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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL84599_cuf0 >transcript:BL84599_cuf0-protein ID=transcript:BL84599_cuf0-protein|Name=transcript:BL84599_cuf0|organism=Branchiostoma lanceolatum|type=polypeptide|length=137bp
QQIVYNQDVAAIINQYEQELATARATNRSLQEQLHITEKALSGTEVKFTV
QSEMERIMACRASPFAKQVRTIEDIRSFSTKETIAFLQKEAPTLYNLVCN
LTTPHHRETERSESVATIMMLSTIANHEVEKLLACRP Run BLAST on NCBI mRNA from alignment at Sc0000289:309129..314498+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL84599_cuf0 ID=transcript:BL84599_cuf0|Name=transcript:BL84599_cuf0|organism=Branchiostoma lanceolatum|type=mRNA|length=5370bp|location=Sequence derived from alignment at Sc0000289:309129..314498+ (Branchiostoma lanceolatum)
ACCAACAGATAGTCTACAACCAGGATGTTGCGGCCATCATCAATCAGTAC
GAACAAGAACTTGCAACTGCTCGGGCTACAAACAGATCATTGCAGGAACA
GTTACATATTACAGAGAAAGCTCTCAGCGGTACAGAGGTGAAGTTCACGG
TACAATCTGAGATGGAGAGAATAATGGCATGCCGAGCTAGTCCATTTGCC
AAACAAGTGAGAACAATTGAAGACATCAGGTCTTTCTCCACCAAAGAGAC
AATTGCCTTTTTGCAGAAAGAAGCGCCCACATTGTACAACCTCGTATGTA
ATCTAACAACACCACACCACAGAGAAACAGAACGATCAGAGTCAGTTGCT
ACAATAATGATGCTATCTACTATCGCCAACCACGAAGTAGAAAAGCTGCT
GGCCTGCAGACCATAGTGGGGTTGATGCTGGTGGCCAGGACGTCTAACGA
CCAGGTAATCTTTATAGCAATGGTAGAATTTCGAAGCTACATGTATAAGC
ATTGACATCATATTTTCAACCAGCACTCTCCTAAAAAATCTAGAGCAAGA
CGGCAACTTTAGTGCTAATGCATCACCATAATCATTATTGACATGTAATG
GTAATGTAAAGAATCCTTGGTTTAGAATTGTGATGTGTGAGGATGTAGAA
AGAAGACAGTGTATACACTCATATTGATTGAAGGAACTGATATCAGTGTT
AAACATGAAATTGTCACATGATAGGGTAGATAAAACAATGATCCATTCAT
AGTATTGTATAATACATGACATACATTGTAGGTCTGGTCATACCCATGTT
ATGATAATTTTGCATATGATTCTGCTAACCTTTTTTTTTATTTCACAAGG
TCATCCAAACCTTAAACCATAGCGGTTTAAGTGTTGCGAGTTCCACTGTG
TTTAAAATCATGGCCGAGTTCTCAGAGGTGAGGAGAAAGGACATACTGAG
GCGGGACGAGCTCTGGACATATGATAGTGTCAATATCATGAAGAGAGTCA
GGCAAGTGCGGAAAGGTATAGACATGTATTGTCATGGATTACTAATTGCT
TTCCAGTATTTTTTTCGAAACTAGATGGTCTTAGCTTTCCATTGATATGG
TGAATTGAAAGGTGAATTTGCTACCATTGTGACCAGCAGCTGTTATAATA
CAGCTATGAAGCCAACCTAGTCGGGTACCCGAGGGAAGAGACAGTGACTA
ATTTGAAAAGCAACAGGAGAGGGGAGATTGATTTTGGCTACTGGTCTCAC
CTCAAAGCAACGAAACTAACCATGGGCCTTATGGCTACAGAAGGGCAGCT
CATGTTCAATTCAAATAGTACTGCTGCGTGGCTGACAGGTGTCTCTGAGG
AAGACCCCATTAAGTACTACATCTTGTCTCAAGTAATTAAAGAGGGGAAG
AATTGCACGAACAGAGAGAAAAGGAGCTGCAAGAGAAAATACGAATTGAG
TACCAAAGCTGCAAAATATGAGTCAAAGAAAGAAGGGGCAGCAGCAAGAG
GCATAGATGAGACAGTTTGGTTGCCCAGTTCAAGGCGAATAAACATCTTA
GGACCGCCGATAGAAAGGATTCATTTTTACAGAATACTGGAGAAACTCCA
