|
|
Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL84717_cuf0 >transcript:BL84717_cuf0-protein ID=transcript:BL84717_cuf0-protein|Name=transcript:BL84717_cuf0|organism=Branchiostoma lanceolatum|type=polypeptide|length=685bp
QGFLSDSQKQGIISLLLKQGTNGQYKDPTILDNWRPLTLLCCDTRILSKC
LALRIRNVITNIIDKDQTGFIQGRFIGDNIRRLLDIIDIYEEEKKPGLIF
ISDFRKAFDTVRWDFLIKALEFFNFGSNLISWVKILYNDINSSVLNNGYL
SKPFKLHRGVRQGCPLSPYLFIIAIEMLAIKIRQNHNLSGLSVHGKMSKI
SQYADDTNFPFSPNLSSFNALVKDLDSFSSISGLTLNFEKCKILKIGTLK
HSNFELPTNLPFQWIDGGVEILGIHIPVDLSNIVDVNFSPRLDKVDRLLY
PWKGKNLSLYGKITIVNTLCVPQFTYLFQTLQMPDESFFVQYDKKIFTFI
WGGGPERVRRKTIYNSVVNGGLRLINLYAYALSIKSSWVPKLYLNPHWFA
AWPLHTHPSLGTTLFPFYQLQSAHGLNINPFLLEILNAWYKYQYKPPTTS
DEIKQQILWMNANILVEGKPILYAAFLNRHVIFLNDILNNDGRMMSYDEF
CYKYGQVCNNFTYMQLVTAIPKSWKFKLVGNFCNYVCRPEQHNSKWLTRI
KINRDMYEFFLLSEKLIDCPHNVQMAWLYLFDSPIPWKIVYTSLIYSTID
PVTRYFQYRLLHKFLPTNRFLYIWKLVDNPLCSFCHLEEETYIHVFWDCP
QLIKFWDDIKSWFYEKTGQLLNLNAFNIIFGNLSR Run BLAST on NCBI mRNA from alignment at Sc0000768:38750..40806+ Legend: CDSpolypeptideexonthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL84717_cuf0 ID=transcript:BL84717_cuf0|Name=transcript:BL84717_cuf0|organism=Branchiostoma lanceolatum|type=mRNA|length=2057bp|location=Sequence derived from alignment at Sc0000768:38750..40806+ (Branchiostoma lanceolatum)
CAAGGCTTCCTATCAGATTCACAGAAGCAAGGGATTATATCCTTATTATT
AAAACAGGGCACTAATGGCCAATATAAAGACCCAACCATATTAGATAATT
GGCGACCTTTGACCTTACTCTGTTGTGATACTAGGATTCTTTCAAAATGT
TTGGCTTTGAGAATTAGAAATGTAATAACTAATATAATAGATAAAGATCA
AACCGGTTTTATACAGGGTAGATTTATTGGTGATAATATCAGACGGTTAC
TTGACATCATAGACATTTATGAGGAAGAAAAAAAGCCAGGCCTTATATTT
ATTTCAGATTTTAGAAAAGCCTTTGATACGGTACGGTGGGATTTTCTTAT
TAAAGCACTAGAATTTTTTAATTTTGGTTCAAACTTGATAAGCTGGGTGA
AAATTCTATATAATGATATAAATAGTTCTGTCTTGAATAATGGATATTTG
TCAAAACCCTTCAAATTACACCGTGGTGTAAGGCAGGGTTGCCCACTCAG
CCCGTATTTATTTATTATTGCCATTGAAATGTTAGCCATCAAAATCCGAC
AGAATCATAACTTGTCTGGATTGTCTGTTCATGGAAAAATGTCAAAAATT
TCACAATATGCAGATGATACTAACTTCCCCTTTAGTCCAAATTTGTCGTC
CTTTAATGCTCTTGTAAAAGACCTTGATAGTTTCTCTAGTATCTCAGGTC
