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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL85831_cuf0 >transcript:BL85831_cuf0-protein ID=transcript:BL85831_cuf0-protein|Name=transcript:BL85831_cuf0|organism=Branchiostoma lanceolatum|type=polypeptide|length=448bp
MDQRTCGHKPSPRSKLTGHKIKHTGEKPYKCDQCDYSTAHKSLLNQHKFR
HTGEKPYVCEECGFRTVDPSNLTKHRRKHTGEKPYKCDQCDYAAAQKPHL
RQHVMLKHSDKKLYLCGECGYRAAIKVCLTRHMRKHTGEKPYTCDQCDYS
ASEKNCIDQHIRIKHTGEKPYMCGECGYRTAVRSALSKHARTHTGEKPYK
CDQCDYSATQKCSVDRHFLAKHIGEKPLMCGECGFRTAVPAALVVHMKKH
TDDKQYMCEECGYKTVDKSTMSKHMRKHTGEKPFTCGECGYKTADRSALY
RHLRKHTGEKPYKCDYCDYSAAQKSDSDRHVMVHHTGEKPYMCAECGYRT
ADRSSLFRHMTTHTGKRPYKCNQCKYSSTQKRDLDRHVMTKHTGERPYMC
VICGYRAAIRSDLSQHMRTHDKPFKCDQCDYSTTRKHRFKEHMVKHTG Run BLAST on NCBI mRNA from alignment at Sc0000143:148..3023+ Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL85831_cuf0 ID=transcript:BL85831_cuf0|Name=transcript:BL85831_cuf0|organism=Branchiostoma lanceolatum|type=mRNA|length=2876bp|location=Sequence derived from alignment at Sc0000143:148..3023+ (Branchiostoma lanceolatum)
CTTTAATCCCTTATATGATTTTCCGCCATTTTGTTTCTTCCTGAAAAAGT
CACCTGTTGATCTGACGAAACTTTTCGTATTCTTCAAGCGTCATTTTACT
TGGGACGTATCATACACAGACAGGTAATACATTTTCAAACTTCTACAGCT
TCCTGGGATATGCTTGTAAAACGCTAACCTAACTTTATGGGTGTGTTTAT
AGGTAACTTATGACGTCATAAAATGCAGGTGGGGAGGGGGTGGAAAATTT
TAATGTAGTAAGATTCTAACCAAACGTAACAACCCATACCAATATGATAC
CCCTGAAACAAAGAAACTGGCATATAGAATGAGGGATAATCTTTGACCAA
CCAGCGGGAATGCGAAGAATTACAAGTTAAACAGGTCTACTAGTACTTTA
CAAACTTTGTCTTCGAGTCGTAATACTGGTAGTGTACCAATGACGTCACT
ATAATTTGACCTAGTGGAAACAAACTACCATAAACTATCTATTCAACCGT
AACCAGATTTACAAAGTAATAATCCTAAGGAACAAAATGTAATTTAGGAT
GTTTTCGCCACATTGAAGTTTAATTCACTTAGCTGACTCTATATGTTGCT
GTTAGGCAGGTTGTGTTGTAAGCAGTTTGTTGTACATATAATGATGTACA
GTGTTTTTTTTATACATATGATGTGACATTCTGTAGACACATTAACAATG
ACAAACAATTTAGGACTGGTAAAGTTGTCGAACTACTAGTAGGAGGTCTT
TTGTATAAGTGAGGGAGGGGGGTAGATACATACTACAAGGAAGGTCATTT
TCCCCACTCAATATTATTTGATAGATACAAGTTTTTATTTCTCTTCTTTC
TTTCCTAACAGTTGCCAAATATGGATCAGCGGACCTGTGGGCACAAGCCA
TCCCCGAGGAGCAAGTTGACAGGACATAAGATAAAGCATACAGGAGAAAA
ACCTTACAAATGTGACCAGTGTGACTATTCTACAGCACATAAAAGCCTCT
TAAACCAACACAAATTCAGACACACCGGTGAAAAACCCTACGTGTGTGAG
GAGTGTGGATTTAGAACAGTTGATCCCTCTAATCTGACCAAGCATAGGAG
AAAACATACAGGTGAGAAACCATATAAATGTGACCAATGTGACTATGCTG
CTGCACAGAAGCCTCATTTACGCCAGCACGTCATGTTGAAACACAGCGAC
AAGAAACTCTACCTGTGTGGGGAGTGTGGGTACAGGGCTGCTATAAAGGT
GTGCCTGACCAGGCACATGAGAAAACATACAGGTGAAAAACCGTACACTT
GTGACCAGTGTGACTACTCAGCTTCAGAAAAAAACTGTATAGACCAACAT
ATTAGGATAAAGCATACAGGTGAAAAACCCTACATGTGTGGGGAGTGTGG
ATACAGGACGGCAGTTAGAAGTGCCTTATCCAAACATGCTAGAACGCATA
CTGGCGAGAAACCGTACAAATGTGACCAGTGCGACTATTCTGCAACACAG
AAATGCAGCGTCGACCGACACTTCCTTGCAAAACACATCGGTGAGAAACC
TTTAATGTGTGGAGAGTGTGGGTTCAGAACGGCAGTTCCAGCTGCCCTTG
TCGTACATATGAAAAAACATACTGATGACAAGCAATACATGTGTGAGGAG
TGTGGATACAAGACAGTCGATAAGTCTACCATGTCCAAACACATGAGAAA
ACATACAGGTGAAAAACCCTTTACGTGTGGGGAGTGCGGATACAAGACAG
CGGACAGATCAGCTCTATACCGACATTTGAGAAAACACACCGGTGAGAAA
CCCTACAAATGTGACTACTGTGACTATTCAGCTGCACAGAAAAGTGACTC
