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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL85983_cuf0 >transcript:BL85983_cuf0-protein ID=transcript:BL85983_cuf0-protein|Name=transcript:BL85983_cuf0|organism=Branchiostoma lanceolatum|type=polypeptide|length=244bp
SVKVGQGPITSELDPALQELHVQRQAYHSGSFIGNHVNTMLQDESIKKLT
AVITSVVTDIMEKYDDLPLTLVPKARETAQKYRQLFELFASCHKKYSHAG
QMDDSAIDELGTAITAFMTYYREKVPNGSVPIKMHMLEHHVVPCVRKWRF
GLGFLGEQGLEQVHALFNNIGRTTSGIADPVAKLNSTLRNQLIGVSPDHT
GGVPDPVPRKKRISPIMFSNHDIIYTIRTRSINHNIQMYKHVLK Run BLAST on NCBI mRNA from alignment at Sc0000284:172832..173824+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL85983_cuf0 ID=transcript:BL85983_cuf0|Name=transcript:BL85983_cuf0|organism=Branchiostoma lanceolatum|type=mRNA|length=993bp|location=Sequence derived from alignment at Sc0000284:172832..173824+ (Branchiostoma lanceolatum)
CGTCAGTGAAGGTAGGGCAGGGTCCAATAACATCTGAGCTAGACCCTGCG
CTTCAGGAGTTGCACGTGCAAAGACAAGCCTACCACAGCGGCTCGTTCAT
AGGCAACCATGTCAACACTATGCTTCAGGCAAGTACTTGATAACAATTTT
CAGTGTTTTGTTTCTATAACAAACCATCATTTACGAATTTCGAATCAATT
CTGATGACAGTTCATTTACATACACAGGACGAATCCATCAAAAAGCTGAC
AGCAGTCATCACCTCCGTTGTGACAGACATAATGGAGAAGTATGATGACC
TGCCTCTTACCCTGGTTCCAAAGGCAAGAGAAACAGCTCAAAAGTACCGT
CAACTTTTTGAGCTGTTTGCTTCTTGCCACAAGAAGTATTCCCATGCTGG
ACAAATGGATGACAGTGCAATTGATGAGCTAGGTAAGATATTCCTTAATT
CTCTTATTAAATTGGTGTGGTACTATTATTGTAATGGATGAAGTGATGTG
TTGATATTATCTTTAATAATTAAGTCTTTCTATCTAACCTATTCCAGGCA
CAGCCATCACAGCATTTATGACGTACTACAGGGAGAAAGTACCAAATGGG
TCGGTACCCATCAAGATGCACATGCTTGAGCATCATGTAGTACCTTGTGT
CCGAAAATGGAGGTTCGGTTTGGGCTTCCTTGGTGAGCAGGGTTTGGAGC
AGGTCCATGCCTTGTTCAACAACATTGGAAGGACAACATCCGGCATAGCC
GATCCAGTGGCCAAGCTTAACTCGACCCTGAGGAACCAACTCATCGGTGT
GAGCCCCGACCATACTGGTGGTGTTCCCGACCCTGTGCCGAGAAAAAAGA
GAATTAGTCCTATCATGTTCAGCAATCATGACATAATATATACTATTAGA
ACTAGGAGTATCAATCACAACATTCAGATGTACAAACATGTTCTGAAGTG
ATGATAAGTGGAATTTTGTATCTAGAGCATATTAGCCACTTGC Coding sequence (CDS) from alignment at Sc0000284:172832..173824+ >transcript:BL85983_cuf0 ID=transcript:BL85983_cuf0|Name=transcript:BL85983_cuf0|organism=Branchiostoma lanceolatum|type=CDS|length=2205bp|location=Sequence derived from alignment at Sc0000284:172832..173824+ (Branchiostoma lanceolatum)
TCAGTGAAGGTAGGGCAGGGTCCAATAACATCTGAGCTAGACCCTGCGCT
TCAGGAGTTGCACGTGCAAAGACAAGCCTACCACAGCGGCTCGTTCATAG
GCAACCATGTCAACACTATGCTTCAGGACGAATCCATCAAAAAGCTGACA
