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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL85746_cuf0 >transcript:BL85746_cuf0-protein ID=transcript:BL85746_cuf0-protein|Name=transcript:BL85746_cuf0|organism=Branchiostoma lanceolatum|type=polypeptide|length=580bp
MRLSVFTFIASGKSLSRWLNVTWASKSSSGSLPISWTGTPMLCSVSHNLN
SVSLVCWQHCANFNLFVNDLPATLTSPLCDPITLKDTPISSLLWADDLVL
VSQSEAGLKQCLERLDTFCSTSKLSINRGKTKVMIFSKTGRASNNKRSPF
QSQGQTINFSNCYTYLGVDITPSGSFHRANRQLRVKALRASFKLKSLLAS
NHNPSISLALDLFNSLVKPILLYCGEILGTNAKGKELIFKGIKEYPNENI
REQIYNILSPILGTDVNTSILRATRVGKKTDISTIRPVLVRFRKYTDKLN
VVYQSNVLRNQNVALEQPAVSYEIPDLEHVLINYCKILLRVPRSSVNAAV
IGELGMFPLYIDTQTRLIKYWLRLNNMSNERIAKKAYDTAVIQEHDWSTH
VQDILSRHGFQNIWLNPNVNANYFGNMFKERLKDTFLSNWRQKIRSFSKL
GTYSKIKTTFALENYLLAVQNKSFTNSITRLRIGAHCLEIEKGRHKNIPA
EKRMCPSCKENIEDEYHFLMICPSYNEERKRLMITCKKEITLPGTSREIF
NVLLSCPDSVSVYLGQFIYNAMQKRSRAIT Run BLAST on NCBI mRNA from alignment at Sc0000580:76538..80648- Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL85746_cuf0 ID=transcript:BL85746_cuf0|Name=transcript:BL85746_cuf0|organism=Branchiostoma lanceolatum|type=mRNA|length=4111bp|location=Sequence derived from alignment at Sc0000580:76538..80648- (Branchiostoma lanceolatum)
AGATGGTCCATTTTGAGCGAGAGAGAGGCCTTCACAAGGCGAAAATCCGC
CATTTTGAAAAATGGCCGTTGCCATGGCAACTGGTAACCTCCGACCCAAA
ACTTTCCCATTTTTGTAGGTTTGGGCCAAGACCCTACCACCACACAAAAT
CTAAGAAAATTTCATTTTTTGACTTTGGCCACCTTATGCTTGGTTTTTAC
AGACAGCTGCTCTTAAGTTTCAATGTATGGACATTCTAATATTAATATAT
CATGCAAGAAGTACTGTTTTCGATGCCATTAGTGTACGTTAAGATGTTCA
GAATCAAAGAAAAAAACTAGAACTTAACTGAGCTGAAACATAACCTGCCA
TCAGGTGCGTAAAGTAAAAGCGTTTGAAATCTGTAACGGATAGGATCTAG
AACGGAATGCTACACATTTGTAAGCAGTTTTGCAAAGTGTGCATTATCAT
TTTGTACTCTGTAAGCCTCGACAGCAGATTTTGTTCGTTGACTTCTGCTT
GTCATACGCCTGAGGAAGAACTGCATTCATCGTTCAAATGGCAGCATCCA
ATACCCTGTCACTGGGCCAAGTTTTTCGGTTGTCTTGGTCCGGTCAAACA
TTAATGTCTGCAAAAGATTACTTGAAACAATGAAGATAAATCTAGAGGCT
AACCACGTCAAAGTGCAAATCAAATTTTACAGCATACTTGCAAATATAGA