TGACCGCCACGTCATGGTACACCACACCGGTGAAAAGCCTTACATGTGCG
CGGAGTGTGGATACAGGACAGCTGACAGGTCTTCTCTATTCCGACATATG
ACTACGCACACAGGAAAAAGACCCTACAAATGCAACCAGTGTAAATATTC
TTCTACTCAGAAACGAGATCTTGACCGACACGTCATGACAAAACACACCG
GTGAGAGACCCTACATGTGTGTTATATGTGGATACAGGGCGGCTATTAGG
TCTGACCTATCACAACATATGAGAACACATGACAAACCCTTCAAGTGTGA
TCAGTGCGACTATTCTACAACACGAAAACATAGGTTTAAAGAACACATGG
TTAAACACACTGGTTAGAAAACCTGTAGTTGAGATCATTGTGGCTTCTGT
ACAGTAAACTTGTTATTGAAGCAATAGGTGGCAAAATGCAGTAGGAAAAA
GAGTTCAGAGACCTCATACCTACAAGAAATATTTCGAGCCTTTGTAGATT
TATCATTCTATTATTTTTTTATTTATTGGTTCGGCATGTTGCCAGGGTTA
CCCAACTAGCCAGAGGCTATTACTAAGGGCGAACCCATGTGCGGCCGACT
GTATAATATAATTATCATTATATTGATAATGCTGCAATTAGCATAATCTA
TTTAAAATGATGGTCTTTGCTACCAAAATAACATAAATTGTGTGTGTAAA
GTCCTTTCTTTTGGCAGAATGCCATGTTTACATTTCATCATAAATTATGC
AAATGACGAGACATTTACATAATATAGACATAGTGATGTACATCTTCAAC
AAACTTACACATAGAATGCAAGTATGTAATTCCTACCGTTTGCAACAAAG
GCATTATGGCACTTACGTATGAATTATGCAAACAAGGCCCTTATTGGCAT
AATTGTCATCTGTAGATGTTCCACCTACCTTAAATCAAATATGCTACATG
TGTTAAAGTTCTATTATGGAAAACCCTGCAAGTATAGATTTTCCTCATTA
ATAATTCAAATAAAGCACTAATTTGC Coding sequence (CDS) from alignment at Sc0000143:148..3023+ >transcript:BL85831_cuf0 ID=transcript:BL85831_cuf0|Name=transcript:BL85831_cuf0|organism=Branchiostoma lanceolatum|type=CDS|length=1347bp|location=Sequence derived from alignment at Sc0000143:148..3023+ (Branchiostoma lanceolatum)
ATGGATCAGCGGACCTGTGGGCACAAGCCATCCCCGAGGAGCAAGTTGAC
AGGACATAAGATAAAGCATACAGGAGAAAAACCTTACAAATGTGACCAGT
GTGACTATTCTACAGCACATAAAAGCCTCTTAAACCAACACAAATTCAGA
CACACCGGTGAAAAACCCTACGTGTGTGAGGAGTGTGGATTTAGAACAGT
TGATCCCTCTAATCTGACCAAGCATAGGAGAAAACATACAGGTGAGAAAC
CATATAAATGTGACCAATGTGACTATGCTGCTGCACAGAAGCCTCATTTA
CGCCAGCACGTCATGTTGAAACACAGCGACAAGAAACTCTACCTGTGTGG
GGAGTGTGGGTACAGGGCTGCTATAAAGGTGTGCCTGACCAGGCACATGA
GAAAACATACAGGTGAAAAACCGTACACTTGTGACCAGTGTGACTACTCA
GCTTCAGAAAAAAACTGTATAGACCAACATATTAGGATAAAGCATACAGG
TGAAAAACCCTACATGTGTGGGGAGTGTGGATACAGGACGGCAGTTAGAA
GTGCCTTATCCAAACATGCTAGAACGCATACTGGCGAGAAACCGTACAAA
TGTGACCAGTGCGACTATTCTGCAACACAGAAATGCAGCGTCGACCGACA
CTTCCTTGCAAAACACATCGGTGAGAAACCTTTAATGTGTGGAGAGTGTG
GGTTCAGAACGGCAGTTCCAGCTGCCCTTGTCGTACATATGAAAAAACAT
ACTGATGACAAGCAATACATGTGTGAGGAGTGTGGATACAAGACAGTCGA
TAAGTCTACCATGTCCAAACACATGAGAAAACATACAGGTGAAAAACCCT
TTACGTGTGGGGAGTGCGGATACAAGACAGCGGACAGATCAGCTCTATAC
CGACATTTGAGAAAACACACCGGTGAGAAACCCTACAAATGTGACTACTG
TGACTATTCAGCTGCACAGAAAAGTGACTCTGACCGCCACGTCATGGTAC
ACCACACCGGTGAAAAGCCTTACATGTGCGCGGAGTGTGGATACAGGACA
GCTGACAGGTCTTCTCTATTCCGACATATGACTACGCACACAGGAAAAAG
ACCCTACAAATGCAACCAGTGTAAATATTCTTCTACTCAGAAACGAGATC
TTGACCGACACGTCATGACAAAACACACCGGTGAGAGACCCTACATGTGT
GTTATATGTGGATACAGGGCGGCTATTAGGTCTGACCTATCACAACATAT
GAGAACACATGACAAACCCTTCAAGTGTGATCAGTGCGACTATTCTACAA
CACGAAAACATAGGTTTAAAGAACACATGGTTAAACACACTGGTTAG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000143 | genome | Sc0000143:148..3023 + |
Properties
| Property Name | Value |
|---|
| Transcript id | BL85831_cuf0 |
| Biotype | protein_coding |
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