AGCTGCCGGACAGCGCCGGATCTTCAACGTGTCAGACTAAAAAACAATAG
CTTTTTTGGAGCAGGGCACTCAACAGACCGTGACCAAATTTGTATTTTGT
ATTAAATTAGCCTTGAGCATCTGTTAAAACAGATTCATCTACTGACTGTT
CCAATGCTTTAAAACTAAATAGGTTTGTGTCGTATTACGTAGCAAGAAAA
ATTGCTCCAAAACCTCTGCCCACCAGCCTCATTATACCCTCACAAAACGT
CCCCATCACCGCCCCGATCACCAACCAGGGTGTGGTGATGCTTGCTTCTT
CTGTAGTAAAGCAAAACAAAACTCTGTCNTGTAGTAAAGCAAAATAAAAC
TGTCTCGGCGCATCAAATGTCCTGGTTTCAATGTACAGCAAAACGTTTTT
ATGAAAACTTAAAACGAATGTATGCTATGTTGCTGTTGGAGTGTTTATGT
CACACAGCGAGAAGACAGCCCATGACAGAACGTGTACATATATTAAACGT
GTGCTATAAATCAGAATTATGTATAAGAAGTGTTTCTTTATTTCAGATGA
CTATGGTACAGTTTCCAGCCATGTCCGTCAACACGAAAAAGAACTCCGAG
CCAAGGAAAAGGCTCAGAAGGTAAGTCAAAATACACACACACATTCAACT
CTACCTTTTCCAATAATCGATATATTGTACACATGTTCTTATATTTTTCT
ACCATACATTTTTGTATTGTAATCAAAATTGTCTGATTGTACAACATGCA
ATTACTGCACAATATATATATATACATATATATTCTAAAAACCACAATTT
GTACATGCAATGTATGATTTATCTATTACACAATCCTGAAAGACTGGACA
TCGACAATGCAAGTGAGGGTTCTGCAAACACGGAAGGTCCAAGTCTCTCA
GACAGGAGACAACATTGCGTCAGAACTCGAAGAGTGCCTTTCGGAATTCA
GCCTGCAGGGCAAGGGTGACGTAATGACAACTGACAATGCTAAAGCCATG
GTGAACGCAACCACCGCTGCAGGGATAAAACTGTGACTGAATTGTTTCGT
CCTTACACTGACCCTGTCCACTCAGAAGGCGATGAATGTGCCAGCTGTGC
GAATCATGTTGGCCATCATGAGACCACCAATTACTTTCGCAAATCATATC
TCGCCAGTTGTACCTCTGACAGCATCAGCTGATCCACAGACAAGACAGGA
CATTGTTCGACTGCTGAATACGACACTATCATTCATGACGACTGTCTTAA
CCACAACCTCATAGATCTAAAAAAAAGATATACGATGTAGGGCAAGTTGT
GACCACGGGGTAAATAGATATGGCAACCAACTTATAGAACTCTGCTCAGC
AGCCGATCTGACCAACAGCCCAAATGTGCGGCACGAGGTTAACTATGGTC
TACCAGTAGACACGGAAGAGATGTTGAAACAGATTGGTAGAGTTGGGCGG
GATGGTTTACCCTCTCACGCTATCACATATAGCTATGCACAATAAACATG
CATTGAGGAGAATGTGCAAGAAGACGCGATGCCAGTGATAAACACGTACT
GGTGCAAGTGAAAGAGGGCGAATGGGTGTCAATTTGTATGGTAGTGGTAA
GAAAAGAATCTGTCTACCAGTATATCAAGTTTCTTTCTTTATGTAAATAA
TTTTGTTTTCTGATCCTAATGCAATGGCATTATCATTCCGACGGCAAATT
CGAGTGTGTACTAGATCAAAGCCCATGCGGTGATTCGTGACAGTTAATCT
TTGAATAATGACAGGAAACTCCGATGGGGAAATAACATGTCAGGGGTAGG
TTATAGCGACACTCAGATGACGATTAAAAAGGTTGATCAAGCTAGACACC
AACTGACAGAACGTCAAACTTTTCTCTTTTCCACAGCGCCATAGTGGACA
TGGAATAAAACGAGGGACTGGCCAATGTGATGAGGGAGGAGTATCCGGAG
GTGCCCACGGGGAGAGAGTAGAAAAATCACGCCACGTTGTGTTATTAGAT
CAGTGTACGGAAAGTTGTTACCATATATATAAGATGAACCGCATAACAGA
GAGAGAGAGAGAAGATCTCACGCCACGTATGTTGTGTCGAGTTATGGCCG
CTATGATTCCATGGGGCACAGTAACAAGTATGAAACAAACACTATGGTCT
GTAACAGTATCTAAAAGTTTGTTCTCTTTCAGTTCCATCAGGCCTTTCAA
TCTTGCAGCAGCAACACAATGGAACTAGACGGGGCAAGGCGCTGTTTGTC
ATATTTCTATCCGCAGCAGGGTTAAAAGTTTCTACATTCATCACAGGCAG
GCACAAGGGCATCTGTGGATTAGAGAAGAGCTGAAAGACACTGCACATGT