ACAATGTGTAGCACCTGATAGCTTGAGATGGCTGAATGTGTATTGGGGCT
GTCTGGTGGGTTGGGATGATTTTTTTTTTAATTTAACATACTGATGCCGC
CAAATCTTCCCGATCAGGGATTCCCGTGTCTAGAGGGACATGAAGGCCGG
TGCTATCTTGGGAGACAGGGGCAATAGAGGGGGGAGGGGACCTCAGAGCG
CTGTACTGGTGTGGACTTATCACTATTGTTACCTCAGCCAAGTATGGATA
ACGCCATTGTCACCGCCGGAGTAAGTATCAAGGCGGTTTTTAGAAATAAT
TGTAATTCAGGAAACAGTGTATTCTGTTATTTGCTTTCTCGCATTGTTTT
GAGACTTTTACATGTTTATTTATGCGCTTAAGTGTATTTACCTTCATAGC
AAGCGGGAAATCCCTTTCCAGATGGCTGAATGTCACATGGGCATCCAAGT
CCAGCTCTGGAAGCTTACCCATATCTTGGACAGGGACCCCAATGCTCTGT
AGTGTCTCGCACAACTTGAATAGTGTTTCCCTGGTCTGTTGGCAACATTG
CGCTAATTTTAATCTATTTGTAAATGACCTTCCAGCTACATTAACATCAC
CATTATGCGACCCTATAACCTTAAAAGATACTCCCATAAGTAGTCTCCTC
TGGGCAGATGACCTTGTGCTCGTTTCACAATCAGAAGCAGGTCTGAAACA
ATGTCTAGAAAGACTAGATACATTTTGTTCCACTTCGAAACTATCTATTA
ATAGAGGAAAAACCAAAGTAATGATATTTTCCAAAACTGGGCGAGCTAGT
AACAATAAACGCTCTCCCTTTCAATCACAAGGACAAACTATAAACTTCTC
AAACTGTTACACATACTTAGGAGTAGACATCACACCATCAGGATCATTCC
ATCGTGCCAATAGACAACTTAGAGTTAAAGCACTGCGGGCCTCTTTTAAA
CTTAAATCATTGCTGGCATCAAATCATAATCCGTCAATTTCTCTCGCTCT
AGATTTATTCAATAGTCTCGTCAAGCCGATTTTGCTCTATTGCGGGGAAA
TACTGGGAACAAACGCTAAAGGAAAAGAGCTCATCTTCAAAGGAATAAAG
GAATATCCGAATGAAAATATTAGAGAACAAATATATAACATCCTTTCCCC
GATACTGGGAACAGATGTGAATACTAGCATACTAAGGGCTACCCGTGTTG
GAAAGAAAACTGATATATCAACTATCCGTCCTGTTCTTGTTCGATTTAGG
AAATATACTGATAAGCTGAATGTTGTATATCAATCAAACGTATTGAGAAA
TCAAAATGTAGCATTAGAACAACCTGCTGTTTCTTATGAGATTCCCGATT
TAGAACATGTATTGATTAACTACTGTAAGATATTGCTTCGTGTTCCTAGA
AGTTCTGTTAATGCTGCTGTAATAGGAGAGTTAGGTATGTTTCCACTGTA
TATAGATACTCAAACACGACTGATTAAATATTGGCTAAGATTAAATAATA
TGTCTAACGAAAGAATTGCTAAAAAAGCATACGACACTGCTGTTATACAA
GAACACGACTGGAGTACCCATGTACAAGATATACTGTCAAGACACGGTTT
CCAAAATATTTGGCTAAACCCTAATGTCAACGCCAACTATTTTGGTAACA
TGTTCAAGGAACGTCTGAAGGACACATTTCTTTCCAACTGGAGACAAAAG
ATTAGGAGTTTTAGTAAACTTGGAACATATTCGAAAATTAAGACAACCTT
CGCTCTGGAGAATTATCTTTTGGCAGTTCAAAACAAATCCTTTACAAATA
GCATAACAAGGCTGAGAATTGGTGCGCATTGCTTAGAAATTGAAAAGGGT
CGTCACAAAAATATACCAGCCGAAAAGAGAATGTGTCCCTCCTGCAAAGA
