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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL84237_cuf3 >transcript:BL84237_cuf3-protein ID=transcript:BL84237_cuf3-protein|Name=transcript:BL84237_cuf3|organism=Branchiostoma lanceolatum|type=polypeptide|length=371bp
KKTMPIFDHANNEPAVTTEDGTRRLRFLSTKTKKRKTIVKAQRANAEGLL
LLPFDVLPKVADALTGSQSTVKNIFLYNTGRCGSTLMCKAMDVINDVQTV
SEPDVFQMIFERVCKGDVPLTSDDKAEIIMLLRCCVILLNFYFQQNDQLK
TVICYKLRSEAIFIADLMQKGSPKAKTMFMYRDLLGFSDSCLNLVFGGSY
WRYLFETMLRLDVFFRVPTLKAISPIFRFSTEHPCMITCPVTQGIHFGFV
SFWILQMQKAFDLIQEDSENFFHACLTFKQLLEHKEQIILKVLEKLDVDV
TSDLVSSKITDIFGVDSQKGSAMQSERRTGDEVRSSWVGTWEKNLISTIL
EHFNGDVDVPDFVMPNTVMLN Run BLAST on NCBI mRNA from alignment at Sc0000005:2167319..2170505+ Legend: polypeptideexonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL84237_cuf3 ID=transcript:BL84237_cuf3|Name=transcript:BL84237_cuf3|organism=Branchiostoma lanceolatum|type=mRNA|length=3187bp|location=Sequence derived from alignment at Sc0000005:2167319..2170505+ (Branchiostoma lanceolatum)
AAAAAGACCATGCCAATATTTGACCATGCCAATAATGAGCCAGCGGTCAC
TACAGAGGATGGTACGCGCAGGCTACGTTTTCTAAGCACCAAGACGAAAA
AACGAAAGACAATTGTCAAGGCACGCAAGGAAGGCTACCATCCATTTTTG
TCATGTCAAAGAGTATCATAGACATGTTGGGAAAAAACAACAGTAAATGA
ATCCATAGCCTGTATGACATTCTTTTTCCCCTCTTTTTTCAGGCACAACG
TGCAAACGCAGAGGGACTGTTGCTCCTTCCCTTTGATGTACTTCCAAAAG
TGGCCGATGCTCTGACAGGAAGTCAGTCAACGGTTAAGAACATTTTCCTG
TATAACACTGGTGAGAACAATCAAAAGCAGTAGGTTTATATATATAGGTA
GCAGTATGTATTCTGATATCAGAGTATGTCACCATTGCCTTTCTTTCACT
AGACAAGGGACACTGCCAATCTTATTATGGTTCAAACATAATGTTCATCT
GAAACAGAGGGAGATATTTTAGTGTCAAACAGTCTATGTGCATGATACTT
AAGAGTGCTATTTTAGTGTCATTTATAATTAATTACCTCCTTGAAAACTG
GAGGTATTAGTTTTGTATGTCTGTGTGTGTGTCTGTGTTTCCAATAACGT
TAGCACCTCTGGATGGATTGTAATACCATTTGGTATGTATATGGATAAGT
GTTGGGAAGACAAAGGTCAAGTTTGATTTTGGCCACCTTTTTTTGTATCT
TTTGTCCTGGACATGCTATGATCTTGATTTTTTTTTTTTTAGTGGCACAT
AGTTTTTAATGTAAGGAAGAAGTAGTGTCGGTTTGAGCCCCCGAGCACCT
TGCTCTAGAACTGCAGGGGCATTTTTGTTAAAATCATTCAAAGAGAATAA
CAGAAAGAAGGAAAGACTACTATGTGATGTGGTTGAGTGACTGCTCAAAA
CAATGTACTGTAACAGTTAAATAATGTACTTTTGAATCTTCTAATTCTAT
CCTATATGATTGTATAGGACGTTGTGGCTCCACTCTGATGTGCAAAGCTA
TGGATGTCATCAATGACGTGCAGACTGTGTCAGAACCTGACGTCTTTCAG
ATGATCTTTGAGGTAAGATCACATGACCAAAGGTCAAAAGTTACAGTCAC
CTGAAAGATGTAACGTTACTTATTATGCAATGGCAACATTGACAACAAAT
GGGACATTGTGAAAAATGCTTGTTTGTAGACAATGACTTGACACACGTAT
CAATTTTCGTCCGCTTCCCAAAAAAACATTTTTGTACCATACTCAACATG
