNALWHIDSHMKLIRWGFVFHGGIDGHSRAIVYLVCSTNNRAATVYEAFR
SAVAKWGVPARVRSDYGMENTKVALYMLVKRGGEKNPFLTGKSTHNQRIE
RLWREVHRCIVDVWRSLFYYMESEGMLDPSNPLHLFCLHYVFCPRINGTV
DAFVDGFNAHKVRTAHNLSPHQLWVEGTLKLWHSGRFAIESILQEPINET
YGIDWEGPVPELQVNNNIDVPQGLDVSEEQQRTLRARIDPLNFVDIYDTS
QYIQAVNIMSHV Run BLAST on NCBI mRNA from alignment at Sc0000019:3072365..3077629+ Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL85987_cuf1 ID=transcript:BL85987_cuf1|Name=transcript:BL85987_cuf1|organism=Branchiostoma lanceolatum|type=mRNA|length=5265bp|location=Sequence derived from alignment at Sc0000019:3072365..3077629+ (Branchiostoma lanceolatum)
TGCATGTGCAATTATGCAATGATTCACAGCAATGGCAGGCTTTATAAACA
GGACACTGGGGGACTCAGGTTTAGACATATCTCAATTATTGTCCCAAGTT
CCTTGATCCACCTTGGCAAGTGCTGATAATCTCAGGCATGAGGCTATAAA
GCTAAGCAGTAAAGAAGAAGAAGTGTGTTTTATAGGGAGCAGATCTTGTT
TTATACAGGGTATCAGTGCTTAATCATTTACATGTTATACATGTAGGTCA
CATGGTGCCTTGACAGTCTTGTTGCCTATTCCTGCCTTGCAATAATTGTC
CTTTATGGTTAGGTGTTTCCTGAGGGCCATCAGTCCCAAGGTTTCTGTTC
TGTCTGACAGAAACCTATAGAAACTAGACCACACAAGGGCTGACAACACA
CCAGCTGACTTGAGGACAGTGAATGAAGTATTCATATACAGGTGAGCCAA
TGCTTTGCAAGTTACATGTATGATGACAATCTTTTTCCTCTGATGTGTTC
AGCACACAGAGGCGTATACTGCACTACCAGTAACACACTTTAAGTTTGAA
ACACCATTCTGTGTACCACTCTACAGCTATTCAAGCAAAAGGATACATAG
TAGATTATGTGATTTTGATTATGTGCATCGCACTGATGATCCTTTTATAT
CATTAGATGTGTTCTGTGATGACTGCTCAGCAAACCAGCTGACTTGACGA
CATTGGGGAAATACAGACACTCCACAAGTGAGTCTTTTTTGTTCTAACGA
AAGGTCAATTATAGAGTCTACATGTTGTAATATGGGCTATTGATCAGTTC
GATTGCTCCATAGAGCAAAACCATATCAGCACAACTCAGTTGATTACCCT
AGCACATCCCACCCCAGAGACAGATCAGCCCTAACTTACTCCATCTGCTT
TACAATACATAGATTAACTCATGTGGAAGAACCGATGCAATACTTACCTG
ACTTTCTGATAAATAATAGATTGGTAGAGAAATTGATGAGTGGGGCCAAA
CTGATTGTCAGATATTTATAAAACTGGACTGATTTGGAAGGGCAGCTGTT
GGATCCTATATATGATCCTCAAGTGTCCACATGTATTTTATTACACAGCT
GACCTTCACACATGTACTTTGATATTCAAAAGATAAAATCTGCATCTTTC
TTTCCCTTGGACCTTACAGATAAACCACTGAGGCACGGCTGGTAGTCAAC
ATCCAAGAAGAGCCCTGTGACTAAGTCAATCTGTGAAGAGAAGTTCCTTA
GTCAAGAAAACAACCGGTATGTTGTCCCTTCTGCTGAATTGGTAATACCA
AGTTCACTTGGTCACCTTAAGTTACTTTTTTGTTAAAATGTTCTGTGTGT
TTCAAAAATGGTCTTTGAGATTAACACAGAGAGCAGAAGTACTGCAACAC
