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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL85765_cuf2 >transcript:BL85765_cuf2-protein ID=transcript:BL85765_cuf2-protein|Name=transcript:BL85765_cuf2|organism=Branchiostoma lanceolatum|type=polypeptide|length=189bp
MQKKAEKNETVWDMILSCLQVKNKDYVGQACSKQGISSSVLEGHTSLPTT
PVLNLQADPHGARKSYMLARDGPVSQRSSSQPRSWLELLLLTGPSLASIY
DFRAPCGSAWRLSTGSTWENVARWFHNLGQGEVKPEALRWSLEALLKSTA
GKEEVFHTQGTCLQGCRAPVGGDIQLSTGDANNTCTQPI Run BLAST on NCBI mRNA from alignment at Sc0000190:532781..536477+ Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL85765_cuf2 ID=transcript:BL85765_cuf2|Name=transcript:BL85765_cuf2|organism=Branchiostoma lanceolatum|type=mRNA|length=3697bp|location=Sequence derived from alignment at Sc0000190:532781..536477+ (Branchiostoma lanceolatum)
GTCATATTCTCCTTAAAATGCAACATTTCCATTTCAAATTTCGTGTGAAT
GTTGACAAATAGGTTGTTTCCTGAAATATATCACAGATTTTCACTTACAG
CAATACATCATGGAGTTTTTGACATGTTTCACGGGCCAATACCTTGTCTG
AGCGCCGGAGCGGGGGCGCGCGGCAAATCTGCTGTCACCGACTCGTGAGC
TATGTTTTTGAAGGCCGTGCCAGCACATGTGCCGCGACCTCAATGCACTG
ATACGTCTCAAATAAAGTAGCAGAACATTTGTGCCTGCAGATTACCATAC
CTTTGGAGCGGGAATAACTCATTTTTTGCCGAAAAATGAAAAGATTTAGT
TTTTAAGAACATATTAAAAAATGAAAACGGTAAATTATTGAAACCAAAGT
ATATCTAGTGTGTAGTGTGTTCATTTTACTTCCCAATAAAATAATTGTTT
CAGAGATTTACTGTTTGGCACACCCCCTCTTTTTCGATTGAAGTGGGTAA
CTCCACAGAGTTTTTCAATATGGCTGCCGTCCGGGAGAGCACATGGTGCC
AATTAGACATACGATCTCTTGTGGAGAAGGAAGCGATTCCCGGTAGGTTT
CTGCATCAAAACATTTCACCTACATTACTAGGAGTCAATAGACATGAGGT
TAACACGCAACATTAAATCTAATTAAAAAAGAATTGCTCTATATTTATAG
ATATGTCGGGGCGCCAAGGTAAGGGTGGGAGGGGGGCTAAAAATTACTTT
GTTTCCATTGGCCCCATGTTTCCTACAACTTCGTAACATAAATATTAAAC
ACCCACTGGTAGGCAGATCAGTTGGGAACATACAATGTTTCATATAGTTT
CTCTTTTACCTTATTTTTAGGTGAATAAATATACATTGCTACAGTAAAGA
GGAATGGGCCTTTGAGTTTGATGAGTGATAATCTGACAGATCATTGTTGC
CTCCACTCATTACAGACGGCCTGGAGTTTTCAAGTTTGAATGTCCGTCTT
GTGAGGGATATAGTCAACTGTATTGAAAACTCACAATTCCCATTGACAAG
AAAGCTGCCAGCTCTGCTGTCTTAAATTGTATCAACCCAAGAGTTAGCAG
CTGACAAGTAAACAAGTCAAGCGCCAGATGCTGTCATATGCAAAAAAAGC
AGAAAAGAATGAAACTGTCTGGGATATGATCCTCTCCTGCCTTCAAGTGA
AGAACAAGGACTATGTCGGACAGGCCTGCAGCAAACAGGGCATTAGCAGC