TAAGTCGTACAAAGTAGCTGGAGATTGGATACTGATAGTGTATTATTCAA
TTTCAAAGTCAATGAAGAAAATGTGAAAGAATATATTATTTGGTATGCCA
TCATTTGTTCAACCTTCCTGATCACATAGATTTCATAATAAAGGCAACTT
TTTTTTTCCGAACTTTTTTTATTCGCACGTTTGCATCAGTTTGAGAGTTC
ACAGAGGATGTCATTCATATAATCAAATTAAACATGGCCTTATCAAGAAA
ATGTACTAGTAACAACCATCTTCAATGTTTATCATGTAGCGTGTTTGCAA
AGGAGATGTTCCCTTAACCTCTGATGATAAGGCAGAGATAATCATGTTGC
TGAGATGCTGCGTCATCCTGCTCAACTTCTACTTCCAACAAAACGATCAG
TTGAAGACAGTCATCTGTTACAAGCTTCGAAGCGAGGCCATTTTCATCGC
TGACCTCATGCAAAAAGGTTCTCCAAAGGCAAAAACAATGTTTATGTATA
GAGACCTTCTTGGATTCAGTGACTCCTGTCTTAATCTGGTATTTGGTGGC
AGCTATTGGCGCTACCTGTTTGAGACCATGTTGAGGTTGGATGTGTTCTT
TCGAGTTCCAACGCTTAAGGCCATTTCGCCAATCTTCCGATTTTCTACTG
AACATCCGTGCATGATCACATGTCCTGTTACACAGGGCATACATTTTGGC
TTTGTTTCGTTTTGGATCTTGCAGATGCAAAAGGCGTTTGATTTGATTCA
AGAAGATTCAGAAAACTTCTTCCATGCGTGCCTCACTTTCAAACAACTCT
TGGAACACAAAGAACAAATCATCCTCAAGGTTCTAGAGAAACTTGATGTG
GATGTTACATCTGATCTTGTCAGTTCCAAGATCACAGATATTTTTGGTGT
CGATAGTCAGAAGGGTAGTGCCATGCAGAGTGAAAGACGAACGGGGGATG
AGGTAAGAAGTTCATGGGTGGGTACTTGGGAGAAGAATCTGATCTCAACT
ATTCTGGAACATTTTAACGGAGATGTCGATGTACCAGATTTTGTCATGCC
AAACACGGTGATGCTCAACTGACAATCTCCAAAGTAATGTTCATAACTCT
TTTCATAGTGGTAGCATACTACAGAATATGGATAGTAAAATATGATTTTT
CTGACATAGCAGAAGGCATTGTACTACCGTACCTTACAGTGGCCATTTTG
TCATGATTGAACTTTGACATAGATACTTTCCTATTACATGTAATGTCATA
TCTTACTTGTACAGACAGTATAGAAAATGTCCAGTGAACATATACCTTTA
TAAATATATTAACCAAAGTGATCATGTTATGAAATTATGCTTTGTGATAT
ATTTCTATACCAGCTGTCAATATGTATATTGTATATGTTTATGTATATTG
TATATGTTAAGCCACTAGTGCCTAGAAGAAAAGTGGTATCTACCCACTGT
ATCATATGTGGATATATAGGGGACAATATAAAGAATCGTCACACTGGTGT
TTTTGTTAAGATGACAGCTAGCTGAAAATACATGTATGTATTATATAATA
CCGTAGTTTATGACTAGACTGCCTACATGAAGATTGGAAAACTTCGTCTG
AAACACCCTGCTCACACCCCTACTCTCTTTTATAAGTGCAGCGGGTTCTT
AACCTTACTGAAAATGAAAAGATGAGACAGAAAGAATTCAAGTGTGGAAG
CCATCAGTGCTTTATTTACACAGAACAGGTGTTCAAAGTCTTCTATATCA
ACATTAACCCTGGTTTATGGCACATGATTAAACAAGTTACATCACTTTTG
TGTTACAAAAAGACTTCCAACACGAAGGGTAAAACACTGCAGACTAAATC
AGAAACTAAGGAAGCCTTCATCGTGATATGACTTTTG Coding sequence (CDS) from alignment at Sc0000005:2167319..2170505+ >transcript:BL84237_cuf3 ID=transcript:BL84237_cuf3|Name=transcript:BL84237_cuf3|organism=Branchiostoma lanceolatum|type=CDS|length=4464bp|location=Sequence derived from alignment at Sc0000005:2167319..2170505+ (Branchiostoma lanceolatum)
AAAAAGACCATGCCAATATTTGACCATGCCAATAATGAGCCAGCGGTCAC
TACAGAGGATGGTACGCGCAGGCTACGTTTTCTAAGCACCAAGACGAAAA
AACGAAAGACAATTGTCAAGGCACAACGTGCAAACGCAGAGGGACTGTTG
