transcript:BL85812_cuf0 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL85812_cuf0
Unique Nametranscript:BL85812_cuf0
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



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Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL85812_cuf0

>transcript:BL85812_cuf0-protein ID=transcript:BL85812_cuf0-protein|Name=transcript:BL85812_cuf0|organism=Branchiostoma lanceolatum|type=polypeptide|length=105bp
MGQLRAVSQLPGRFEFQITMEASKRWWTERVRRNFRAIWEFEIMETQLDA
ILACLESKDEFVGIATGKGKSLCYQIAFRCVCRETKLVSIVSPLRALISD
QVRTL
Run BLAST on NCBI

mRNA from alignment at Sc0000015:1329598..1330534+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL85812_cuf0 ID=transcript:BL85812_cuf0|Name=transcript:BL85812_cuf0|organism=Branchiostoma lanceolatum|type=mRNA|length=937bp|location=Sequence derived from alignment at Sc0000015:1329598..1330534+ (Branchiostoma lanceolatum)
AGTCAGCCAGAGAGGGTTCATCAGCCCGGCAGGGATCTGCCCTTAGTCGG
ACCTGAACAAGGTTATTAACACGCAATTGTTACCTAATCTCCCCGCAGTC
AAACTGCGCTTAGAAAGAAGGTGCGAATTGTGCCGGCGTTCGAAGCCCGG
CGCCCGTCATGGGTCAGCTGCGCGCTGTCTCACAGTTACCCGGCAGGTTT
GAATTCCAGATAACAATGGAAGCAAGCAAGCGCTGGTGGACGGAAAGAGT
CCGCCGTAATTTCCGTGCTATCTGGGAGTTTGAAATTATGGAGACTCAAC
TTGATGCCATTCTAGCATGTCTGGAGAGTAAAGATGAATTTGTTGGGATT
GCGACGGGCAAGGGGAAATCCCTGTGCTACCAAATTGCATTCCGCTGTGT
CTGCCGTGAAACAAAACTTGTTTCGATCGTCTCACCGTTACGAGCGCTAA
TCAGCGACCAAGTAAGGACGTTGTAGAGACTTCTCGATCCACCGGACGAC
GCCATGGCTTCTGCCATAACTCAAGACATGACAAACGACAAGACTCGGGT
TTTACTGAACTGAATATAGACGCGAGAATCTGACTCTCAAAAAGATACAA
AGACACTGAAAGATGGCGGTGTTTCGGCGTGGTTTTGCACCGCATCCAAG
CGTGAAAGAATGGCCAAAAACAGATTCCAAGTTGTGGTTATAAAAAGACA
CACCAAGCATTCACATAAATAAAACGACATTTTAATTAATTATGGTTTAA
CATTAAGCTAGAAACTAATGGTGCAAATTTGTCTAACGGAAAAGTCTGTA
TGTCGATAGCTTTGCTTTGATGCGTTGTGATGCGGTGTGTTCCCGCACTA
TTGTATCTGAGGGGAAACACTCCTGCTGTGAAATGGCGCGGCCGGCCGGG
TTCGTCCCAGATTCGGGGTTGTAAAACGATAATCCCT

Coding sequence (CDS) from alignment at Sc0000015:1329598..1330534+

>transcript:BL85812_cuf0 ID=transcript:BL85812_cuf0|Name=transcript:BL85812_cuf0|organism=Branchiostoma lanceolatum|type=CDS|length=318bp|location=Sequence derived from alignment at Sc0000015:1329598..1330534+ (Branchiostoma lanceolatum)
ATGGGTCAGCTGCGCGCTGTCTCACAGTTACCCGGCAGGTTTGAATTCCA
GATAACAATGGAAGCAAGCAAGCGCTGGTGGACGGAAAGAGTCCGCCGTA
ATTTCCGTGCTATCTGGGAGTTTGAAATTATGGAGACTCAACTTGATGCC
ATTCTAGCATGTCTGGAGAGTAAAGATGAATTTGTTGGGATTGCGACGGG
CAAGGGGAAATCCCTGTGCTACCAAATTGCATTCCGCTGTGTCTGCCGTG
AAACAAAACTTGTTTCGATCGTCTCACCGTTACGAGCGCTAATCAGCGAC
CAAGTAAGGACGTTGTAG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL85812gene:BL85812Branchiostoma lanceolatumgene
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL85812_cuf0-E1BL85812_cuf0-E1-1564476830-124844Branchiostoma lanceolatumexon
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL85812_cuf0transcript:BL85812_cuf0-proteinBranchiostoma lanceolatumpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000015genomeSc0000015:1329598..1330534 +
Properties
Property NameValue
Transcript idBL85812_cuf0
Biotypeprotein_coding