TTACATTAAATTTCGAAAAATGTAAGATCTTGAAAATAGGAACCTTAAAA
CATAGTAACTTTGAATTACCCACAAATCTCCCTTTTCAGTGGATAGATGG
AGGTGTGGAGATTTTAGGAATTCATATACCTGTGGATTTGTCCAACATAG
TTGATGTTAACTTTAGCCCACGTTTGGACAAAGTAGATAGACTTTTGTAC
CCATGGAAAGGGAAAAATTTATCATTATATGGAAAAATAACTATTGTTAA
TACTTTATGTGTTCCTCAATTTACCTATCTCTTCCAGACCCTCCAAATGC
CAGATGAGTCATTTTTTGTACAGTATGATAAAAAGATTTTTACCTTTATC
TGGGGTGGAGGTCCTGAGAGAGTTAGAAGAAAAACGATTTATAACTCTGT
TGTCAATGGTGGTTTAAGACTTATTAATCTGTATGCTTATGCTCTTTCCA
TTAAATCATCCTGGGTACCAAAGTTATATCTTAATCCTCACTGGTTTGCA
GCTTGGCCACTACATACACACCCTTCCCTAGGAACTACTCTATTTCCCTT
TTACCAACTCCAATCAGCACATGGTTTGAATATAAATCCTTTTCTATTAG
AGATCTTGAATGCATGGTATAAGTATCAATATAAACCCCCCACTACTTCT
GATGAGATCAAGCAACAAATCTTATGGATGAATGCAAATATTCTTGTTGA
AGGAAAACCTATATTATATGCTGCCTTTCTAAATAGACATGTGATTTTTT
TAAATGATATTTTAAACAATGATGGTAGAATGATGTCATATGATGAGTTT
TGTTACAAATATGGTCAAGTATGTAATAACTTTACCTACATGCAATTGGT
CACTGCAATACCAAAAAGCTGGAAATTCAAACTAGTAGGAAACTTCTGTA
ACTATGTATGTAGACCAGAACAACATAATAGTAAATGGTTGACTAGAATT
AAGATCAATAGGGATATGTATGAGTTTTTTCTCTTATCTGAAAAGCTAAT
TGATTGTCCACACAATGTACAAATGGCATGGCTGTACCTCTTTGATTCCC
CTATACCCTGGAAAATAGTGTATACTTCTTTGATATATAGTACTATAGAC
CCTGTGACTAGATATTTCCAATATAGACTTCTCCATAAATTTTTGCCTAC
TAATCGATTTTTATATATTTGGAAACTAGTAGACAACCCTTTATGCTCCT
TTTGTCATCTAGAGGAAGAAACTTACATTCATGTCTTCTGGGATTGCCCG
CAGTTGATAAAATTTTGGGATGACATTAAATCTTGGTTTTATGAGAAAAC
AGGTCAACTTTTAAACTTAAATGCATTTAATATCATATTTGGAAATTTAT
CTCGGGG Coding sequence (CDS) from alignment at Sc0000768:38750..40806+ >transcript:BL84717_cuf0 ID=transcript:BL84717_cuf0|Name=transcript:BL84717_cuf0|organism=Branchiostoma lanceolatum|type=CDS|length=2055bp|location=Sequence derived from alignment at Sc0000768:38750..40806+ (Branchiostoma lanceolatum)
CAAGGCTTCCTATCAGATTCACAGAAGCAAGGGATTATATCCTTATTATT
AAAACAGGGCACTAATGGCCAATATAAAGACCCAACCATATTAGATAATT
GGCGACCTTTGACCTTACTCTGTTGTGATACTAGGATTCTTTCAAAATGT
TTGGCTTTGAGAATTAGAAATGTAATAACTAATATAATAGATAAAGATCA
AACCGGTTTTATACAGGGTAGATTTATTGGTGATAATATCAGACGGTTAC
TTGACATCATAGACATTTATGAGGAAGAAAAAAAGCCAGGCCTTATATTT