CTCCTTCCCTTTGATGTACTTCCAAAAGTGGCCGATGCTCTGACAGGAAG
TCAGTCAACGGTTAAGAACATTTTCCTGTATAACACTGGACGTTGTGGCT
CCACTCTGATGTGCAAAGCTATGGATGTCATCAATGACGTGCAGACTGTG
TCAGAACCTGACGTCTTTCAGATGATCTTTGAGCGTGTTTGCAAAGGAGA
TGTTCCCTTAACCTCTGATGATAAGGCAGAGATAATCATGTTGCTGAGAT
GCTGCGTCATCCTGCTCAACTTCTACTTCCAACAAAACGATCAGTTGAAG
ACAGTCATCTGTTACAAGCTTCGAAGCGAGGCCATTTTCATCGCTGACCT
CATGCAAAAAGGTTCTCCAAAGGCAAAAACAATGTTTATGTATAGAGACC
TTCTTGGATTCAGTGACTCCTGTCTTAATCTGGTATTTGGTGGCAGCTAT
TGGCGCTACCTGTTTGAGACCATGTTGAGGTTGGATGTGTTCTTTCGAGT
TCCAACGCTTAAGGCCATTTCGCCAATCTTCCGATTTTCTACTGAACATC
CGTGCATGATCACATGTCCTGTTACACAGGGCATACATTTTGGCTTTGTT
TCGTTTTGGATCTTGCAGATGCAAAAGGCGTTTGATTTGATTCAAGAAGA
TTCAGAAAACTTCTTCCATGCGTGCCTCACTTTCAAACAACTCTTGGAAC
ACAAAGAACAAATCATCCTCAAGGTTCTAGAGAAACTTGATGTGGATGTT
ACATCTGATCTTGTCAGTTCCAAGATCACAGATATTTTTGGTGTCGATAG
TCAGAAGGGTAGTGCCATGCAGAGTGAAAGACGAACGGGGGATGAGGTAA
GAAGTTCATGGGTGGGTACTTGGGAGAAGAATCTGATCTCAACTATTCTG
GAACATTTTAACGGAGATGTCGATGTACCAGATTTTGTCATGCCAAACAC
GGTGATGCTCAACTGAAAAAAGACCATGCCAATATTTGACCATGCCAATA
ATGAGCCAGCGGTCACTACAGAGGATGGTACGCGCAGGCTACGTTTTCTA
AGCACCAAGACGAAAAAACGAAAGACAATTGTCAAGGCACAACGTGCAAA
CGCAGAGGGACTGTTGCTCCTTCCCTTTGATGTACTTCCAAAAGTGGCCG
ATGCTCTGACAGGAAGTCAGTCAACGGTTAAGAACATTTTCCTGTATAAC
ACTGGACGTTGTGGCTCCACTCTGATGTGCAAAGCTATGGATGTCATCAA
TGACGTGCAGACTGTGTCAGAACCTGACGTCTTTCAGATGATCTTTGAGC
GTGTTTGCAAAGGAGATGTTCCCTTAACCTCTGATGATAAGGCAGAGATA
ATCATGTTGCTGAGATGCTGCGTCATCCTGCTCAACTTCTACTTCCAACA
AAACGATCAGTTGAAGACAGTCATCTGTTACAAGCTTCGAAGCGAGGCCA
TTTTCATCGCTGACCTCATGCAAAAAGGTTCTCCAAAGGCAAAAACAATG
TTTATGTATAGAGACCTTCTTGGATTCAGTGACTCCTGTCTTAATCTGGT
ATTTGGTGGCAGCTATTGGCGCTACCTGTTTGAGACCATGTTGAGGTTGG
ATGTGTTCTTTCGAGTTCCAACGCTTAAGGCCATTTCGCCAATCTTCCGA
TTTTCTACTGAACATCCGTGCATGATCACATGTCCTGTTACACAGGGCAT
ACATTTTGGCTTTGTTTCGTTTTGGATCTTGCAGATGCAAAAGGCGTTTG
ATTTGATTCAAGAAGATTCAGAAAACTTCTTCCATGCGTGCCTCACTTTC
AAACAACTCTTGGAACACAAAGAACAAATCATCCTCAAGGTTCTAGAGAA
ACTTGATGTGGATGTTACATCTGATCTTGTCAGTTCCAAGATCACAGATA
TTTTTGGTGTCGATAGTCAGAAGGGTAGTGCCATGCAGAGTGAAAGACGA
ACGGGGGATGAGGTAAGAAGTTCATGGGTGGGTACTTGGGAGAAGAATCT
GATCTCAACTATTCTGGAACATTTTAACGGAGATGTCGATGTACCAGATT
TTGTCATGCCAAACACGGTGATGCTCAACTGAAAAAAGACCATGCCAATA
TTTGACCATGCCAATAATGAGCCAGCGGTCACTACAGAGGATGGTACGCG
CAGGCTACGTTTTCTAAGCACCAAGACGAAAAAACGAAAGACAATTGTCA
AGGCACAACGTGCAAACGCAGAGGGACTGTTGCTCCTTCCCTTTGATGTA
CTTCCAAAAGTGGCCGATGCTCTGACAGGAAGTCAGTCAACGGTTAAGAA