AAATATTGAAGATGAATACCATTTCCTTATGATATGTCCATCTTATAATG
AAGAAAGGAAAAGACTGATGATTACATGTAAGAAGGAAATAACACTACCT
GGAACAAGTAGAGAAATATTTAATGTACTTCTGTCATGTCCTGACTCTGT
ATCTGTCTACCTAGGCCAATTCATATATAATGCTATGCAAAAGAGAAGCC
GTGCCATAACGTGAAATATATCACGCCATTATCTTATGTATCGAGTAATG
ATGTTAGGTTAGTGCACTAGTATAGATAGTCCGTAGTTGTTAATATTCCA
TGTTATTTGCCGTACATTGTACCTGATGCAATTGTTGTGCAATAAACTTG
ACTTGACTATTTTGCCAGATAACCAGTGAAGAGCTGTAAAACAGCAAAAT
AACAGGAACGCACATAGCATCTGAATTTTGAACCCACGTAACACATTTTC
TGCTGTTATAAGTTAGTAGCTATCACACAACTACATTACTTACCTCTCTG
CTCCCACAGGAAACCGTGATAAGAGAGATGTACGTCTTATATGATAAGGA
CGTATTATTAGCAGTCGTACTATTGTCAGCAACATACAGTCATATCTAAT
AATGCCCTACACGATCATTCCAAGACAAAAAACTGAAGCACGATAGTACT
GGAATCATATTTTTGTATGTACCCTTAGCGCTTGAGAAATACAATATATT
CACAACACCAGTAGTTTTAACACTGAAGTAGTTTAGTTTATGGTATTGTT
GTGTGCCATCCCTTATCGTTTCGCCAGGTAGCAATAGACATGCATATGGA
CGTGCCTAGTGTCAAGCTTGTCCAGCGTCTCATGTAGAATCTTTTGTAGA
GCGATCCTGGTGTGGTTTCCACCGAGGATCTCGTATTTATAACTGTTTTT
ATTGGTCTCATCGTACAGGCCAGCAGTTATGTCAGGGATATTCCCGATAA
TGATGGTTGTCGCCTGACCAGATGTATTTTTTTAGCTTGGAACACAACCA
TTTATTTCTTAAACCTTAGTTATAACCAAAGATGTAAGTGATGTTAACAT
ACTGTAGGTTGAATATAATTATTGATAATAGACTGTCTTATAAAAGCAAC
ATACAAACTTATACATAAACACGAAGGCAGGACAAACTTAAGACGGTTTT
AACAATTTGTTTTCCCCAAACGTGTATTAACACTGTTAAACGTTTGCCCT
ACCCAGTGAAATAATACTAGCAGAGGAATTTATATCTATACTTTTTGGTC
TTTTTGTACTGCTCTTACTAGTTTAAACATGGAAGTTTACATAGCACTGA
AATACGTGGGTAAATTATCAACACAGCAAGTATCAACCTTATACACAGGA
AACACGCAGTTATATATTGGCTGACAATTGATTAAAACTTAGCATCCAGT
AGAGCCACTAAGATCGACATTCAGTCATATTTATATTTCCTGATGCCATA
AAGCTGACAACCCGGACTGGAACTGATCAAGCTCAAGCCGTTCCAGCCGG
GGCACCACCAG Coding sequence (CDS) from alignment at Sc0000580:76538..80648- >transcript:BL85746_cuf0 ID=transcript:BL85746_cuf0|Name=transcript:BL85746_cuf0|organism=Branchiostoma lanceolatum|type=CDS|length=1743bp|location=Sequence derived from alignment at Sc0000580:76538..80648- (Branchiostoma lanceolatum)
ATGCGCTTAAGTGTATTTACCTTCATAGCAAGCGGGAAATCCCTTTCCAG
ATGGCTGAATGTCACATGGGCATCCAAGTCCAGCTCTGGAAGCTTACCCA