AGTGTTCTAGAGGGCCACACAAGTCTCCCCACAACCCCTGTACTTAATCT
CCAAGCAGATCCACACGGGGCGCGAAAATCGTATATGCTTGCCAGAGATG
GTCCAGTCAGCCAGAGAAGCTCCAGCCAGCCCCGTAGCTGGCTGGAGCTT
CTCTTGCTGACTGGACCTTCTCTGGCTAGCATATACGATTTTCNATATCA
ACCCAAGAGTTAGCAGCTGACAAGTAAACAAGTCAAGCGCCAGATGCTGT
CATATGCAAAAAAAAGCAGAAAAGAATGAAACTGTCTGGGATATGATCCT
CTCCTGCCTTCAAGTGAAGAACAAGGACTATGTCGGACAGGCCTGCAGCA
AACAGGGCATTAGCAGCAGTGTTCTAGAGGGCCACACAAGTCTCCCCACA
ACCCCTGTACTTAATCTCCAAGCAGATCCACACGGGGCGCGAAAATCGTA
TATGCTTGCCAGAGATGGTCCAGTCAGCCAGAGAAGCTCCAGCCAGCCCC
GTAGCTGGCTGGAGCTTCTCTTGCTGACTGGACCTTCTCTGGCTAGCATA
TACGATTTTCGCGCCCCGTGTGGATCTGCTTGGAGATTATCAACAGGCAG
CACATGGGAAAATGTGGCAAGATGGTTTCACAACTTAGGGCAAGGGGAAG
TGAAGCCAGAAGCACTCAGGTGGTCTCTGGAAGCCCTACATTACTGAAGA
GCACNGTTCTACAGGGCCACACAAGTCTCCCCACAACCCCTGTACTTAAT
CTCCAAGCAGATCCACACGGGGCGCGAAAATCGTATATGCTAGCCAGAGA
AGGTCCAGTCAGCCAGAGAAGCTCCAGCCAGCCCTGTGTGGATCTGCTTG
GAGATTATCAACAGGCAGCACATGGGAAAATGTGGCAAGATGGTTTCACA
ACTTAAGGCAAGGGGAAGTGAAGCCAGAAGCACTCAGGTGGTCTCTGGAA
GCCCTACATGACTGAAGAGCACAGCTGGGAAAGAAGAAGTTTTTCATACA
CAAGGGACATGTCTACAGGGATGTAGAGCACCTGTTGGAGGAGACATACA
GCTGTCCACAGGAGATGCAAACAACACATGTACACAGCCCATCTAAAAAA
GCTCTGAAGAAAATACTGCGAAAGACAGAATCAGAGAAGCCAAGCTTGCA
GAAGAAAGAGAACTTTCGCATACTGTAAAACAAGCCATTTGGGAACANGA
ATCAGTGAAGCCAAGCTTGCAGAAGAAAGAGAACTTTCGCATACTGTAAA
ACAAGCCATTTGGGAACATGTTGTGCAGCTCAGTACAGAAATACAGGACC
TTTGTGCCAACTTGCAGGAGGCTATCCTAGACTGTAGCCAGCAGGATCAA
CACATTAGATCTTTAGTAGCAGAGCTTGAGAAAACAAAAGGAGACAGGCC
GGAAGATCACAAGAACCTACTCTGCCTACAAAACAAGATGAAGGATGCTC
TTGAAAAGGAGGAGGAAACAAGGAAATCAAGGACAGAGTTAAGTCATCAT
TTGAAGAAAACCACGAAAGAACTCTCCAAGAAAGACAGGGATATTGAGAA
AGAAAGAGAGAACAGAGCGAGGAAAGAAAGCCAGGAGGATGCAGCATTGG
CAGTACTTGAGAGAGAGTCCCTTTGCTGTACATTGTATGGAGTGCGTGCA
CAGTGCAAATAGAATGTTTTCTATTGTTTTACTTTTTGTCCCTTAGCTGT
GCATTGTGTAAAGTGTGTGTACAGTGTACATAGAATTGCAAACTATACAT
TTTGAGATGCAGTTTCTGAATAAGACACAAACCACAATTAAATCAAGGTG
TGAACCTTTGTCTTTTATTCATCTATATGTAGAAAGCTGTAAGTACATAC
AAATGTAGACCTTCAAATTAGTTGTTCTCGATTTCATCATACAGATCCAA
AATGGTGTTTTTATGGCAGTTGACCTTTAAACCCATAATTTTCAAAATAA
TATAAAATAGTGCAAAGGATATGAAATGAATATCAATGTGTTGTTCTAAT
TCAAAACCTATCTGGTTTCATTATATTTTGGTAAGAAAGGGAGCAATGGA