CATTTTCCTGTATAACACTGGACGTTGTGGCTCCACTCTGATGTGCAAAG
CTATGGATGTCATCAATGACGTGCAGACTGTGTCAGAACCTGACGTCTTT
CAGATGATCTTTGAGCGTGTTTGCAAAGGAGATGTTCCCTTAACCTCTGA
TGATAAGGCAGAGATAATCATGTTGCTGAGATGCTGCGTCATCCTGCTCA
ACTTCTACTTCCAACAAAACGATCAGTTGAAGACAGTCATCTGTTACAAG
CTTCGAAGCGAGGCCATTTTCATCGCTGACCTCATGCAAAAAGGTTCTCC
AAAGGCAAAAACAATGTTTATGTATAGAGACCTTCTTGGATTCAGTGACT
CCTGTCTTAATCTGGTATTTGGTGGCAGCTATTGGCGCTACCTGTTTGAG
ACCATGTTGAGGTTGGATGTGTTCTTTCGAGTTCCAACGCTTAAGGCCAT
TTCGCCAATCTTCCGATTTTCTACTGAACATCCGTGCATGATCACATGTC
CTGTTACACAGGGCATACATTTTGGCTTTGTTTCGTTTTGGATCTTGCAG
ATGCAAAAGGCGTTTGATTTGATTCAAGAAGATTCAGAAAACTTCTTCCA
TGCGTGCCTCACTTTCAAACAACTCTTGGAACACAAAGAACAAATCATCC
TCAAGGTTCTAGAGAAACTTGATGTGGATGTTACATCTGATCTTGTCAGT
TCCAAGATCACAGATATTTTTGGTGTCGATAGTCAGAAGGGTAGTGCCAT
GCAGAGTGAAAGACGAACGGGGGATGAGGTAAGAAGTTCATGGGTGGGTA
CTTGGGAGAAGAATCTGATCTCAACTATTCTGGAACATTTTAACGGAGAT
GTCGATGTACCAGATTTTGTCATGCCAAACACGGTGATGCTCAACTGAAA
AAAGACCATGCCAATATTTGACCATGCCAATAATGAGCCAGCGGTCACTA
CAGAGGATGGTACGCGCAGGCTACGTTTTCTAAGCACCAAGACGAAAAAA
CGAAAGACAATTGTCAAGGCACAACGTGCAAACGCAGAGGGACTGTTGCT
CCTTCCCTTTGATGTACTTCCAAAAGTGGCCGATGCTCTGACAGGAAGTC
AGTCAACGGTTAAGAACATTTTCCTGTATAACACTGGACGTTGTGGCTCC
ACTCTGATGTGCAAAGCTATGGATGTCATCAATGACGTGCAGACTGTGTC
AGAACCTGACGTCTTTCAGATGATCTTTGAGCGTGTTTGCAAAGGAGATG
TTCCCTTAACCTCTGATGATAAGGCAGAGATAATCATGTTGCTGAGATGC
TGCGTCATCCTGCTCAACTTCTACTTCCAACAAAACGATCAGTTGAAGAC
AGTCATCTGTTACAAGCTTCGAAGCGAGGCCATTTTCATCGCTGACCTCA
TGCAAAAAGGTTCTCCAAAGGCAAAAACAATGTTTATGTATAGAGACCTT
CTTGGATTCAGTGACTCCTGTCTTAATCTGGTATTTGGTGGCAGCTATTG
GCGCTACCTGTTTGAGACCATGTTGAGGTTGGATGTGTTCTTTCGAGTTC
CAACGCTTAAGGCCATTTCGCCAATCTTCCGATTTTCTACTGAACATCCG
TGCATGATCACATGTCCTGTTACACAGGGCATACATTTTGGCTTTGTTTC
GTTTTGGATCTTGCAGATGCAAAAGGCGTTTGATTTGATTCAAGAAGATT
CAGAAAACTTCTTCCATGCGTGCCTCACTTTCAAACAACTCTTGGAACAC
AAAGAACAAATCATCCTCAAGGTTCTAGAGAAACTTGATGTGGATGTTAC
ATCTGATCTTGTCAGTTCCAAGATCACAGATATTTTTGGTGTCGATAGTC
AGAAGGGTAGTGCCATGCAGAGTGAAAGACGAACGGGGGATGAGGTAAGA
AGTTCATGGGTGGGTACTTGGGAGAAGAATCTGATCTCAACTATTCTGGA
ACATTTTAACGGAGATGTCGATGTACCAGATTTTGTCATGCCAAACACGG
TGATGCTCAACTGA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000005 | genome | Sc0000005:2167319..2170505 + |
Properties
| Property Name | Value |
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| Transcript id | BL84237_cuf3 |
| Biotype | protein_coding |
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