|
|
Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL85500_cuf0 >transcript:BL85500_cuf0-protein ID=transcript:BL85500_cuf0-protein|Name=transcript:BL85500_cuf0|organism=Branchiostoma lanceolatum|type=polypeptide|length=137bp
MRAAMVMWMTLLLVLALSTGSISAQHVLGGYEYWANFNFMTYGGAQRTCE
RSGGRLASFYPGGDLNHDVENYIIRNLVHGYTHFWIGLYKTSNGWRWSDG
TSASTSYNWHSNEPNNVAGNQDRGLWKKLFGTWGFDD Run BLAST on NCBI mRNA from alignment at Sc0000059:555328..559754+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL85500_cuf0 ID=transcript:BL85500_cuf0|Name=transcript:BL85500_cuf0|organism=Branchiostoma lanceolatum|type=mRNA|length=4427bp|location=Sequence derived from alignment at Sc0000059:555328..559754+ (Branchiostoma lanceolatum)
GGGGTAATTAACACCGCCGTAAACAATCCTTCTAATATTCAATGTCACAA
AAAATGACGCCAGTTGCTTCGTTACATGTTAGATGTCTACAACAAAGTGC
CAGCATGGATATACTCTCCAGAAAACAGGTAATATTTGCGACAAACGTAA
TTTTTTTCCTGTAGCGGGGAAAGGGGCCCGGCCGCGCAGGTTTACAGTAT
GAACTTCCAATGACCGCAGGTGACCCCGAATCGAACGCGCATTCGGATTC
GATTACGTCATTTCGAACATCGTGGAACAGCGTTCGAATTCGGCTGGACC
TGGGAGTTTCTGAGCATGAATTTGACCACCGTGATGGTTTAAAAGTTGTA
TCGACCAAACTTCGATCTCATCTGGCTTGGTTTGGTTTGTTGTAGTTGTT
GTGATGAAACTAAAGAATAGAATAGGCTCTTTCATACAGCGTTATTTCAT
TCCCGTTTTTCACGCGTGTGCACCATAAGAGTAGGTGGAGCCAGTATATT
ACCTCCAGTATACGGACACAACTATCACACATACCTAGCTTTGGGGAATT
TTTACTCAATTTAGAGTTATGAAAAAGTGTCAGACATGAAAGGAATTGCA
GGTAGAAGTCTAGCATTGTAATGGTTTTACCTTGAAATGAATTCACAGTG
TTACAGAAGTTTTGAATGGATATTGGTTTCCAAAATTTTTGAGCAAAACT
TCACCTGTGAATTGTAGTATTTTTATGCTAAAACCGATTCGGAAGTAGAA
TAGAATAGCTATCCGAGCTTTTTTTATCACTTCCAAATAGCCCCACAGCT
TTCAAATAGGTTAGAGTTTGGAAATGCTATCCAACAGTTCCAGGCAAAAA
AGGACCCCTTTTTTTACTTTTTATTTTCAGCCGTAGAATGTATTTCACTG
AGAAACGAAATCCCCAAGACAGAAAGTTTAATATATCTGTTATTAACCAG
ACCATTCAAAGCATTAAGATTTTTGGTCACAACAGGTATTTGTTTTTTTT
GTCCACATATCATCCTATTTAAAACAGCCAATTTGGCGTAATTTAAAACG
TTCAGACAAAATTAAGCAACATACGTGCAGTTAGTAGGATTTGGGGTCTA
CACAATACATTTCATTTCGGCGAGACACGTGCGCGAGATTGTTTTTCTGA
CTATCATGATTTTAAGAAGATGTTACAGTTAGTGTCAAGCTCTCCTGGGG
ACAGCGCGGGAGCCCCGGTAACCTGATACCCTCCCGTACAGAGGACATTT
GTTCCTAGCAACCAACCGCTGTGACCATTATGCACATGTTTCTGAAATGT
CTAATCGAAATTGCAGAGCTTATATAAGGCATCTGTTCCGTGGTAGATGC
AAAATCTAACTGCAATGGATACTTTTATTTTGCATTCTAGCGTCCTTAAC
TGTGTATCTGTATTTTCTAGTCATGCAGCTAAATCCATTGACTTCAAAAT
GTGACCTCTTCAAGTTGTGTCGAGGTTGTGTTAATGAATCGCCTACTGTT
GTGGTTTATTGAAGCTCTACTCTAAATACACACTTTGTGTGGCGCTCTAT
GCTAACAATACTGCGATATCTTATTCAACAGACAATCTTACGCAAAGAGG