ACTTAATCAAAAGTGAAGGGAGACAACAGTGCAAAAATTTCCCAGTAATG
CTGATATACTCAATTAGCAATTTTTATGTCTAATAAACAAATCTGATGTT
TATATTTAGGAAAAAGATTGATTGTAAATTGATTGTTAGGTCATTTATGA
TCTATAGACAACAATTTAAGTTTACCCTGATGACCCAGGGCTTAAGTTTG
CAACATGTTGTTGATACAAAATTTTTCTACAAAAATACCTCAAAAACAAT
ATTTAAAAAATTTATAACCCTTGAAGGGAACATGATAGAAACAAAATTTA
AACTGTTTTGTGATCCCTGTAACAGGCTCTATTTACCTACAAAATTTCAA
AGGAAAATATTGAGGTTGAAATTTTGACCTGTCCCACCTACTATTAG Coding sequence (CDS) from alignment at Sc0000190:532781..536477+ >transcript:BL85765_cuf2 ID=transcript:BL85765_cuf2|Name=transcript:BL85765_cuf2|organism=Branchiostoma lanceolatum|type=CDS|length=1140bp|location=Sequence derived from alignment at Sc0000190:532781..536477+ (Branchiostoma lanceolatum)
ATGCAAAAAAAAGCAGAAAAGAATGAAACTGTCTGGGATATGATCCTCTC
CTGCCTTCAAGTGAAGAACAAGGACTATGTCGGACAGGCCTGCAGCAAAC
AGGGCATTAGCAGCAGTGTTCTAGAGGGCCACACAAGTCTCCCCACAACC
CCTGTACTTAATCTCCAAGCAGATCCACACGGGGCGCGAAAATCGTATAT
GCTTGCCAGAGATGGTCCAGTCAGCCAGAGAAGCTCCAGCCAGCCCCGTA
GCTGGCTGGAGCTTCTCTTGCTGACTGGACCTTCTCTGGCTAGCATATAC
GATTTTCGCGCCCCGTGTGGATCTGCTTGGAGATTATCAACAGGCAGCAC
ATGGGAAAATGTGGCAAGATGGTTTCACAACTTAGGGCAAGGGGAAGTGA
AGCCAGAAGCACTCAGGTGGTCTCTGGAAGCCCTACTGAAGAGCACAGCT
GGGAAAGAAGAAGTTTTTCATACACAAGGGACATGTCTACAGGGATGTAG
AGCACCTGTTGGAGGAGACATACAGCTGTCCACAGGAGATGCAAACAACA
CATGTACACAGCCCATCTAAATGCAAAAAAAAGCAGAAAAGAATGAAACT
GTCTGGGATATGATCCTCTCCTGCCTTCAAGTGAAGAACAAGGACTATGT
CGGACAGGCCTGCAGCAAACAGGGCATTAGCAGCAGTGTTCTAGAGGGCC
ACACAAGTCTCCCCACAACCCCTGTACTTAATCTCCAAGCAGATCCACAC
GGGGCGCGAAAATCGTATATGCTTGCCAGAGATGGTCCAGTCAGCCAGAG
AAGCTCCAGCCAGCCCCGTAGCTGGCTGGAGCTTCTCTTGCTGACTGGAC
CTTCTCTGGCTAGCATATACGATTTTCGCGCCCCGTGTGGATCTGCTTGG
AGATTATCAACAGGCAGCACATGGGAAAATGTGGCAAGATGGTTTCACAA
CTTAGGGCAAGGGGAAGTGAAGCCAGAAGCACTCAGGTGGTCTCTGGAAG
CCCTACTGAAGAGCACAGCTGGGAAAGAAGAAGTTTTTCATACACAAGGG
ACATGTCTACAGGGATGTAGAGCACCTGTTGGAGGAGACATACAGCTGTC
CACAGGAGATGCAAACAACACATGTACACAGCCCATCTAA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000190 | genome | Sc0000190:532781..536477 + |
Properties
| Property Name | Value |
|---|
| Transcript id | BL85765_cuf2 |
| Biotype | protein_coding |
|
