transcript:BL85956_cuf0 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL85956_cuf0
Unique Nametranscript:BL85956_cuf0
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



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Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL85956_cuf0

>transcript:BL85956_cuf0-protein ID=transcript:BL85956_cuf0-protein|Name=transcript:BL85956_cuf0|organism=Branchiostoma lanceolatum|type=polypeptide|length=117bp
GTLTHSNPCTETLTHSNSCTETLTHSNSCTETLTHSNSCTETLTHSNCCT
ETLTQSNSCTKTLTHSNSCTGTLTHSNSCTKTLTHSNSCTKTLTHYNCCT
ETLTHSIPCTETLTHSN
Run BLAST on NCBI

mRNA from alignment at Sc0000308:130451..131695+

Legend: CDSpolypeptideexonthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL85956_cuf0 ID=transcript:BL85956_cuf0|Name=transcript:BL85956_cuf0|organism=Branchiostoma lanceolatum|type=mRNA|length=1245bp|location=Sequence derived from alignment at Sc0000308:130451..131695+ (Branchiostoma lanceolatum)
GGAACTCTAACTCATTCTAACCCCTGCACAGAAACTCTAACTCATTCTAA
CTCCTGCACAGAAACTCTAACTCATTCTAACTCCTGCACAGAAACTCTAA
CTCATTCTAACTCCTGCACAGAAACTCTAACTCATTCTAACTGCTGCACA
GAAACTCTAACTCAATCTAACTCCTGCACAAAAACTCTAACTCATTCTAA
CTCATGCACAGGAACTCTAACTCATTCTAACTCCTGCACAAAAACTCTAA
CTCATTCTAACTCCTGCACAAAAACTCTAACTCATTATAACTGCTGCACA
GAAACTCTAACTCATTCTATCCCCTGCACAGAAACCCTAACTCATTCTAA
CTGATGCACAGAAACCCTCACTCATCCTAACTCCTGCGCAGAAACTCATT
CTAACTTCTGCACACCTTAGATAGTTATCACTGGACGGAAAGTAGCAGTA
AAACAGCAGTGATGAGTGTGAACAGCAGAGCCAGGGTAGACCTGGGGGAA
TCTGCGCCAGACGCCGGGTCCTCTGGCACTGGCCAGCTGATGGTGTGACG
AGCGTTCATGGCCAGGATGATATCTTCCAGGTACCACATCTGTAGAGGGA
GGGGGGCAGTGACGTTAGCAAACATCAGCAGGGACTGTAAGTGTTACCTT
AGAGGTGTTTGATGATTGAATTGCTAACGGTCGGTTTTAAGTAACGTCAA
AGTTTTAAACGAAATTCCTGGCACATATGCCCTTTCAGACACCATTTCTA
CCTTAGTTAAACGTCACAGTTATGAAAGCTGGCAAACAAAATGAACAAAT
ACCCCCACTAATTCCTTTCCAAAGGAATCGCCCTAAACCGTGATAATATG
TGAAAAATAAACAGATGCCGTTCAAAAGAAACTGGTCATCAGATCGAAAT
ACACGATGTACGCATATATGTACCCCCGCAAAGTCATTAGCATTCGTTGA
TAATTTCTAATAGTTATTTAGAATCTATAAGAAAAACTCTGAACTTGCAA
AATGTGTTGGTACATTGAGGGGAAAGATATATAGCTTTGGTAGCCAGATC
TTGGGACCTACATTTTCCACCCCGTCTGTTGTCTTGATGGCAGAAGCCGC
CACTTTGTTGCCGTCAACAGTGACGTCATCAGGCACGCCCTCTGACCCCA
TGACTCTGACGGTGGCGAAATGCAGCTCGGGACTTGGGGAGTAGGTGTCA
TGGTCGACACTGATGCTCAAAACGCCCTGGGGAAAAGCGAGTGGC

Coding sequence (CDS) from alignment at Sc0000308:130451..131695+

>transcript:BL85956_cuf0 ID=transcript:BL85956_cuf0|Name=transcript:BL85956_cuf0|organism=Branchiostoma lanceolatum|type=CDS|length=354bp|location=Sequence derived from alignment at Sc0000308:130451..131695+ (Branchiostoma lanceolatum)
GGAACTCTAACTCATTCTAACCCCTGCACAGAAACTCTAACTCATTCTAA
CTCCTGCACAGAAACTCTAACTCATTCTAACTCCTGCACAGAAACTCTAA
CTCATTCTAACTCCTGCACAGAAACTCTAACTCATTCTAACTGCTGCACA
GAAACTCTAACTCAATCTAACTCCTGCACAAAAACTCTAACTCATTCTAA
CTCATGCACAGGAACTCTAACTCATTCTAACTCCTGCACAAAAACTCTAA
CTCATTCTAACTCCTGCACAAAAACTCTAACTCATTATAACTGCTGCACA
GAAACTCTAACTCATTCTATCCCCTGCACAGAAACCCTAACTCATTCTAA
CTGA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL85956gene:BL85956Branchiostoma lanceolatumgene
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL85956_cuf0-E1BL85956_cuf0-E1-1564476830-432052Branchiostoma lanceolatumexon
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL85956_cuf0transcript:BL85956_cuf0-proteinBranchiostoma lanceolatumpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000308genomeSc0000308:130451..131695 +
Properties
Property NameValue
Transcript idBL85956_cuf0
Biotypeprotein_coding