CTCACCCACACTAATTTTGATAAAGCTATTGTGCAATTCATGTATTTGTA
CAAGAGAGAGTTATGACCCATAGAATTGTTCCTTAATTGCTTTTGCCTTG
ATCTTGGTACACCGGTGTCATGTCTTGGGCGATACCTGCAGCTGTGACAT
CATGATCAAATGCAGCATCTATCTAAATGAAGTACCCAATTTGAAACTGA
GGTTGTATAAGCTATATTTTCCATAGGTTTTCGGGCAAGATGCGGGCAGC
CATGGTGATGTGGATGACGTTGCTACTCGTACTAGCACTCAGCACAGGTA
TGAATTACAAGTTCCATATCCACATACATCTACAATTGCCTTAAGAAGCG
AGAAGAAGTCGAACCTGTAAATAGTAGACAAGTATAGATTAGTCCTATTT
TTATAATTTTTACTTGACTAAAAACCTGGCAGCTTAAGGGTTAAATCAAA
TGACGCGAATTTTGATATGACAATGCATGTGATATATGCCAACATGGCTT
TTTCTTAAATGCGCCATACATCACTATTTTATTTTTGATTTTGAGAAACA
TTTTTCAATCAAAGCTACAAAAAATGTATTTGGGATTGTTGATAATCTTA
GCGGGTCTGAGCAATTTGGGACTGGTTAATTTCACAGGTGGGTGCCATTG
AAAGATTTCAATCTTGCAATTGGACTTTCTTGAATTCAATTTTGGACTGG
GGTGATTATGGCTATGATGAAAAAGACCATTTTTCGAGTAGAATTATGTA
TTATTCAGTATTTTGACATTTATTTAGAGTTTCCTGTTTTCGAGCCTATT
CTTGCATATGGTGTAACATTTGGAAAGCTCGACTTAGGACTTTGATACAT
TTGTAATAATTTACTTATGGACATTTTGAGAAATGTTTTATTTTTGCACG
GTGGTGATTTGGGAACAGTCCATTTTTGTATTGTGAGAAATGTGCTTTAA
TTGCCAAGGCTTCACTTCCAGAGGGAAAATTAGTTTGAAGTACCGAAACT
TTGTTACATTAGCAATATAGAATTTGCAACTCTTGAAGGCACAGCTTTTA
GTTTAAATTTAAAGTGAAGGTAATTTCATAATACCGGCGTCACAGTTCAT
GCGAACGTCGGCCGAAATTTTAGGTCGCCCGACGGTCGCCAAATTTCAAA
ATCGCTCGAGCGTCGACCGTATTTTTCGCCAAAAATCTGCCCCGTCACAA
ATTGGACGGTGCTCGGTCCACGTTTGTCGAACACTACTAATTAAAAATCC
ACCAAGAGATGGTAACGTCTCTTGAAACGGGTCTAACATCGCTCGAATGC
CGCCCAACTACTGGCCTAGTTTTGCCGTAGCTCGGGCGAGTTTAAAAATC
GTCACTGAGGCCTCGCTGAATTTAAGCGTAGCTTCCATGATCCAGGGACA
CGCGAACGTCGCCCGAGCTCCGAAAAATCGCCCGAAACCCGCGCAATCGA
CAAAACGTCGGCCGTACTTCGGATTGGCCATTTTGAACTCGCCGACACGT
CGGACAAGCTGATTTTTTTTTTCTGACGGGGACTTAAGGGGTAAAGATGG
GGGAAGAAGGTGATTGGGGCAAGCAAACTCTTTCTTCAAGACAAAGACAA
CTTTCTTCAGTTTTCAACATTTGCAATTAATTACCTGATATCATGACAAC
ATAGACTGACTAAAAGTATATTGAACTGACTGGCAAACGACCCCATGAAT
GATAATATGTAGATTGAACCAATCCTATTTTATGTCTAGGTAGCATATCT
GCTCAACATGTACTTGGTGGTTATGAATACTGGGCAAACTTCAATTTCAT
GACCTACGGGGGCGCACAAAGGACATGCGAAAGAAGCGGAGGCCGTCTTG
CGTCATTTTACCCTGGAGGTGATCTCAACCATGATGTTGAAAATTACATC
ATACGTAACCTTGTCCACGGATACACTCACTTTTGGATTGGACTCTACAA
GACGGTACATTCTAGTTACTTTTCAGCAACATTAGTAGTAAGAGCATTTT
TAAAGTAGTTTAATGTTTAAAATGTTTAAATGGTTGAAAGTAGAACTAAC
AAATCTAAGATATTACCGTATTAAGATTCTCCCCCGTCTCCCTTGTGTCT
TGATTAAGTGCTCCCATATGAGAAATGAAAATTTGAAAATGAAAGACTTT
GAGCTTGTTGAGGTTAAACGATTCCCCCTGCGGTAGGATTGTAGTCATAG
CCTCACCCCCGACTCGGGAAGGACGGCTATGATGCCACGTATGTAGGATT