AAACACAGCTCGAGCCTAAACAGAGTCGGTCAGAGTCATGTATGTTCGAT
GTGGTGTTCGACATGATTGGTCTATTGCACTCCAGCAGCAGGACTGAACT
TTTGGGATCGGGGTATATTTCTACAAAGTATCAAAGAGGCTCTTTGTCTG
GTTTATTTCAATGCAAATAGAAGAATAGATTTTCCATAAAGTACATGTAC
TTACCAAAAGTTTCACATCCACATTATTAGTCATGGTGCATGCCACACAA
ATACACAACCATAACAAATGGGATATTGTCTTGCAGCTTTACAAAAGTAG
ATTTCTAATATTCTTAAATTTTCTTCATCACCTTCCCTGATGATAGGTTA
ATTGTTGTTATAGTTGTTGCCAATCTAGCTGAAATGCACTCCAAGCATTA
TTGCATACCTAGGACAACTGTTTAGTGTTCTTTGTTTGTTTTTTCTTCTT
AGATGGAGTTCAGAGGTGACCCCCATGCCAGAGCAGCTGGTGCGCATACT
TTGCCAACTGATGCAGAAATGAGTGAGTTTTTGGGTGTAATACATGGCCT
CGTTGGCCAGTGTATAGCCAAGAATAGTACCCAGAATAGACATGAGATAA
GTTATATCTTAAGCAGACTGGAGTCAGCAATAAGAAATCTTGCCTTGATC
AGTTCAACCGTACTGGCTATCATGAGTGAACCTTATCCATATCACCCTGG
ATACTTAGAACAAGTACTTTTGGCATGTAGGCATCTACAGGATGATTTAG
AACAGATGCATTCATTTTATGCAAATAAAGGAGAGGAAGTGGACTCATAC
AGGTTTAAAGTTTCAGACTCAGAGGACTACAGCAGGGGAAGACCTCGGAA
GCACATAACCGAGGTACAGATTTCATACCTGCGTGAACTAGGCTTTACCT
GGCTCAAAATTGCCGAACTACTAGGGGTCTCTTTTAGCACAATTAAGAGA
AGACAGAGGGAGTTTGATTTGGTGGGTAGCAACTATTCAGACATATCTGA
AGAAGACTTAGACATGACAGTAGTTGGTCTAAAGAGATTGCTGCCAAACC
ATGGTGAAACCTATCTCTGGGGACTTCTTAAGTCCCAAGGAATATATGTT
ACCAGGCAGAGACTTCGTGATTCAATTCACCGTGTTGACCCCATCAATAC
CGCCCTGCGATGGTTTCTTGCGACATCTCGCAGAACGTATTATGTGCCCT
GTCCCAATGCCCTGTGGCATATTGACAGCCATATGAAACTTATCAGATGG
GGATTCGTTTTTCATGGTGGTATCGATGGTCATTCAAGGGCAATTGTGTA
TCTGGTGTGCAGCACCAACAACAGAGCTGCGACAGTCTATGAGGCATTTC
GTTCAGCAGTTGCCAAGTGGGGTGTTCCAGCTCGTGTGCGATCAGACTAT
GGCATGGAAAATACAAAAGTAGCTTTGTACATGCTAGTTAAGAGAGGGGG
GGAGAAAAATCCGTTCCTAACTGGAAAGTCCACTCATAACCAGAGGATAG
AGCGTCTGTGGCGGGAAGTGCACCGGTGCATAGTAGATGTCTGGCGCTCC
TTATTCTACTACATGGAGTCTGAAGGAATGCTAGATCCTTCCAATCCCCT
ACACCTGTTCTGTCTCCACTATGTCTTCTGTCCCAGAATCAACGGAACAG
TTGATGCCTTTGTTGATGGCTTCAATGCCCACAAAGTCAGGACAGCCCAT
AATTTGTCTCCACATCAACTATGGGTGGAAGGTACCCTGAAACTATGGCA
CTCGGGGAGATTTGCCATAGAGAGCATTCTCCAGGAGCCAATTAATGAGA
CATATGGCATTGACTGGGAGGGGCCTGTGCCTGAGTTGCAGGTTAACAAC
AATATTGATGTTCCACAAGGTCTGGATGTATCAGAAGAGCAACAGAGAAC
CTTGAGAGCACGCATTGATCCTTTAAACTTTGTTGATATTTATGATACTT