GTTCAATTTGTGGCAATTGTATACAAAAATCACTGGTGCGTCCGGTCAAC
TTCTCAAAAATTCTATGGCCAAGTGGAGGTCCACATTGTCAGGCGCGTTG
TTAACAAATATGACAACCATCATGACGAATACTTCCCGGAATGTGCCCAT
TGACCGATTGAACATAAAAAGAATGCCCCAACTGAAAATAATGAAAGCAT
TTTGGACCTATATCTTAATTGATGGTCACCCGGTCAGTTTCTAGGCAGAC
CGCATCACACATTGCGCTTTTTATTCTAACTGGAGATGACGGACCTCTTT
CTCAATCCTCTGCCAACGGAGTTAATAGAGAAACTGAGAACCAAGTTATA
ACCCTTAAGCTGCCAGTCCCGACTTAATTAGGGATACAGAAATATGCCTT
GTGTGCTGGACCCGGTTATAACCGGGATAGGGTATTCCCCAGAACAAAAC
AGCTTTGCGTGCGTGTAGCGCGCGAAGCCGGGAAGTTAGCGCCGCAGGGT
GTTTCGCGGGTTTCGTGAGGGAGGTCAGGGGTCAAACATTTTTGATTTTT
ACTTGGCTAAAAAATCTGGCAGCTTAAGGGTTAACAAATCCATCAGCATA
GAGAGCGCTTGTCGTTGATGAAAAGGGGTACGACAGCCTGAAGGTGCCGT
CCCACGTCGGTAGTCGCCGTTTCAGTCCACAGGTGGCAATATTTTCGAAG
CAAGTCAGCCACCTGTGTGGCAGTAACACCTGCGTTCACATCGATCACCT
GCCATGCCCTCGATAATAACCAGCGGAAGACGTGTTTCACTGGAGACATT
GCTTCAGGCACGATCCATACAAGGCATGCATACTCCCACAGTAGGTTTGT
TTGATTTCTATTTCGTAAGAAAGATGACAAAAGGCAAATCAATTTTATTT
ATCTCTGATTTCGTGGTGCATCATTTCACCAGTTTTCCTCCTAAACAGCA
GTTTAATATTATCAAGCAATAAAAAAATTATTATATTATTTTTCTAATTC
ACAAACATGTACGTGTATTTTTTTCCCAACTTTTTGGTCTTATTGCTTGG
GGACGAACCCTACACTGGCTGATTCCCCAACAAAATTGTGCATTTTTTAC
TTCTAACCGTATTACCCAACTTCATTTATACATCTTTTTTTTCTTAAGAT
TTTTAATGGAAAGGATTCCTCTCTTTCTTTGAGATTAAAATTTTCCCTGC
ATACTAGCAAATACAGATAAAACTGAGAATTAGACTGGTGGAAGTTAGTG
CATTATGTAATGTAGTATATATATCTTTTACATCTACATCCAGAAACCAC
ATACACCATGGAACGGCACTACTCCCAGATGCAGAAGGAAATGGGGAAAA
AGAACCCCAAATTTCAGGTGGTAGACCAGCTCCTGGACTTGGAGCTACCA
GCAAGGAGGGAGCTGGTCCG Coding sequence (CDS) from alignment at Sc0000289:309129..314498+ >transcript:BL84599_cuf0 ID=transcript:BL84599_cuf0|Name=transcript:BL84599_cuf0|organism=Branchiostoma lanceolatum|type=CDS|length=414bp|location=Sequence derived from alignment at Sc0000289:309129..314498+ (Branchiostoma lanceolatum)
CAACAGATAGTCTACAACCAGGATGTTGCGGCCATCATCAATCAGTACGA
ACAAGAACTTGCAACTGCTCGGGCTACAAACAGATCATTGCAGGAACAGT
TACATATTACAGAGAAAGCTCTCAGCGGTACAGAGGTGAAGTTCACGGTA
CAATCTGAGATGGAGAGAATAATGGCATGCCGAGCTAGTCCATTTGCCAA
ACAAGTGAGAACAATTGAAGACATCAGGTCTTTCTCCACCAAAGAGACAA
TTGCCTTTTTGCAGAAAGAAGCGCCCACATTGTACAACCTCGTATGTAAT
CTAACAACACCACACCACAGAGAAACAGAACGATCAGAGTCAGTTGCTAC
AATAATGATGCTATCTACTATCGCCAACCACGAAGTAGAAAAGCTGCTGG
CCTGCAGACCATAG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000289 | genome | Sc0000289:309129..314498 + |
Properties
| Property Name | Value |
|---|
| Transcript id | BL84599_cuf0 |
| Biotype | protein_coding |
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