TATCTTGGACAGGGACCCCAATGCTCTGTAGTGTCTCGCACAACTTGAAT
AGTGTTTCCCTGGTCTGTTGGCAACATTGCGCTAATTTTAATCTATTTGT
AAATGACCTTCCAGCTACATTAACATCACCATTATGCGACCCTATAACCT
TAAAAGATACTCCCATAAGTAGTCTCCTCTGGGCAGATGACCTTGTGCTC
GTTTCACAATCAGAAGCAGGTCTGAAACAATGTCTAGAAAGACTAGATAC
ATTTTGTTCCACTTCGAAACTATCTATTAATAGAGGAAAAACCAAAGTAA
TGATATTTTCCAAAACTGGGCGAGCTAGTAACAATAAACGCTCTCCCTTT
CAATCACAAGGACAAACTATAAACTTCTCAAACTGTTACACATACTTAGG
AGTAGACATCACACCATCAGGATCATTCCATCGTGCCAATAGACAACTTA
GAGTTAAAGCACTGCGGGCCTCTTTTAAACTTAAATCATTGCTGGCATCA
AATCATAATCCGTCAATTTCTCTCGCTCTAGATTTATTCAATAGTCTCGT
CAAGCCGATTTTGCTCTATTGCGGGGAAATACTGGGAACAAACGCTAAAG
GAAAAGAGCTCATCTTCAAAGGAATAAAGGAATATCCGAATGAAAATATT
AGAGAACAAATATATAACATCCTTTCCCCGATACTGGGAACAGATGTGAA
TACTAGCATACTAAGGGCTACCCGTGTTGGAAAGAAAACTGATATATCAA
CTATCCGTCCTGTTCTTGTTCGATTTAGGAAATATACTGATAAGCTGAAT
GTTGTATATCAATCAAACGTATTGAGAAATCAAAATGTAGCATTAGAACA
ACCTGCTGTTTCTTATGAGATTCCCGATTTAGAACATGTATTGATTAACT
ACTGTAAGATATTGCTTCGTGTTCCTAGAAGTTCTGTTAATGCTGCTGTA
ATAGGAGAGTTAGGTATGTTTCCACTGTATATAGATACTCAAACACGACT
GATTAAATATTGGCTAAGATTAAATAATATGTCTAACGAAAGAATTGCTA
AAAAAGCATACGACACTGCTGTTATACAAGAACACGACTGGAGTACCCAT
GTACAAGATATACTGTCAAGACACGGTTTCCAAAATATTTGGCTAAACCC
TAATGTCAACGCCAACTATTTTGGTAACATGTTCAAGGAACGTCTGAAGG
ACACATTTCTTTCCAACTGGAGACAAAAGATTAGGAGTTTTAGTAAACTT
GGAACATATTCGAAAATTAAGACAACCTTCGCTCTGGAGAATTATCTTTT
GGCAGTTCAAAACAAATCCTTTACAAATAGCATAACAAGGCTGAGAATTG
GTGCGCATTGCTTAGAAATTGAAAAGGGTCGTCACAAAAATATACCAGCC
GAAAAGAGAATGTGTCCCTCCTGCAAAGAAAATATTGAAGATGAATACCA
TTTCCTTATGATATGTCCATCTTATAATGAAGAAAGGAAAAGACTGATGA
TTACATGTAAGAAGGAAATAACACTACCTGGAACAAGTAGAGAAATATTT
AATGTACTTCTGTCATGTCCTGACTCTGTATCTGTCTACCTAGGCCAATT
CATATATAATGCTATGCAAAAGAGAAGCCGTGCCATAACGTGA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000580 | genome | Sc0000580:76538..80648 - |
Properties
| Property Name | Value |
|---|
| Transcript id | BL85746_cuf0 |
| Biotype | protein_coding |
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