CACAATACATTCAGGCTGTAAATATCATGTCCCATGTGTAAACTTTCTTT
ATTTGTATATAGTTATCTAGAACTGTCCAAAATAATTCTATTTATATATA
AATCAAAGCATGCTGTCAGGATTCTCTGTTGCTCTTCTGATACTGCATCC
CAGATCCAGACCTTGTGGGACATCACTAATGTAACTGCAGTGTAATTTCA
GGTTTTGATGTATGATCAGTTATTTTGCAAATCCTAATCTAATTTTCATA
TTCAATGAGGAAATTTCATAACCCTGCTGCATTCCATGATAGGACTATTC
AAACATGTGGTATTTGTAACAGAGGCACATTGATACATGTTTTTTTTGGC
ATTTTGAAGTTATGTGAATCTCATTTGCATAATGAGAAAAGCTAGAATAA
GATTCATACTATTATTCATAGATATTTTTTTATTATAACATCTGTTATTT
GGGTATAGAAGATGATAAACTGATCATGATTTATGCAATTGAGGACCTTA
TTTGCTTTATCAATTAGAAACATTCTGGAAATGACTATAGCGCCAGACTT
CTACTATGCACTGCTCTCTTCTCACACACCCAGACCTTTTGGAACATTGA
TATTGTGTCATTTGAAAAAGCAAAACTGTTCACAGTTGTTCATTCACTGG
CAGAGACATTACTAAAAGGGATTTTCCCCCACACCTCTTTGAATTTTCTT
ATCTGTTGTATGTGAACTTTATGAACATTCAAAGCAAATGTGCATTGTTT
AGTATATATGACCATTATGAAACTGCCCTAAATAATTTTTTCCAGCAGTA
TTTTTTAGAGTGCCCTTTCAGGACTCGAAACACTGGTTGCATGTGTACCA
AAAATTATAACTGTTTACCTATTTTTGACTGGGTGCACCTGTGAACGTTG
ATATTTTTGTATTCTACAGGGTAGAAATATTGTATACTACACTGTAGTAT
GCAGAATATTCCTAAATTTCAGTGTCAGAAAAAGAAATAATACAATTTTT
GTTGTACTTTGATGTACAACTTGTTTAAAATTTTAAAGTTATCTTTAGAA
TTAAAGATTGTTCTTAGAGCTGGATGAGGGGTTGTCATTTCATTTTCTTG
TTGCCGGCACTCTATATTTATATGATGTGCATCCAAATTTCTTTCTGTGC
ACCTATTCCAAAAATTCTTTTGGGGCCCTCCCTTTCAATGCCTCATAGAC
TGTTGCATCAATGTTGTGCCACCTGTGAAATGGCTGGAGGAATACATAGA
AAATACTGTAAATGCATTTAAGTTTGCGTTTTTATTTCGAGCCAAGGCAA
AAATGGAGTGCTCGCTGTGGTTTTAAGTCTGTTGCAGCCCCTTGGTCACA
TACTGCTACACTAGCTACAGTATTGGACAAAAAAGTTCGCAGTGCTTTTG
AGTTCGCCACGAAATGCTTTCTAGACAAACTGACATGTGATATGCATGTA
GTCTACTTCTGTCTCCAGCAAATCTTAAGGCTGGTATGTGTTATAACACC
TTAATATGTACCTGTATTCTAAACACTGGTTGATTGTTGATTTTTCAAAT
GTCAAGAAATACATTGATTCCATTGGAAGCCGGACATTTTACATGCTAAC
AAAATGTTCTGTGAGGATTGAGGACATTCGGAGTTCTCTCTGTGCATTTG
TAGTATAGTATTTCTTTTCTGTCAAAAGAAATCATCTACAGATTGAAAGT
ACCCCTTGGCAAGCATTTCCAATAATAAGAATGAATACTGTACAGTTTGA
TTGTTAATGTTGGCTATTTGAAAATCAATCATATAGCACACAATGGAAAT
ACAGTGTAGTTGATATTTTCCTACATGACTTTTGCTGTGTGAAGATGGTT
TTATTTTGTAATAAATGAAAATGAAAGAAATCTGATGTTAGTTGTTTTTG