ATTTCAGATTTTAGAAAAGCCTTTGATACGGTACGGTGGGATTTTCTTAT
TAAAGCACTAGAATTTTTTAATTTTGGTTCAAACTTGATAAGCTGGGTGA
AAATTCTATATAATGATATAAATAGTTCTGTCTTGAATAATGGATATTTG
TCAAAACCCTTCAAATTACACCGTGGTGTAAGGCAGGGTTGCCCACTCAG
CCCGTATTTATTTATTATTGCCATTGAAATGTTAGCCATCAAAATCCGAC
AGAATCATAACTTGTCTGGATTGTCTGTTCATGGAAAAATGTCAAAAATT
TCACAATATGCAGATGATACTAACTTCCCCTTTAGTCCAAATTTGTCGTC
CTTTAATGCTCTTGTAAAAGACCTTGATAGTTTCTCTAGTATCTCAGGTC
TTACATTAAATTTCGAAAAATGTAAGATCTTGAAAATAGGAACCTTAAAA
CATAGTAACTTTGAATTACCCACAAATCTCCCTTTTCAGTGGATAGATGG
AGGTGTGGAGATTTTAGGAATTCATATACCTGTGGATTTGTCCAACATAG
TTGATGTTAACTTTAGCCCACGTTTGGACAAAGTAGATAGACTTTTGTAC
CCATGGAAAGGGAAAAATTTATCATTATATGGAAAAATAACTATTGTTAA
TACTTTATGTGTTCCTCAATTTACCTATCTCTTCCAGACCCTCCAAATGC
CAGATGAGTCATTTTTTGTACAGTATGATAAAAAGATTTTTACCTTTATC
TGGGGTGGAGGTCCTGAGAGAGTTAGAAGAAAAACGATTTATAACTCTGT
TGTCAATGGTGGTTTAAGACTTATTAATCTGTATGCTTATGCTCTTTCCA
TTAAATCATCCTGGGTACCAAAGTTATATCTTAATCCTCACTGGTTTGCA
GCTTGGCCACTACATACACACCCTTCCCTAGGAACTACTCTATTTCCCTT
TTACCAACTCCAATCAGCACATGGTTTGAATATAAATCCTTTTCTATTAG
AGATCTTGAATGCATGGTATAAGTATCAATATAAACCCCCCACTACTTCT
GATGAGATCAAGCAACAAATCTTATGGATGAATGCAAATATTCTTGTTGA
AGGAAAACCTATATTATATGCTGCCTTTCTAAATAGACATGTGATTTTTT
TAAATGATATTTTAAACAATGATGGTAGAATGATGTCATATGATGAGTTT
TGTTACAAATATGGTCAAGTATGTAATAACTTTACCTACATGCAATTGGT
CACTGCAATACCAAAAAGCTGGAAATTCAAACTAGTAGGAAACTTCTGTA
ACTATGTATGTAGACCAGAACAACATAATAGTAAATGGTTGACTAGAATT
AAGATCAATAGGGATATGTATGAGTTTTTTCTCTTATCTGAAAAGCTAAT
TGATTGTCCACACAATGTACAAATGGCATGGCTGTACCTCTTTGATTCCC
CTATACCCTGGAAAATAGTGTATACTTCTTTGATATATAGTACTATAGAC
CCTGTGACTAGATATTTCCAATATAGACTTCTCCATAAATTTTTGCCTAC
TAATCGATTTTTATATATTTGGAAACTAGTAGACAACCCTTTATGCTCCT
TTTGTCATCTAGAGGAAGAAACTTACATTCATGTCTTCTGGGATTGCCCG
CAGTTGATAAAATTTTGGGATGACATTAAATCTTGGTTTTATGAGAAAAC
AGGTCAACTTTTAAACTTAAATGCATTTAATATCATATTTGGAAATTTAT
CTCGG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000768 | genome | Sc0000768:38750..40806 + |
Properties
| Property Name | Value |
|---|
| Transcript id | BL84717_cuf0 |
| Biotype | protein_coding |
|
