transcript:BL85345_cuf0 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL85345_cuf0
Unique Nametranscript:BL85345_cuf0
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



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Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL85345_cuf0

>transcript:BL85345_cuf0-protein ID=transcript:BL85345_cuf0-protein|Name=transcript:BL85345_cuf0|organism=Branchiostoma lanceolatum|type=polypeptide|length=208bp
QNYTWLKQTKINKCMYKFFLLSNNLMDTAHNVQLSWLYLFDSPIPWKVVY
TLLTYCTIDPTLRFFQYKILHKFLPTNRLLHIWKLTDDPLCSFCHLEEET
YLHVFWECPNLIAFWNKLKIWYLQKTGQEILLNGFNIIFGNLFPGTPVIQ
NFIILLAKYFIYHSRKSKKVNFESFIVYLFFFNKVELYMATRKNKLEKHL
GKWGRLCV
Run BLAST on NCBI

mRNA from alignment at Sc0000007:6789291..6790070-

Legend: CDSpolypeptideexonthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL85345_cuf0 ID=transcript:BL85345_cuf0|Name=transcript:BL85345_cuf0|organism=Branchiostoma lanceolatum|type=mRNA|length=780bp|location=Sequence derived from alignment at Sc0000007:6789291..6790070- (Branchiostoma lanceolatum)
CAGAACTATACATGGTTAAAACAGACAAAAATCAATAAATGTATGTATAA
ATTCTTTTTACTTTCCAATAACCTTATGGATACTGCACATAATGTACAAT
TATCTTGGCTGTACCTCTTTGACTCCCCCATCCCATGGAAAGTAGTATAC
ACTTTGTTGACTTACTGCACTATAGACCCAACACTTAGGTTTTTTCAGTA
CAAAATCTTACATAAGTTTTTACCTACAAACAGATTATTGCATATTTGGA
AATTGACTGATGACCCGTTGTGCTCATTTTGTCATCTTGAAGAGGAGACT
TACCTTCATGTGTTTTGGGAATGTCCTAACTTAATAGCTTTTTGGAATAA
ACTCAAAATTTGGTACCTTCAAAAAACAGGTCAAGAAATTCTTTTAAATG
GTTTTAATATCATTTTCGGAAACCTTTTCCCAGGCACCCCTGTAATCCAA
AACTTTATTATCTTATTAGCTAAATATTTTATATACCATAGTAGAAAGTC
CAAAAAAGTGAATTTTGAATCCTTTATTGTTTATTTATTCTTCTTCAATA
AAGTTGAATTATATATGGCTACAAGGAAAAATAAATTGGAAAAACATCTG
GGTAAATGGGGCAGATTATGTGTGTGAAGTACATTACATTTTGCCATACC
TTCTGTGTTATTTACACATATCATTCTGTCAGTTTTTACTATTTTTTGTT
GCATATCTATCATAAATCACATTATTTATGTACATTTATGTTATTTTGGT
TTGATAATATTTAAGTTGGATGGTCCACCG

Coding sequence (CDS) from alignment at Sc0000007:6789291..6790070-

>transcript:BL85345_cuf0 ID=transcript:BL85345_cuf0|Name=transcript:BL85345_cuf0|organism=Branchiostoma lanceolatum|type=CDS|length=627bp|location=Sequence derived from alignment at Sc0000007:6789291..6790070- (Branchiostoma lanceolatum)
CAGAACTATACATGGTTAAAACAGACAAAAATCAATAAATGTATGTATAA
ATTCTTTTTACTTTCCAATAACCTTATGGATACTGCACATAATGTACAAT
TATCTTGGCTGTACCTCTTTGACTCCCCCATCCCATGGAAAGTAGTATAC
ACTTTGTTGACTTACTGCACTATAGACCCAACACTTAGGTTTTTTCAGTA
CAAAATCTTACATAAGTTTTTACCTACAAACAGATTATTGCATATTTGGA
AATTGACTGATGACCCGTTGTGCTCATTTTGTCATCTTGAAGAGGAGACT
TACCTTCATGTGTTTTGGGAATGTCCTAACTTAATAGCTTTTTGGAATAA
ACTCAAAATTTGGTACCTTCAAAAAACAGGTCAAGAAATTCTTTTAAATG
GTTTTAATATCATTTTCGGAAACCTTTTCCCAGGCACCCCTGTAATCCAA
AACTTTATTATCTTATTAGCTAAATATTTTATATACCATAGTAGAAAGTC
CAAAAAAGTGAATTTTGAATCCTTTATTGTTTATTTATTCTTCTTCAATA
AAGTTGAATTATATATGGCTACAAGGAAAAATAAATTGGAAAAACATCTG
GGTAAATGGGGCAGATTATGTGTGTGA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL85345gene:BL85345Branchiostoma lanceolatumgene
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL85345_cuf0-E1BL85345_cuf0-E1-1564476830-80157Branchiostoma lanceolatumexon
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL85345_cuf0transcript:BL85345_cuf0-proteinBranchiostoma lanceolatumpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000007genomeSc0000007:6789291..6790070 -
Properties
Property NameValue
Transcript idBL85345_cuf0
Biotypeprotein_coding