|
|
Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL84514_cuf0 >transcript:BL84514_cuf0-protein ID=transcript:BL84514_cuf0-protein|Name=transcript:BL84514_cuf0|organism=Branchiostoma lanceolatum|type=polypeptide|length=575bp
NKITMIHPGAFANLPQLQWLSLCSNKITMIQPGAFSNLPQLQKLNLYSNK
ITMIQLGAFANLPQLRTLYLSSNKITMIQPGAFANLPQLQRLYLSSNNIT
VIQPGTFTNLPQLRMLYLYSNQITMIQSGAFAYPIKLDCLDLNSNNLSAI
PPSTHGLLSSIRLIRLDKNPWQCDCRMAPFRLNVTKFPSFKDQIICDRPA
KFMGQKVTDINPEELICEEQTSFTSSVVSTSSSLVKTESNVFTTSSPLVV
PLESNNDSYNYTITSKYHWYFKTNDGSKKDLTGNARATPASPLVITSQKT
ESNDSYGSAPSFPLPVLSGTISSSVAGIVLIVTILLTIWSKMRTKNPPSD
PASVPNTNVALKTTNTTAVVVTNELFHQYEDMDKQHDKTGQGQSHASTES
NTNTTATIMTSGHNDQYENKDTQHDQTGQGQCQANTESSCARNKSYGTGP
SASQLNSMYKCVGQYQAIITSNKDTNTTAAVVASGLDHQHGNIDQHIKAG
QGQSQANSRSNTITTAAVISSGQDHQYEDMNQHNQTGQGQPQAIAESNRN
TTAAVVASGHNHQYEDIDNQHNQTG Run BLAST on NCBI mRNA from alignment at Sc0000114:595386..597179+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL84514_cuf0 ID=transcript:BL84514_cuf0|Name=transcript:BL84514_cuf0|organism=Branchiostoma lanceolatum|type=mRNA|length=1794bp|location=Sequence derived from alignment at Sc0000114:595386..597179+ (Branchiostoma lanceolatum)
TAACAAGATAACAATGATCCATCCGGGTGCATTTGCAAATCTACCTCAGC
TGCAATGGTTGTCCCTGTGCAGTAACAAGATAACAATGATTCAGCCTGGT
GCATTTTCAAATCTACCCCAGCTGCAAAAGTTGAACCTGTACAGTAACAA
GATAACAATGATTCAGCTTGGTGCATTTGCAAATCTACCCCAGCTGCGAA
CGTTGTACCTGTCCAGTAACAAGATAACAATGATTCAGCCTGGTGCATTT
GCAAATTTACCCCAGCTGCAAAGGTTGTACCTGTCCAGTAACAACATAAC
AGTGATTCAGCCTGGTACATTTACAAATCTACCACAGCTGCGAATGTTGT
ACCTTTACTCTAACCAGATAACAATGATTCAGTCTGGTGCATTTGCATAT
CCGATAAAACTCGATTGTTTAGACCTAAATTCAAACAATTTGTCTGCAAT
TCCCCCTTCAACGCATGGCTTGTTGTCGTCTATTCGCCTCATAAGACTTG
ACAAAAACCCTTGGCAGTGTGATTGTAGAATGGCTCCCTTCAGGCTAAAT
GTCACTAAATTTCCTTCATTTAAAGACCAGATAATCTGTGACCGACCCGC
CAAATTCATGGGACAGAAGGTTACAGACATCAATCCTGAAGAATTGATAT
GTGAAGAGCAAACCTCATTCACCTCATCTGTCGTGTCAACATCTTCCTCA
CTTGTCAAAACGGAAAGCAATGTTTTCACAACCTCAAGTCCCCTTGTTGT
CCCACTAGAAAGCAATAACGACAGTTATAATTACACCATCACCTCTAAGT
ATCACTGGTACTTCAAAACCAATGATGGCTCAAAGAAAGATCTTACAGGC
AATGCAAGAGCAACACCAGCTTCACCCCTTGTAATCACTTCACAAAAAAC
GGAAAGCAACGATTCCTATGGATCTGCCCCCAGTTTCCCCCTGCCTGTTC
TCAGTGGCACCATCAGTAGTTCAGTGGCTGGCATTGTCCTCATTGTCACC
ATCCTTCTCACAATCTGGTCCAAAATGAGGACCAAGAATCCTCCTTCAGA
CCCTGCTTCAGTCCCAAATACAAACGTTGCTTTGAAAACCACAAACACCA
CCGCTGTTGTAGTGACCAATGAGCTTTTTCATCAGTATGAAGATATGGAT
AAACAACATGATAAGACAGGGCAGGGCCAGTCTCATGCTAGCACTGAATC
CAACACAAACACCACAGCTACTATAATGACCAGTGGTCATAATGACCAGT
ATGAAAATAAGGACACCCAGCATGATCAGACAGGGCAGGGCCAGTGTCAG
GCCAACACTGAATCCTCGTGTGCGAGAAACAAGTCTTATGGCACCGGGCC
GTCTGCATCACAGCTTAATTCTATGTACAAATGTGTTGGCCAGTATCAGG
CCATCATTACATCCAACAAAGATACAAACACCACAGCTGCTGTAGTAGCT
