transcript:BL85946_cuf0 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL85946_cuf0
Unique Nametranscript:BL85946_cuf0
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



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Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL85946_cuf0

>transcript:BL85946_cuf0-protein ID=transcript:BL85946_cuf0-protein|Name=transcript:BL85946_cuf0|organism=Branchiostoma lanceolatum|type=polypeptide|length=108bp
MTSLLRSDNMAFLTSANFCHPQQLAEVRMTSLLSSDNMAFLTSANFCHPQ
PLAEVRMTSLLTSYSIGFLTSANFCHPRPLAEVRMTSLPTSDNIGFLPMA
DGKSRSYI
Run BLAST on NCBI

mRNA from alignment at Sc0000335:222653..223438-

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL85946_cuf0 ID=transcript:BL85946_cuf0|Name=transcript:BL85946_cuf0|organism=Branchiostoma lanceolatum|type=mRNA|length=786bp|location=Sequence derived from alignment at Sc0000335:222653..223438- (Branchiostoma lanceolatum)
CGCTAACTTCATTAAAAAAATGACAGGATAGTTTCCTTTTCCATGCTTTT
CCAAAAGACGGAAACTCTTTTCATGACCCACCTTCTCTCTTTACTGATTA
ACAATATTCAAGTTATATAGGTAGTTAAAGATATTCAAGACATATATCTT
TAAAAGACTATCTAAAATATCCCCTGGCAAAAGTTAGGATGAAATCGCAT
CCTAACTTCTGCCAACTTCTTCCACCCCTAGCCACTGGCAGAAGTTAGGA
TGACGTCACTCCTACGTTCAGACAACATGGCATTTCTAACTTCTGCCAAC
TTCTGCCACCCCCAGCAACTGGCAGAAGTTAGGATGACGTCACTCCTAAG
TTCAGACAACATGGCATTTCTAACTTCTGCCAACTTCTGCCACCCCCAGC
CGCTGGCAGAAGTTAGGATGACGTCACTCCTAACTTCATACAGCATCGGA
TTTCTAACTTCTGCCAACTTCTGCCACCCCCGGCCGCTGGCAGAAGTTAG
GATGACGTCACTCCCTACTTCGGACAACATCGGATTTCTTCCGATGGCTG
ACGGAAAATCCCGAAGTTATATATGACGTAACCCGATTTCAACTTCTGCC
AACTTCTGCCACTTCACCCTGATACTGGACATGCATGGCCCCTTGACCGT
AGCATTATGAGGCGTGGAGTAACAAAGATACTGATCGATTGGTATGTGAA
TTGTGTCGGAAGTGTCGGAGTGTTTTACATCATTACCTTCTATCGTTAAC
ATTATCATATCCCACTGGGTATCACAGAGATTTTAG

Coding sequence (CDS) from alignment at Sc0000335:222653..223438-

>transcript:BL85946_cuf0 ID=transcript:BL85946_cuf0|Name=transcript:BL85946_cuf0|organism=Branchiostoma lanceolatum|type=CDS|length=327bp|location=Sequence derived from alignment at Sc0000335:222653..223438- (Branchiostoma lanceolatum)
ATGACGTCACTCCTACGTTCAGACAACATGGCATTTCTAACTTCTGCCAA
CTTCTGCCACCCCCAGCAACTGGCAGAAGTTAGGATGACGTCACTCCTAA
GTTCAGACAACATGGCATTTCTAACTTCTGCCAACTTCTGCCACCCCCAG
CCGCTGGCAGAAGTTAGGATGACGTCACTCCTAACTTCATACAGCATCGG
ATTTCTAACTTCTGCCAACTTCTGCCACCCCCGGCCGCTGGCAGAAGTTA
GGATGACGTCACTCCCTACTTCGGACAACATCGGATTTCTTCCGATGGCT
GACGGAAAATCCCGAAGTTATATATGA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL85946gene:BL85946Branchiostoma lanceolatumgene
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL85946_cuf0-E1BL85946_cuf0-E1-1564476830-440853Branchiostoma lanceolatumexon
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL85946_cuf0transcript:BL85946_cuf0-proteinBranchiostoma lanceolatumpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000335genomeSc0000335:222653..223438 -
Properties
Property NameValue
Transcript idBL85946_cuf0
Biotypeprotein_coding