transcript:BL85741_cuf0 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL85741_cuf0
Unique Nametranscript:BL85741_cuf0
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



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Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL85741_cuf0

>transcript:BL85741_cuf0-protein ID=transcript:BL85741_cuf0-protein|Name=transcript:BL85741_cuf0|organism=Branchiostoma lanceolatum|type=polypeptide|length=184bp
IPNYTSLHRCRSNRVGGGVSLFIRENLEFIPRDDLTIHTEEENVESLFIE
LPTSSSPSAKKVILGCVYRPPDTDIKEFISHLATTLDAINKEGKTCFLVG
DFNIDLLKNETHELTADFLNMLFSCSIYPTISKPTRITDKSATLIDNIFT
NSLTESYTSGVLVTDISDHFPTFYIVRSNSRMNK
Run BLAST on NCBI

mRNA from alignment at Sc0000160:52674..53229-

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL85741_cuf0 ID=transcript:BL85741_cuf0|Name=transcript:BL85741_cuf0|organism=Branchiostoma lanceolatum|type=mRNA|length=556bp|location=Sequence derived from alignment at Sc0000160:52674..53229- (Branchiostoma lanceolatum)
ACATTCCAAACTATACATCATTACATCGTTGTAGATCAAACAGAGTTGGT
GGGGGAGTATCTCTCTTTATACGTGAAAATCTAGAGTTCATTCCAAGGGA
CGATCTAACTATACATACAGAAGAGGAAAATGTAGAATCTCTTTTTATAG
AACTTCCTACTTCCTCATCTCCTTCTGCAAAAAAAGTGATATTAGGCTGT
GTATACCGGCCGCCTGACACTGATATTAAAGAATTTATTAGTCATCTTGC
AACAACATTGGATGCAATAAATAAGGAAGGGAAAACATGTTTCCTTGTTG
GCGATTTCAATATAGATTTACTAAAAAATGAAACCCATGAGCTAACTGCT
GATTTTCTAAATATGTTGTTCTCGTGCAGTATTTATCCAACCATTTCGAA
ACCAACAAGAATAACTGATAAATCAGCTACATTAATTGACAATATCTTCA
CAAATTCATTAACAGAATCATACACATCAGGTGTGCTTGTAACAGATATT
TCAGACCATTTCCCTACATTCTACATAGTTAGGAGTAATAGTAGAATGAA
TAAAAG

Coding sequence (CDS) from alignment at Sc0000160:52674..53229-

>transcript:BL85741_cuf0 ID=transcript:BL85741_cuf0|Name=transcript:BL85741_cuf0|organism=Branchiostoma lanceolatum|type=CDS|length=552bp|location=Sequence derived from alignment at Sc0000160:52674..53229- (Branchiostoma lanceolatum)
ATTCCAAACTATACATCATTACATCGTTGTAGATCAAACAGAGTTGGTGG
GGGAGTATCTCTCTTTATACGTGAAAATCTAGAGTTCATTCCAAGGGACG
ATCTAACTATACATACAGAAGAGGAAAATGTAGAATCTCTTTTTATAGAA
CTTCCTACTTCCTCATCTCCTTCTGCAAAAAAAGTGATATTAGGCTGTGT
ATACCGGCCGCCTGACACTGATATTAAAGAATTTATTAGTCATCTTGCAA
CAACATTGGATGCAATAAATAAGGAAGGGAAAACATGTTTCCTTGTTGGC
GATTTCAATATAGATTTACTAAAAAATGAAACCCATGAGCTAACTGCTGA
TTTTCTAAATATGTTGTTCTCGTGCAGTATTTATCCAACCATTTCGAAAC
CAACAAGAATAACTGATAAATCAGCTACATTAATTGACAATATCTTCACA
AATTCATTAACAGAATCATACACATCAGGTGTGCTTGTAACAGATATTTC
AGACCATTTCCCTACATTCTACATAGTTAGGAGTAATAGTAGAATGAATA
AA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL85741gene:BL85741Branchiostoma lanceolatumgene
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL85741_cuf0-E1BL85741_cuf0-E1-1564476830-356494Branchiostoma lanceolatumexon
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL85741_cuf0transcript:BL85741_cuf0-proteinBranchiostoma lanceolatumpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000160genomeSc0000160:52674..53229 -
Properties
Property NameValue
Transcript idBL85741_cuf0
Biotypeprotein_coding