GTATTGGAACGTAGGATGAATATACAAATCGATAGTGATATCAGTGATAT
CAGAAGCTCGACCAAAATAAAGTATACGAAACGTAGTCATTGGGCGTCGT
AGGGCATATCATGACTATTTAATACGAAATGCCCCTTGTGTTAAAATGAA
CTTAGAATATATCTAAAACTCCTCGAAAATTTTTGTCATTTTTCTTGCAA
ACTTCGAATTCCCTACGACGCATCCGAATTTTTTTTTTCTGTCACAGACC
TGTTGGATACCAGTTGTTTACAATGGTATGATTCTATTCTATTTTGAACT
TACCACGACCCTAGCATACATGGTATGTTTTGTCTCACGATTAGTGGAAT
AGGTTCCAACAGAAATTTCTTCACTTGCAAATATGTGCCATCATTCTGGT
AATGTTGAATGATATTTTTACGGAAACCTTCATTTCAGAGTAATGGGTGG
CGATGGTCCGACGGTACTTCTGCTTCCACGTCTTACAACTGGCATTCGAA
CGAACCAAACAATGTAGCAGGAAATCAAGATCGCGGCTTATGGAAGAAGC
TTTTTGGCACTTGGGGCTTTGATGATG Coding sequence (CDS) from alignment at Sc0000059:555328..559754+ >transcript:BL85500_cuf0 ID=transcript:BL85500_cuf0|Name=transcript:BL85500_cuf0|organism=Branchiostoma lanceolatum|type=CDS|length=1233bp|location=Sequence derived from alignment at Sc0000059:555328..559754+ (Branchiostoma lanceolatum)
ATGCGGGCAGCCATGGTGATGTGGATGACGTTGCTACTCGTACTAGCACT
CAGCACAGGTAGCATATCTGCTCAACATGTACTTGGTGGTTATGAATACT
GGGCAAACTTCAATTTCATGACCTACGGGGGCGCACAAAGGACATGCGAA
AGAAGCGGAGGCCGTCTTGCGTCATTTTACCCTGGAGGTGATCTCAACCA
TGATGTTGAAAATTACATCATACGTAACCTTGTCCACGGATACACTCACT
TTTGGATTGGACTCTACAAGACGAGTAATGGGTGGCGATGGTCCGACGGT
ACTTCTGCTTCCACGTCTTACAACTGGCATTCGAACGAACCAAACAATGT
AGCAGGAAATCAAGATCGCGGCTTATGGAAGAAGCTTTTTGGCACTTGGG
GCTTTGATGATATGCGGGCAGCCATGGTGATGTGGATGACGTTGCTACTC
GTACTAGCACTCAGCACAGGTAGCATATCTGCTCAACATGTACTTGGTGG
TTATGAATACTGGGCAAACTTCAATTTCATGACCTACGGGGGCGCACAAA
GGACATGCGAAAGAAGCGGAGGCCGTCTTGCGTCATTTTACCCTGGAGGT
GATCTCAACCATGATGTTGAAAATTACATCATACGTAACCTTGTCCACGG
ATACACTCACTTTTGGATTGGACTCTACAAGACGAGTAATGGGTGGCGAT
GGTCCGACGGTACTTCTGCTTCCACGTCTTACAACTGGCATTCGAACGAA
CCAAACAATGTAGCAGGAAATCAAGATCGCGGCTTATGGAAGAAGCTTTT
TGGCACTTGGGGCTTTGATGATATGCGGGCAGCCATGGTGATGTGGATGA
CGTTGCTACTCGTACTAGCACTCAGCACAGGTAGCATATCTGCTCAACAT
GTACTTGGTGGTTATGAATACTGGGCAAACTTCAATTTCATGACCTACGG
GGGCGCACAAAGGACATGCGAAAGAAGCGGAGGCCGTCTTGCGTCATTTT
ACCCTGGAGGTGATCTCAACCATGATGTTGAAAATTACATCATACGTAAC
CTTGTCCACGGATACACTCACTTTTGGATTGGACTCTACAAGACGAGTAA
TGGGTGGCGATGGTCCGACGGTACTTCTGCTTCCACGTCTTACAACTGGC
ATTCGAACGAACCAAACAATGTAGCAGGAAATCAAGATCGCGGCTTATGG
AAGAAGCTTTTTGGCACTTGGGGCTTTGATGAT
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000059 | genome | Sc0000059:555328..559754 + |
Properties
| Property Name | Value |
|---|
| Transcript id | BL85500_cuf0 |
| Biotype | protein_coding |
|