TCTGGTCTTGATCATCAGCATGGGAATATTGACCAACATATTAAGGCAGG
GCAGGGTCAGTCTCAGGCCAACAGTAGATCCAACACCATCACCACAGCTG
CTGTAATATCTAGTGGTCAGGATCACCAGTATGAAGATATGAACCAACAT
AATCAGACAGGGCAGGGCCAGCCTCAGGCCATCGCTGAATCCAACAGAAA
CACCACAGCTGCTGTAGTAGCCAGTGGTCATAATCACCAATATGAAGATA
TTGACAACCAACATAATCAGACAGGGTAGGGTCAGTCTCAGGCCAACAGT
AAATCCAACACCAACACCACAGCTGCTGTAGGAGCTAATGGTGC Coding sequence (CDS) from alignment at Sc0000114:595386..597179+ >transcript:BL84514_cuf0 ID=transcript:BL84514_cuf0|Name=transcript:BL84514_cuf0|organism=Branchiostoma lanceolatum|type=CDS|length=1728bp|location=Sequence derived from alignment at Sc0000114:595386..597179+ (Branchiostoma lanceolatum)
AACAAGATAACAATGATCCATCCGGGTGCATTTGCAAATCTACCTCAGCT
GCAATGGTTGTCCCTGTGCAGTAACAAGATAACAATGATTCAGCCTGGTG
CATTTTCAAATCTACCCCAGCTGCAAAAGTTGAACCTGTACAGTAACAAG
ATAACAATGATTCAGCTTGGTGCATTTGCAAATCTACCCCAGCTGCGAAC
GTTGTACCTGTCCAGTAACAAGATAACAATGATTCAGCCTGGTGCATTTG
CAAATTTACCCCAGCTGCAAAGGTTGTACCTGTCCAGTAACAACATAACA
GTGATTCAGCCTGGTACATTTACAAATCTACCACAGCTGCGAATGTTGTA
CCTTTACTCTAACCAGATAACAATGATTCAGTCTGGTGCATTTGCATATC
CGATAAAACTCGATTGTTTAGACCTAAATTCAAACAATTTGTCTGCAATT
CCCCCTTCAACGCATGGCTTGTTGTCGTCTATTCGCCTCATAAGACTTGA
CAAAAACCCTTGGCAGTGTGATTGTAGAATGGCTCCCTTCAGGCTAAATG
TCACTAAATTTCCTTCATTTAAAGACCAGATAATCTGTGACCGACCCGCC
AAATTCATGGGACAGAAGGTTACAGACATCAATCCTGAAGAATTGATATG
TGAAGAGCAAACCTCATTCACCTCATCTGTCGTGTCAACATCTTCCTCAC
TTGTCAAAACGGAAAGCAATGTTTTCACAACCTCAAGTCCCCTTGTTGTC
CCACTAGAAAGCAATAACGACAGTTATAATTACACCATCACCTCTAAGTA
TCACTGGTACTTCAAAACCAATGATGGCTCAAAGAAAGATCTTACAGGCA
ATGCAAGAGCAACACCAGCTTCACCCCTTGTAATCACTTCACAAAAAACG
GAAAGCAACGATTCCTATGGATCTGCCCCCAGTTTCCCCCTGCCTGTTCT
CAGTGGCACCATCAGTAGTTCAGTGGCTGGCATTGTCCTCATTGTCACCA
TCCTTCTCACAATCTGGTCCAAAATGAGGACCAAGAATCCTCCTTCAGAC
CCTGCTTCAGTCCCAAATACAAACGTTGCTTTGAAAACCACAAACACCAC
CGCTGTTGTAGTGACCAATGAGCTTTTTCATCAGTATGAAGATATGGATA
AACAACATGATAAGACAGGGCAGGGCCAGTCTCATGCTAGCACTGAATCC
AACACAAACACCACAGCTACTATAATGACCAGTGGTCATAATGACCAGTA
TGAAAATAAGGACACCCAGCATGATCAGACAGGGCAGGGCCAGTGTCAGG
CCAACACTGAATCCTCGTGTGCGAGAAACAAGTCTTATGGCACCGGGCCG
TCTGCATCACAGCTTAATTCTATGTACAAATGTGTTGGCCAGTATCAGGC
CATCATTACATCCAACAAAGATACAAACACCACAGCTGCTGTAGTAGCTT
CTGGTCTTGATCATCAGCATGGGAATATTGACCAACATATTAAGGCAGGG
CAGGGTCAGTCTCAGGCCAACAGTAGATCCAACACCATCACCACAGCTGC
TGTAATATCTAGTGGTCAGGATCACCAGTATGAAGATATGAACCAACATA
ATCAGACAGGGCAGGGCCAGCCTCAGGCCATCGCTGAATCCAACAGAAAC
ACCACAGCTGCTGTAGTAGCCAGTGGTCATAATCACCAATATGAAGATAT
TGACAACCAACATAATCAGACAGGGTAG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000114 | genome | Sc0000114:595386..597179 + |
Properties
| Property Name | Value |
|---|
| Transcript id | BL84514_cuf0 |
| Biotype | protein_coding |
|