GCAGTCATCACCTCCGTTGTGACAGACATAATGGAGAAGTATGATGACCT
GCCTCTTACCCTGGTTCCAAAGGCAAGAGAAACAGCTCAAAAGTACCGTC
AACTTTTTGAGCTGTTTGCTTCTTGCCACAAGAAGTATTCCCATGCTGGA
CAAATGGATGACAGTGCAATTGATGAGCTAGGCACAGCCATCACAGCATT
TATGACGTACTACAGGGAGAAAGTACCAAATGGGTCGGTACCCATCAAGA
TGCACATGCTTGAGCATCATGTAGTACCTTGTGTCCGAAAATGGAGGTTC
GGTTTGGGCTTCCTTGGTGAGCAGGGTTTGGAGCAGGTCCATGCCTTGTT
CAACAACATTGGAAGGACAACATCCGGCATAGCCGATCCAGTGGCCAAGC
TTAACTCGACCCTGAGGAACCAACTCATCGGTGTGAGCCCCGACCATACT
GGTGGTGTTCCCGACCCTGTGCCGAGAAAAAAGAGAATTAGTCCTATCAT
GTTCAGCAATCATGACATAATATATACTATTAGAACTAGGAGTATCAATC
ACAACATTCAGATGTACAAACATGTTCTGAAGTGATCAGTGAAGGTAGGG
CAGGGTCCAATAACATCTGAGCTAGACCCTGCGCTTCAGGAGTTGCACGT
GCAAAGACAAGCCTACCACAGCGGCTCGTTCATAGGCAACCATGTCAACA
CTATGCTTCAGGACGAATCCATCAAAAAGCTGACAGCAGTCATCACCTCC
GTTGTGACAGACATAATGGAGAAGTATGATGACCTGCCTCTTACCCTGGT
TCCAAAGGCAAGAGAAACAGCTCAAAAGTACCGTCAACTTTTTGAGCTGT
TTGCTTCTTGCCACAAGAAGTATTCCCATGCTGGACAAATGGATGACAGT
GCAATTGATGAGCTAGGCACAGCCATCACAGCATTTATGACGTACTACAG
GGAGAAAGTACCAAATGGGTCGGTACCCATCAAGATGCACATGCTTGAGC
ATCATGTAGTACCTTGTGTCCGAAAATGGAGGTTCGGTTTGGGCTTCCTT
GGTGAGCAGGGTTTGGAGCAGGTCCATGCCTTGTTCAACAACATTGGAAG
GACAACATCCGGCATAGCCGATCCAGTGGCCAAGCTTAACTCGACCCTGA
GGAACCAACTCATCGGTGTGAGCCCCGACCATACTGGTGGTGTTCCCGAC
CCTGTGCCGAGAAAAAAGAGAATTAGTCCTATCATGTTCAGCAATCATGA
CATAATATATACTATTAGAACTAGGAGTATCAATCACAACATTCAGATGT
ACAAACATGTTCTGAAGTGATCAGTGAAGGTAGGGCAGGGTCCAATAACA
TCTGAGCTAGACCCTGCGCTTCAGGAGTTGCACGTGCAAAGACAAGCCTA
CCACAGCGGCTCGTTCATAGGCAACCATGTCAACACTATGCTTCAGGACG
AATCCATCAAAAAGCTGACAGCAGTCATCACCTCCGTTGTGACAGACATA
ATGGAGAAGTATGATGACCTGCCTCTTACCCTGGTTCCAAAGGCAAGAGA
AACAGCTCAAAAGTACCGTCAACTTTTTGAGCTGTTTGCTTCTTGCCACA
AGAAGTATTCCCATGCTGGACAAATGGATGACAGTGCAATTGATGAGCTA
GGCACAGCCATCACAGCATTTATGACGTACTACAGGGAGAAAGTACCAAA
TGGGTCGGTACCCATCAAGATGCACATGCTTGAGCATCATGTAGTACCTT
GTGTCCGAAAATGGAGGTTCGGTTTGGGCTTCCTTGGTGAGCAGGGTTTG
GAGCAGGTCCATGCCTTGTTCAACAACATTGGAAGGACAACATCCGGCAT
AGCCGATCCAGTGGCCAAGCTTAACTCGACCCTGAGGAACCAACTCATCG
GTGTGAGCCCCGACCATACTGGTGGTGTTCCCGACCCTGTGCCGAGAAAA
AAGAGAATTAGTCCTATCATGTTCAGCAATCATGACATAATATATACTAT
TAGAACTAGGAGTATCAATCACAACATTCAGATGTACAAACATGTTCTGA
AGTGA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000284 | genome | Sc0000284:172832..173824 + |
Properties
| Property Name | Value |
|---|
| Transcript id | BL85983_cuf0 |
| Biotype | protein_coding |
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