TCTGCAATCTGAGGC Coding sequence (CDS) from alignment at Sc0000019:3072365..3077629+ >transcript:BL85987_cuf1 ID=transcript:BL85987_cuf1|Name=transcript:BL85987_cuf1|organism=Branchiostoma lanceolatum|type=CDS|length=1539bp|location=Sequence derived from alignment at Sc0000019:3072365..3077629+ (Branchiostoma lanceolatum)
ATGGAGTTCAGAGGTGACCCCCATGCCAGAGCAGCTGGTGCGCATACTTT
GCCAACTGATGCAGAAATGAGTGAGTTTTTGGGTGTAATACATGGCCTCG
TTGGCCAGTGTATAGCCAAGAATAGTACCCAGAATAGACATGAGATAAGT
TATATCTTAAGCAGACTGGAGTCAGCAATAAGAAATCTTGCCTTGATCAG
TTCAACCGTACTGGCTATCATGAGTGAACCTTATCCATATCACCCTGGAT
ACTTAGAACAAGTACTTTTGGCATGTAGGCATCTACAGGATGATTTAGAA
CAGATGCATTCATTTTATGCAAATAAAGGAGAGGAAGTGGACTCATACAG
GTTTAAAGTTTCAGACTCAGAGGACTACAGCAGGGGAAGACCTCGGAAGC
ACATAACCGAGGTACAGATTTCATACCTGCGTGAACTAGGCTTTACCTGG
CTCAAAATTGCCGAACTACTAGGGGTCTCTTTTAGCACAATTAAGAGAAG
ACAGAGGGAGTTTGATTTGGTGGGTAGCAACTATTCAGACATATCTGAAG
AAGACTTAGACATGACAGTAGTTGGTCTAAAGAGATTGCTGCCAAACCAT
GGTGAAACCTATCTCTGGGGACTTCTTAAGTCCCAAGGAATATATGTTAC
CAGGCAGAGACTTCGTGATTCAATTCACCGTGTTGACCCCATCAATACCG
CCCTGCGATGGTTTCTTGCGACATCTCGCAGAACGTATTATGTGCCCTGT
CCCAATGCCCTGTGGCATATTGACAGCCATATGAAACTTATCAGATGGGG
ATTCGTTTTTCATGGTGGTATCGATGGTCATTCAAGGGCAATTGTGTATC
TGGTGTGCAGCACCAACAACAGAGCTGCGACAGTCTATGAGGCATTTCGT
TCAGCAGTTGCCAAGTGGGGTGTTCCAGCTCGTGTGCGATCAGACTATGG
CATGGAAAATACAAAAGTAGCTTTGTACATGCTAGTTAAGAGAGGGGGGG
AGAAAAATCCGTTCCTAACTGGAAAGTCCACTCATAACCAGAGGATAGAG
CGTCTGTGGCGGGAAGTGCACCGGTGCATAGTAGATGTCTGGCGCTCCTT
ATTCTACTACATGGAGTCTGAAGGAATGCTAGATCCTTCCAATCCCCTAC
ACCTGTTCTGTCTCCACTATGTCTTCTGTCCCAGAATCAACGGAACAGTT
GATGCCTTTGTTGATGGCTTCAATGCCCACAAAGTCAGGACAGCCCATAA
TTTGTCTCCACATCAACTATGGGTGGAAGGTACCCTGAAACTATGGCACT
CGGGGAGATTTGCCATAGAGAGCATTCTCCAGGAGCCAATTAATGAGACA
TATGGCATTGACTGGGAGGGGCCTGTGCCTGAGTTGCAGGTTAACAACAA
TATTGATGTTCCACAAGGTCTGGATGTATCAGAAGAGCAACAGAGAACCT
TGAGAGCACGCATTGATCCTTTAAACTTTGTTGATATTTATGATACTTCA
CAATACATTCAGGCTGTAAATATCATGTCCCATGTGTAA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000019 | genome | Sc0000019:3072365..3077629 + |
Properties
| Property Name | Value |
|---|
| Transcript id | BL85987_cuf1 |
| Biotype | protein_coding |
|
